ISNme2
- Family IS1595
- Group IS1016
Isoform Synonym(s) IS1016
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY289932 | ND | Neisseria meningitidis | Neisseria meningitidis |
DNA section
IS Length : 731 bp
Ends
IR Length : 17/18
IRL : GGGGCTTAGGAAGCAAAATCATCAAAAAACGTGATAAGCTCCTAATATGA
IRR : GGGGTTTAGGAAGCAAAAATATTAAATTGGGTTATTTCGAAGCATCTTCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTAAATTTAATAA | AAAATAT | AATAACTTAAA | 7 |
DNA sequence
GGGGCTTAGGAAGCAAAATCATCAAAAAACGTGATAAGCTCCTAATATGAAACTAAAAAATAAGTATCAAAAGTTCAGCAAAATTTCAGAGCAAAAGTTT
AGAGAAATAATCCGCTGTTTCGCTCTTGATTTGACCGCTTCCGATACTGCTAAAATGACCGGCATTAGTGTACGCAGTATCAATCCTATTTTCCTGAAAA
TCAGACGCAGGATTGCTGCTCTGTGCGAACAAAGCTCACCACTGTCCGGTGTGGTCGAATTAGATGAATCTTACTTTGGGGCGCGACGTATCAGGGGTAA
GCGCGGTCGCGGAGCGTCAGGTAAAACCATCGTATTTGGCATACTGAAACGCAATGGCGTGGTCTATACGGAAATCGTTCCCGACGCTTCGAAAGCCTCA
CTAATCAAGGTCATACGTGGTCACATATCTGCTGACAGTGAAATCAATACTGACGGCTGGAAAGCATATGACGGTCTTGTCGATATGGGCTATGAGAAGC
ATTACCGTGTCCATCATGGTTCCAATGAGTTTGCTCGAGGAAAGCAACATATCAATGGTATTGAATCTTTTTGGAGTTATGCTAAGGGGCGTTTGGCTAA
ATTTTATGGTATTTCCAAAGAGATGTTTTATCTGCATCTCAAAGAAACGGAGTTTAGGTTTAACCACCGGCATAATATTAATGAAGATGCTTCGAAATAA
CCCAATTTAATATTTTTGCTTCCTAAACCCC
AGAGAAATAATCCGCTGTTTCGCTCTTGATTTGACCGCTTCCGATACTGCTAAAATGACCGGCATTAGTGTACGCAGTATCAATCCTATTTTCCTGAAAA
TCAGACGCAGGATTGCTGCTCTGTGCGAACAAAGCTCACCACTGTCCGGTGTGGTCGAATTAGATGAATCTTACTTTGGGGCGCGACGTATCAGGGGTAA
GCGCGGTCGCGGAGCGTCAGGTAAAACCATCGTATTTGGCATACTGAAACGCAATGGCGTGGTCTATACGGAAATCGTTCCCGACGCTTCGAAAGCCTCA
CTAATCAAGGTCATACGTGGTCACATATCTGCTGACAGTGAAATCAATACTGACGGCTGGAAAGCATATGACGGTCTTGTCGATATGGGCTATGAGAAGC
ATTACCGTGTCCATCATGGTTCCAATGAGTTTGCTCGAGGAAAGCAACATATCAATGGTATTGAATCTTTTTGGAGTTATGCTAAGGGGCGTTTGGCTAA
ATTTTATGGTATTTCCAAAGAGATGTTTTATCTGCATCTCAAAGAAACGGAGTTTAGGTTTAACCACCGGCATAATATTAATGAAGATGCTTCGAAATAA
CCCAATTTAATATTTTTGCTTCCTAAACCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
654 bp | 217 aa | 47 | 700 | + | No |
Chemistry : DDE
ORF sequence :
MKLKNKYQKFSKISEQKFREIIRCFALDLTASDTAKMTGISVRSINPIFLKIRRRIAALCEQSSPLSGVVELDESYFGARRIRGKRGRGASGKTIVFGIL
KRNGVVYTEIVPDASKASLIKVIRGHISADSEINTDGWKAYDGLVDMGYEKHYRVHHGSNEFARGKQHINGIESFWSYAKGRLAKFYGISKEMFYLHLKE
TEFRFNHRHNINEDASK
KRNGVVYTEIVPDASKASLIKVIRGHISADSEINTDGWKAYDGLVDMGYEKHYRVHHGSNEFARGKQHINGIESFWSYAKGRLAKFYGISKEMFYLHLKE
TEFRFNHRHNINEDASK
Blast result :
Comments
ISNme2 is 73% aa similar to ISFtu3.
References
1] Tzeng,Y.L., Noble,C. and Stephens,D.S.(2003) Infect. Immun. 71 (12), 6712-6720