ISFal3B
- Family IS5
- Group IS1031
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008278 | ND | Frankia alni | Frankia alni ACN14a |
DNA section
IS Length : 958 bp
Ends
IR Length : 17/21
IRL : CAGAAGCTGTCTGGGATCTTGATGTTTGTGTGCTGAGTGTGGTCGCCTGG
IRR : CAGAAAGAGACCCTCGCGGCGGCGGTCTTCGACCCGGAGGAGTACGGCAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTCTCGGCTGGTAGCAGCGTCT | AGAGGTGTCAGGAATGGCT | 0 |
DNA sequence
CAGAAGCTGTCTGGGATCTTGATGTTTGTGTGCTGAGTGTGGTCGCCTGGGTCGAGGTCGACGTGGTGGTGCGGTCGGTGGTGGACGGTCTGGTGATGGT
TCGGTCTGACCCGTATCCCTCTGATCTGTCCGACGCGGAGTGGGCGTTGGTGGAGCCGTTGCTGCCGCCGGTGTCGAAGGATGGGCGGAAGGAGGCGCAT
CCTCGCCGGGAGATCGTGAACCCGATTCTGTATGTGACGCACGCGGGGTGTAGCTGGCGGTCGTTGCCGCGGGACTTCCCGCCGTGGGAGACGGTCTACG
GCTTCTTCGCCCGCTGGCATGACAAGGGCGTGATCGCGAGGGTTCATGATGCGTTGCGGGACACCTCCCGTGAGCTCGAGGGCAGGGATCGGCAGCCGAC
GGCGGGGGTGATCGACCCGCAGTCGGTGAAGGGCGCCCAGACGGTGGATGCGGCGACCCGCGGCTACGACGCGGGCAAGAAGGTGAACGGTCGTAAGCGG
TTCCTCATCACGGACACCCTCGGGCTGCTGCTCAGCGTGCTCGTGTTGCCAGCCAGTGTCCAGGACCGCGACGGCGGCAGACGAATCATGGTGGATCACT
ACTTCGATCACTGGCAGTGCCGTCATTTGTTCGCGGACGGTGGATTCGCCGGACGTTTCGTCGACTGGGCCGGTGAGGTCATGAAGACCAGCGTCGACAT
CGTCCGGAAGAACCCCGGGCAGCGCGGTTTCGAGGCTCTCCCGAAACGTTGGGTCGTGGAACGAACCTTCTCGTGGATCACCGCGCACCGCCGGCTCGCG
CGCGACTATGAAAGAAAACCCGCCACCTCCGAGACCTTCATCCGCCTCGCCATGATCCGAACCATGGTGAGGCGTCTTCCGCGCCAGCTCGCGCACAGCG
GCCAGACCACACCATCAACTACAGAGGGTAGCCGGAACAAGATCTAAAACAGCTTCTCAGAGGTGTCAGGAATGGCTGTCGAAATAGCGGTCGCGGAGTT
CGTTGTAGGTGTCGTCAGCGTGCATCTGCAGGATGGCGGCATTGACCTTCTTTCGCAGGGTGCTGCCGGTGGGGAAGGCGATGCCGTACTCCTCCGGGTC
GAAGACCGCCGCCGCGAGGGTCTCTTTCTG
TCGGTCTGACCCGTATCCCTCTGATCTGTCCGACGCGGAGTGGGCGTTGGTGGAGCCGTTGCTGCCGCCGGTGTCGAAGGATGGGCGGAAGGAGGCGCAT
CCTCGCCGGGAGATCGTGAACCCGATTCTGTATGTGACGCACGCGGGGTGTAGCTGGCGGTCGTTGCCGCGGGACTTCCCGCCGTGGGAGACGGTCTACG
GCTTCTTCGCCCGCTGGCATGACAAGGGCGTGATCGCGAGGGTTCATGATGCGTTGCGGGACACCTCCCGTGAGCTCGAGGGCAGGGATCGGCAGCCGAC
GGCGGGGGTGATCGACCCGCAGTCGGTGAAGGGCGCCCAGACGGTGGATGCGGCGACCCGCGGCTACGACGCGGGCAAGAAGGTGAACGGTCGTAAGCGG
TTCCTCATCACGGACACCCTCGGGCTGCTGCTCAGCGTGCTCGTGTTGCCAGCCAGTGTCCAGGACCGCGACGGCGGCAGACGAATCATGGTGGATCACT
ACTTCGATCACTGGCAGTGCCGTCATTTGTTCGCGGACGGTGGATTCGCCGGACGTTTCGTCGACTGGGCCGGTGAGGTCATGAAGACCAGCGTCGACAT
CGTCCGGAAGAACCCCGGGCAGCGCGGTTTCGAGGCTCTCCCGAAACGTTGGGTCGTGGAACGAACCTTCTCGTGGATCACCGCGCACCGCCGGCTCGCG
CGCGACTATGAAAGAAAACCCGCCACCTCCGAGACCTTCATCCGCCTCGCCATGATCCGAACCATGGTGAGGCGTCTTCCGCGCCAGCTCGCGCACAGCG
GCCAGACCACACCATCAACTACAGAGGGTAGCCGGAACAAGATCTAAAACAGCTTCTCAGAGGTGTCAGGAATGGCTGTCGAAATAGCGGTCGCGGAGTT
CGTTGTAGGTGTCGTCAGCGTGCATCTGCAGGATGGCGGCATTGACCTTCTTTCGCAGGGTGCTGCCGGTGGGGAAGGCGATGCCGTACTCCTCCGGGTC
GAAGACCGCCGCCGCGAGGGTCTCTTTCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
31 bp | 413 aa | 30 | 0 | + | No |
Chemistry : DDE
ORF sequence :
MGRPLVRKKVEQSPPLGPDTNRDLRYVEERGIVQQCEEAGELLLSQQAVGDKRRSHPFDERRPSIRGEATHPARVNSPKYRATAQRLGRHPLSAGSSVSE
AVWDLDVCVLSVVAWVEVDVVVRSVVDGLVMVRSDPYPSDLSDAEWALVEPLLPPVSKDGRKEAHPRREIVNPILYVTHAGCSWRSLPRDFPPWETVYGF
FARWHDKGVIARVHDALRDTSRELEGRDRQPTAGVIDPQSVKGAQTVDAATRGYDAGKKVNGRKRFLITDTLGLLLSVLVLPASVQDRDGGRRIMVDHYF
DHWQCRHLFADGGFAGRFVDWAGEVMKTSVDIVRKNPGQRGFEALPKRWVVERTFSWITAHRRLARDYERKPATSETFIRLAMIRTMVRRLPRQLAHSGQ
TTPSTTEGSRNKI
AVWDLDVCVLSVVAWVEVDVVVRSVVDGLVMVRSDPYPSDLSDAEWALVEPLLPPVSKDGRKEAHPRREIVNPILYVTHAGCSWRSLPRDFPPWETVYGF
FARWHDKGVIARVHDALRDTSRELEGRDRQPTAGVIDPQSVKGAQTVDAATRGYDAGKKVNGRKRFLITDTLGLLLSVLVLPASVQDRDGGRRIMVDHYF
DHWQCRHLFADGGFAGRFVDWAGEVMKTSVDIVRKNPGQRGFEALPKRWVVERTFSWITAHRRLARDYERKPATSETFIRLAMIRTMVRRLPRQLAHSGQ
TTPSTTEGSRNKI
Blast result :
Comments
ISFal3A and ISFal3B are 59% aa similar to IS4811.
There are no STOP codon in this transposase.
There are 2 copies : ISFal3A and ISFal3B in Frankia alni ACN14a genome. These 2 copies might form a transposon.
ISFal3B is 99% DNA similar to ISFal3A from position2 to position803.
There are no STOP codon in this transposase.
There are 2 copies : ISFal3A and ISFal3B in Frankia alni ACN14a genome. These 2 copies might form a transposon.
ISFal3B is 99% DNA similar to ISFal3A from position2 to position803.
References
1] Normand, P. (2006) Unpublished.