ISMha1

  • Family IS1595
  • Group IS1016
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY324982 ND Mannheimia haemolytica
Mannheimia haemolytica plasmid pGS2-53
DNA section
IS Length : 701 bp

Ends


IR Length : 19

IRL : GGGGCTGTAGTAGATTAGCATCACTGCTATACTACAAAAATGAAGATAAT
IRR : GGGGCTGTAGTAGATTAGCCCTAAATCTCACACCATTTTCGCAACGTTTT

Insertion site


Left flankDirect repeatRight flankDR Length
TGCCATAATTAAAAAATTTTCATAAGGGAAA8

DNA sequence

GGGGCTGTAGTAGATTAGCATCACTGCTATACTACAAAAATGAAGATAATTTATTGTAAATTAAAGAAATCTTTGCAGAAAAAGCTTCTTGAATTTTTTG
TTGCTGAAGTGACCGCTAGAACCGCTGCTGATTTATTAGGTATTCAACCCAATACGGCAGCCCTGTTTTACCACAAAATTAGGCTGGTCATTGAACACCA
TTTAGCCCTTGAAGCTCATGAAATTTTTGAGGGAAAAATTGAGGTAGATGAAAGCTATTTTGCTGGTCATCGCAAAGGAAAACGAGGGCGACCTGCGGCT
GGGAAAGTCGCTGTATTCGGTTTGTTGAAGCGTCAAGGAAAGGTGTTTACAAAATGTACCAAATCAGAAACGCTAATGCCGGTTATTACAAGGAAAATCA
AGCCTGACAGCTGGGTTTATACGGATACCTATCGTAGCTATGATGCCCTTGATGTGAGCAATTTCATCCACGAGCGAATCAACCATTCCGAACTGTTTGC
GGAGAAACAAAACCATATCAATGGCATTGAAAATTTTTGGAATCAAGCGACAGTACTCCGAAAATATAACGGAATTAACCGAAAAAATTTCCCTTTATTC
TTGAAGGAATGTGAATTTCGGTTTAACTTTGGTACACCAAAAGAACAGCTCAAAACGTTGCGAAAATGGTGTGAGATTTAGGGCTAATCTACTACAGCCC
C
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
642 bp213 aa40681+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKIIYCKLKKSLQKKLLEFFVAEVTARTAADLLGIQPNTAALFYHKIRLVIEHHLALEAHEIFEGKIEVDESYFAGHRKGKRGRPAAGKVAVFGLLKRQG
KVFTKCTKSETLMPVITRKIKPDSWVYTDTYRSYDALDVSNFIHERINHSELFAEKQNHINGIENFWNQATVLRKYNGINRKNFPLFLKECEFRFNFGTP
KEQLKTLRKWCEI

 

Blast result :
Comments
ISMha1 is 80% aa similar to IS1016C.
References
1] Lo, R.Y. (2003) Direct submission GenBank.