ISFal3B

  • Family IS5
  • Group IS1031
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008278 ND Frankia alni
Frankia alni ACN14a
DNA section
IS Length : 958 bp

Ends


IR Length : 17/21

IRL : CAGAAGCTGTCTGGGATCTTGATGTTTGTGTGCTGAGTGTGGTCGCCTGG
IRR : CAGAAAGAGACCCTCGCGGCGGCGGTCTTCGACCCGGAGGAGTACGGCAT

Insertion site


Left flankDirect repeatRight flankDR Length
CTCTCGGCTGGTAGCAGCGTCTAGAGGTGTCAGGAATGGCT0

DNA sequence

CAGAAGCTGTCTGGGATCTTGATGTTTGTGTGCTGAGTGTGGTCGCCTGGGTCGAGGTCGACGTGGTGGTGCGGTCGGTGGTGGACGGTCTGGTGATGGT
TCGGTCTGACCCGTATCCCTCTGATCTGTCCGACGCGGAGTGGGCGTTGGTGGAGCCGTTGCTGCCGCCGGTGTCGAAGGATGGGCGGAAGGAGGCGCAT
CCTCGCCGGGAGATCGTGAACCCGATTCTGTATGTGACGCACGCGGGGTGTAGCTGGCGGTCGTTGCCGCGGGACTTCCCGCCGTGGGAGACGGTCTACG
GCTTCTTCGCCCGCTGGCATGACAAGGGCGTGATCGCGAGGGTTCATGATGCGTTGCGGGACACCTCCCGTGAGCTCGAGGGCAGGGATCGGCAGCCGAC
GGCGGGGGTGATCGACCCGCAGTCGGTGAAGGGCGCCCAGACGGTGGATGCGGCGACCCGCGGCTACGACGCGGGCAAGAAGGTGAACGGTCGTAAGCGG
TTCCTCATCACGGACACCCTCGGGCTGCTGCTCAGCGTGCTCGTGTTGCCAGCCAGTGTCCAGGACCGCGACGGCGGCAGACGAATCATGGTGGATCACT
ACTTCGATCACTGGCAGTGCCGTCATTTGTTCGCGGACGGTGGATTCGCCGGACGTTTCGTCGACTGGGCCGGTGAGGTCATGAAGACCAGCGTCGACAT
CGTCCGGAAGAACCCCGGGCAGCGCGGTTTCGAGGCTCTCCCGAAACGTTGGGTCGTGGAACGAACCTTCTCGTGGATCACCGCGCACCGCCGGCTCGCG
CGCGACTATGAAAGAAAACCCGCCACCTCCGAGACCTTCATCCGCCTCGCCATGATCCGAACCATGGTGAGGCGTCTTCCGCGCCAGCTCGCGCACAGCG
GCCAGACCACACCATCAACTACAGAGGGTAGCCGGAACAAGATCTAAAACAGCTTCTCAGAGGTGTCAGGAATGGCTGTCGAAATAGCGGTCGCGGAGTT
CGTTGTAGGTGTCGTCAGCGTGCATCTGCAGGATGGCGGCATTGACCTTCTTTCGCAGGGTGCTGCCGGTGGGGAAGGCGATGCCGTACTCCTCCGGGTC
GAAGACCGCCGCCGCGAGGGTCTCTTTCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
31 bp413 aa300+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGRPLVRKKVEQSPPLGPDTNRDLRYVEERGIVQQCEEAGELLLSQQAVGDKRRSHPFDERRPSIRGEATHPARVNSPKYRATAQRLGRHPLSAGSSVSE
AVWDLDVCVLSVVAWVEVDVVVRSVVDGLVMVRSDPYPSDLSDAEWALVEPLLPPVSKDGRKEAHPRREIVNPILYVTHAGCSWRSLPRDFPPWETVYGF
FARWHDKGVIARVHDALRDTSRELEGRDRQPTAGVIDPQSVKGAQTVDAATRGYDAGKKVNGRKRFLITDTLGLLLSVLVLPASVQDRDGGRRIMVDHYF
DHWQCRHLFADGGFAGRFVDWAGEVMKTSVDIVRKNPGQRGFEALPKRWVVERTFSWITAHRRLARDYERKPATSETFIRLAMIRTMVRRLPRQLAHSGQ
TTPSTTEGSRNKI

 

Blast result :
Comments
ISFal3A and ISFal3B are 59% aa similar to IS4811.
There are no STOP codon in this transposase.
There are 2 copies : ISFal3A and ISFal3B in Frankia alni ACN14a genome. These 2 copies might form a transposon.
ISFal3B is 99% DNA similar to ISFal3A from position2 to position803.
References
1] Normand, P. (2006) Unpublished.