ISMmy2

  • Family IS3
  • Group IS150
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
DQ887910 Y Mycoplasma mycoides
Mycoplasma yeatsii
Mycoplasma mycoides subsp mycoides LC CIRAD-95010-C1
Mycoplasma mycoides
Mycoplasma capricolum
Mycoplasma cottewii
DNA section
IS Length : 1374 bp

Ends


IR Length : 21/24

IRL : GAGAGTAGGACAAAATTATTAGACCCCCTAGGATAGACCCCCTAGGGGGT
IRR : GAAACCAGGACAAAATTATTAGACTAAAAAGTTATGTTTATTATACACAC

Insertion site


Left flankDirect repeatRight flankDR Length
NNNNNNNNNNATTNNNNNNNNNN3

DNA sequence

GAGAGTAGGACAAAATTATTAGACCCCCTAGGATAGACCCCCTAGGGGGTCTATTTTTTTTGAAAAGGAGAACCTATGAAAAGAGGAAAACAGCTAAGTG
TAAATGAATGAATAGAACTGTTTAAACATTATAAAGATTATCTATCTCACAATATTACTAAAAAAGAATTTTATTATATTTATAGCAAAATTAGAAATTC
TGGTGATTCATTACCTTCACAAAAAGCTATGGAATATTTATCTAAAAAATATAGATATTATAATTTAGGTATGGAACTAAAAGAATCACAAACAGGAAGA
GCGCCTAAAAAAGGTAAGGGATCAGGTAGACCTAGAAAGAACAAAGAAGAATATGATAAACAAAGAAACGAAGTAATTAAGGAGATTGATCGTGAAGTTT
TAGAATGGTTAATAACAGATCTTTTTAAAGAAGAAATTTTAAAAAAGCATAAGGTTGATAATTTAGATGAATTAATAGAGAAAATTAAAGAGAAGTTTGG
AACAAATATTACTAATAAAAAAATAATGAAAATTCTTGGCCTACCTAAATCAACTTTTTACTACAAACTTAAAAAACAATCAAATGATAAGAATAAAGCG
TTTGTAAAACACGCAAACATAATTAAAGAAGCATTTGAAAAACAAAATGGAAGATACGGTAGAGAAAGGCTATCAGCATATATTTTCAAGACATATGGTA
TTAATATGAATCCCAGAACATTAGGAAGAGCAATGAATAAATTGGGTCTTTTTTGTCATGTGAGAACAATGTGCAAGAAAAAGCGTGAATCAAAAAATAC
TAACGTATATTATCCAAACATTGCTAATAGGGATTATAATGGGCTACAAAACGATATTTACGCAAGTGACGTTAGTTACATTCCAGCTCCAATTGACGTA
GAAGGAAGACACGTTTATTTATCTATCTTAATTCATCACAGAACAAAGAAAGTTGTTAGCTATAATTTATCTATAAATAACGATACTAATTTGGTTATGT
CTCACATTGTAAAAACAAAATTTCCTAAAGACTTTATTATTCATACAGATCATGGTGCTGCATATTCATCAATAGAATATCTTGACTACATAAAACAACA
AGGTGGAATAGTGTCAATGTCAAGAATAGGCAATTCACTAGACAATAGAGAGGCTGAGTATTTCTTTTCAATTTTAAAATCAGAGATGTTTATTAACTTT
GAAAAGAAGGTAAAAGAAATTACCTTTGGCGAACTAAAAGAATACATTAAAAATTTTATTGAATGATATAACAGTGAAAGAATTTTAAGAAAATTCAAAT
GAAAAACACCTCAAGAATTATGAGGTGTGTATAATAAACATAACTTTTTAGTCTAATAATTTTGTCCTGGTTTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1278 bp426 aa761353+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKRGKQLSVNEWIELFKHYKDYLSHNITKKEFYYIYSKIRNSGDSLPSQKAMEYLSKKYRYYNLGMELKESQTGRAPKKGKGSGRPRKNKEEYDKQRNEV
IKEIDREVLEWLITDLFKEEILKKHKVDNLDELIEKIKEKFGTNITNKKIMKILGLPKSTFYYKLKKQSNDKNKAFVKHANIIKEAFEKQNGRYGRERLS
AYIFKTYGINMNPRTLGRAMNKLGLFCHVRTMCKKKRESKNTNVYYPNIANRDYNGLQNDIYASDVSYIPAPIDVEGRHVYLSILIHHRTKKVVSYNLSI
NNDTNLVMSHIVKTKFPKDFIIHTDHGAAYSSIEYLDYIKQQGGIVSMSRIGNSLDNREAEYFFSILKSEMFINFEKKVKEITFGELKEYIKNFIEWYNS
ERILRKFKWKTPQELWGVYNKHNFLV

 

Blast result :
Comments
ISMmy2 is 60% aa similar to IS1138. The ends of this IS are not the expected ends for one IS3 family member.
The original host contains 6 copies of this IS.
The other copies are 1373 bp long.
The direct repeats for the other copies are: GGT; TAA
References
1] Thiaucourt. F. (2006) Direct submission.