ISVisp1
- Family IS3
- Group IS3
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
DQ987704 | ND | Vibrio splendidus | Vibrio splendidus LGP32 |
DNA section
IS Length : 1267 bp
Ends
IR Length : 21/27
IRL : TGTAGTTGACCCGATCTAATGGACACCTTCAATTGTAATTGGAGGTGTTT
IRR : TGATCTTCACCCGATAAAATGGACACCCTATTATCTTTAACCCGTCGCTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTAAGACAGA | TTC | CCAACGCATG | 3 |
DNA sequence
TGTAGTTGACCCGATCTAATGGACACCTTCAATTGTAATTGGAGGTGTTTATGCCAGCTTATAAATCAGGTAAAAAAACTCAACAATATCTTACGGAATT
TAAGGTAACTGCTGTCCGACTTTCGCTTCGAGAAGGAGCTACAGTTAAAAGCGTGGCGCTATCATTAGATATCCACCCTTATATGCTTTCTAAATGGCGA
AAGGACTATAGAGAAGGGGTTATTATGGAAGATAAACGTAAGAAAAGGACTCAGATCCCGAGCCAGAAAACTGAGTCTAGTCGGATTGCAGAGCTTGAAC
GTCAGAACGAACAACTTAAGCTCGAGAATGACTTGCTAAAAAAGTGGCAACGATTCGTTGCCCAAGAAAATCGACAAAATTCCGATTCATAGCCCATTAC
AAAACGCGTTATTCCATTGTCTTGATGTGTCGTTTTCTATCTGTTTCTAAGTCGGGTTACTACGCATGGCTTGATAGAGAGCCAAGCCGCTACGATCAAG
AAGAGCAGGCTTTGAAGAAGCGCATAATTGAAGTGTTTACCCAGAGTCGAGAGACTTACGGTAGTCCACGAGTTCATGCAGAGCTGAGGCGCCAAGGAGT
TTTGGTTAGCCGCAAGCGTGTAGCTCGGATCATGAGAGAGCAAGGGCTAAGAGCGCGAAGTTATCGCATTTACATGAAAATGGCCAAGCTACATCGGTTC
TATCAATCGATTAAGAATATTAAAAAAGACACACCAAAACCAACGGCAGTTAATCAACAATGGTCTGGAGATCTAACGTATATAAAGCAAGGTAAACGTT
GGATGTATCTAGCGGTCGTTATCGATCTTTACTCGCGTAAAATCGTCGGTTGGTCGCTTGGTAGTAAGAAGAGTACACAACTAACGATGAGTTCGTTGAG
AATGGCAATTAGAAATCGAAAGCCACAAGAGCGATTATTATTTCATACCGACAGAGGCTCTGAATATCGAGCCCATGAAGTTCAAGCTTTATTATCAAAA
AATGGAATTGTCCCAAGTATGAATCGTCCAGGTCATTGCACTGATAATGCGGAGGTGGAGTCGTTCTTCCATACGCTCAAAGGCGACATAATTAGGAAAA
ATAGTTTTAAAAGTGAGAAGCAGCTTAGAGATAAACTTGCCGGTTATATCCAGCATTTTTATAACCGTTATAGACTGCACTCAAGTCTTGGATATCGAAC
CCCGCATGAATATGAAGTAGCGACGGGTTAAAGATAATAGGGTGTCCATTTTATCGGGTGAAGATCA
TAAGGTAACTGCTGTCCGACTTTCGCTTCGAGAAGGAGCTACAGTTAAAAGCGTGGCGCTATCATTAGATATCCACCCTTATATGCTTTCTAAATGGCGA
AAGGACTATAGAGAAGGGGTTATTATGGAAGATAAACGTAAGAAAAGGACTCAGATCCCGAGCCAGAAAACTGAGTCTAGTCGGATTGCAGAGCTTGAAC
GTCAGAACGAACAACTTAAGCTCGAGAATGACTTGCTAAAAAAGTGGCAACGATTCGTTGCCCAAGAAAATCGACAAAATTCCGATTCATAGCCCATTAC
AAAACGCGTTATTCCATTGTCTTGATGTGTCGTTTTCTATCTGTTTCTAAGTCGGGTTACTACGCATGGCTTGATAGAGAGCCAAGCCGCTACGATCAAG
AAGAGCAGGCTTTGAAGAAGCGCATAATTGAAGTGTTTACCCAGAGTCGAGAGACTTACGGTAGTCCACGAGTTCATGCAGAGCTGAGGCGCCAAGGAGT
TTTGGTTAGCCGCAAGCGTGTAGCTCGGATCATGAGAGAGCAAGGGCTAAGAGCGCGAAGTTATCGCATTTACATGAAAATGGCCAAGCTACATCGGTTC
TATCAATCGATTAAGAATATTAAAAAAGACACACCAAAACCAACGGCAGTTAATCAACAATGGTCTGGAGATCTAACGTATATAAAGCAAGGTAAACGTT
GGATGTATCTAGCGGTCGTTATCGATCTTTACTCGCGTAAAATCGTCGGTTGGTCGCTTGGTAGTAAGAAGAGTACACAACTAACGATGAGTTCGTTGAG
AATGGCAATTAGAAATCGAAAGCCACAAGAGCGATTATTATTTCATACCGACAGAGGCTCTGAATATCGAGCCCATGAAGTTCAAGCTTTATTATCAAAA
AATGGAATTGTCCCAAGTATGAATCGTCCAGGTCATTGCACTGATAATGCGGAGGTGGAGTCGTTCTTCCATACGCTCAAAGGCGACATAATTAGGAAAA
ATAGTTTTAAAAGTGAGAAGCAGCTTAGAGATAAACTTGCCGGTTATATCCAGCATTTTTATAACCGTTATAGACTGCACTCAAGTCTTGGATATCGAAC
CCCGCATGAATATGAAGTAGCGACGGGTTAAAGATAATAGGGTGTCCATTTTATCGGGTGAAGATCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
342 bp | 113 aa | 51 | 392 | + | No |
Description : First part of the transposase
ORF sequence :
MPAYKSGKKTQQYLTEFKVTAVRLSLREGATVKSVALSLDIHPYMLSKWRKDYREGVIMEDKRKKRTQIPSQKTESSRIAELERQNEQLKLENDLLKKWQ
RFVAQENRQNSDS
RFVAQENRQNSDS
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
900 bp | 299 aa | 332 | 1231 | + | No |
Description : Second part of the transposase
ORF sequence :
VATIRCPRKSTKFRFIAHYKTRYSIVLMCRFLSVSKSGYYAWLDREPSRYDQEEQALKKRIIEVFTQSRETYGSPRVHAELRRQGVLVSRKRVARIMREQ
GLRARSYRIYMKMAKLHRFYQSIKNIKKDTPKPTAVNQQWSGDLTYIKQGKRWMYLAVVIDLYSRKIVGWSLGSKKSTQLTMSSLRMAIRNRKPQERLLF
HTDRGSEYRAHEVQALLSKNGIVPSMNRPGHCTDNAEVESFFHTLKGDIIRKNSFKSEKQLRDKLAGYIQHFYNRYRLHSSLGYRTPHEYEVATG
GLRARSYRIYMKMAKLHRFYQSIKNIKKDTPKPTAVNQQWSGDLTYIKQGKRWMYLAVVIDLYSRKIVGWSLGSKKSTQLTMSSLRMAIRNRKPQERLLF
HTDRGSEYRAHEVQALLSKNGIVPSMNRPGHCTDNAEVESFFHTLKGDIIRKNSFKSEKQLRDKLAGYIQHFYNRYRLHSSLGYRTPHEYEVATG
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1181 bp | 393 aa | 51 | 1231 | + | Yes |
Chemistry : DDE
ORF sequence :
MPAYKSGKKTQQYLTEFKVTAVRLSLREGATVKSVALSLDIHPYMLSKWRKDYREGVIMEDKRKKRTQIPSQKTESSRIAELERQNEQLKLENDLLKKVA
TIRCPRKSTKFRFIAHYKTRYSIVLMCRFLSVSKSGYYAWLDREPSRYDQEEQALKKRIIEVFTQSRETYGSPRVHAELRRQGVLVSRKRVARIMREQGL
RARSYRIYMKMAKLHRFYQSIKNIKKDTPKPTAVNQQWSGDLTYIKQGKRWMYLAVVIDLYSRKIVGWSLGSKKSTQLTMSSLRMAIRNRKPQERLLFHT
DRGSEYRAHEVQALLSKNGIVPSMNRPGHCTDNAEVESFFHTLKGDIIRKNSFKSEKQLRDKLAGYIQHFYNRYRLHSSLGYRTPHEYEVATG
TIRCPRKSTKFRFIAHYKTRYSIVLMCRFLSVSKSGYYAWLDREPSRYDQEEQALKKRIIEVFTQSRETYGSPRVHAELRRQGVLVSRKRVARIMREQGL
RARSYRIYMKMAKLHRFYQSIKNIKKDTPKPTAVNQQWSGDLTYIKQGKRWMYLAVVIDLYSRKIVGWSLGSKKSTQLTMSSLRMAIRNRKPQERLLFHT
DRGSEYRAHEVQALLSKNGIVPSMNRPGHCTDNAEVESFFHTLKGDIIRKNSFKSEKQLRDKLAGYIQHFYNRYRLHSSLGYRTPHEYEVATG
Blast result :
Comments
ISVisp1 is 52%(ORFA) aa similar to IS1501 and 57%(ORFB) to IS1953. The third ORF is a fusion ORF in silico.
References
1] D. Mazel (2006) Direct submission.