ISNme2

  • Family IS1595
  • Group IS1016
MGE type ISRelated element(s) :
Isoform Synonym(s) IS1016
Accession numberTranspositionOriginHost
AY289932 ND Neisseria meningitidis
Neisseria meningitidis
DNA section
IS Length : 731 bp

Ends


IR Length : 17/18

IRL : GGGGCTTAGGAAGCAAAATCATCAAAAAACGTGATAAGCTCCTAATATGA
IRR : GGGGTTTAGGAAGCAAAAATATTAAATTGGGTTATTTCGAAGCATCTTCA

Insertion site


Left flankDirect repeatRight flankDR Length
TTTAAATTTAATAAAAAATATAATAACTTAAA7

DNA sequence

GGGGCTTAGGAAGCAAAATCATCAAAAAACGTGATAAGCTCCTAATATGAAACTAAAAAATAAGTATCAAAAGTTCAGCAAAATTTCAGAGCAAAAGTTT
AGAGAAATAATCCGCTGTTTCGCTCTTGATTTGACCGCTTCCGATACTGCTAAAATGACCGGCATTAGTGTACGCAGTATCAATCCTATTTTCCTGAAAA
TCAGACGCAGGATTGCTGCTCTGTGCGAACAAAGCTCACCACTGTCCGGTGTGGTCGAATTAGATGAATCTTACTTTGGGGCGCGACGTATCAGGGGTAA
GCGCGGTCGCGGAGCGTCAGGTAAAACCATCGTATTTGGCATACTGAAACGCAATGGCGTGGTCTATACGGAAATCGTTCCCGACGCTTCGAAAGCCTCA
CTAATCAAGGTCATACGTGGTCACATATCTGCTGACAGTGAAATCAATACTGACGGCTGGAAAGCATATGACGGTCTTGTCGATATGGGCTATGAGAAGC
ATTACCGTGTCCATCATGGTTCCAATGAGTTTGCTCGAGGAAAGCAACATATCAATGGTATTGAATCTTTTTGGAGTTATGCTAAGGGGCGTTTGGCTAA
ATTTTATGGTATTTCCAAAGAGATGTTTTATCTGCATCTCAAAGAAACGGAGTTTAGGTTTAACCACCGGCATAATATTAATGAAGATGCTTCGAAATAA
CCCAATTTAATATTTTTGCTTCCTAAACCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
654 bp217 aa47700+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKLKNKYQKFSKISEQKFREIIRCFALDLTASDTAKMTGISVRSINPIFLKIRRRIAALCEQSSPLSGVVELDESYFGARRIRGKRGRGASGKTIVFGIL
KRNGVVYTEIVPDASKASLIKVIRGHISADSEINTDGWKAYDGLVDMGYEKHYRVHHGSNEFARGKQHINGIESFWSYAKGRLAKFYGISKEMFYLHLKE
TEFRFNHRHNINEDASK

 

Blast result :
Comments
ISNme2 is 73% aa similar to ISFtu3.
References
1] Tzeng,Y.L., Noble,C. and Stephens,D.S.(2003) Infect. Immun. 71 (12), 6712-6720