ISFal3A

  • Family IS5
  • Group IS1031
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008278 ND Frankia alni
Frankia alni ACN14a
DNA section
IS Length : 1087 bp

Ends


IR Length : 13/19

IRL : GAGAAGCTGTTTGGGATCTTGATGTTTGTGTGCTGAGTGTGGTCGCCTGG
IRR : GAGACCGTGTTTGGTCGCTGACGGCCCGTGATTGCGATGGGTAACGGAGC

Insertion site


Left flankDirect repeatRight flankDR Length
GTCCGGTCGGGCGGCATCCGCTCAGTCGCCTGCGAAGAGCCGGT0

DNA sequence

GAGAAGCTGTTTGGGATCTTGATGTTTGTGTGCTGAGTGTGGTCGCCTGGGTCGAGGTCGACGTGGTGGTGCGGTCGGTGGTGGACGGTCTGGTGATGGT
TCGGTCTGACCCGTATCCCTCTGATCTGTCCGACGCGGAGTGGGCGTTGGTGGAGCCGTTGCTGCCGCCGGTGTCGAAGGATGGGCGGAAGGAGGCGCAT
CCTCGCCGGGAGATCGTGAACGCGATTCTGTATGTGACGCACGCGGGGTGTAGCTGGCGGTCGTTGCCGCGGGACTTCCCGCCGTGGGAGACGGTCTACG
GCTTCTTCGCCCGCTGGCATGACAAGGGCGTGATCGCGAGGGTTCATGATGCGTTGCGGGACACCTCCCGTGAGCTCGAGGGCAGGGATCGGCAGCCGAC
GGCGGGGGTGATCGACCCGCAGTCGGTGAAGGGCGCCCAGACGGTGGATGCGGCGACCCGCGGCTACGACGCGGGCAAGAAGGTGAACGGTCGTAAGCGG
TTCCTCATCACGGACACCCTCGGGCTGCTGCTCAGCGTGCTCGTGTTGCCAGCCAGTGTCCAGGACCGCGACGGCGGCAGACGAATCATGGTGGATCACT
ACTTCGATCACTGGCAGTGCCGTCATTTGTTCGCGGACGGTGGATTCGCCGGACGTTTCGTCGACTGGGCCGGTGAGGTCATGAAGACCAGCGTCGACAT
CGTCCGGAAGAACCCCGGGCAGCGCGGTTTCGAGGCTCTCCCGAAACGTTGGGTCGTGGAACGAACCTTCTCGTGGATCACCGCGCACCGCCGGCTCGCG
CGCATCTCCTTCACCCGACCCGACGTCGTCGCGCAGTCCGGGCAGCGGGCCACCGTCCCCGCCGCCGCGGCCACGTGCACCGTCGACGAACCGTCCGCCT
CCCGCTCCACCAACTCGACCTCGAAACCCGCCAGGCCCAGCAACCCGGCGCCCGTCTCCTGACGATCATTTTCCTAGACAAGAAACGATCTTTACAGGCA
GGCGGGTGCGTCCCTTTCCGCACCCCTCGACGGTAACGCTCCGTTACCCATCGCAATCACGGGCCGTCAGCGACCAAACACGGTCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
934 bp310 aa29962+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLSVVAWVEVDVVVRSVVDGLVMVRSDPYPSDLSDAEWALVEPLLPPVSKDGRKEAHPRREIVNAILYVTHAGCSWRSLPRDFPPWETVYGFFARWHDKG
VIARVHDALRDTSRELEGRDRQPTAGVIDPQSVKGAQTVDAATRGYDAGKKVNGRKRFLITDTLGLLLSVLVLPASVQDRDGGRRIMVDHYFDHWQCRHL
FADGGFAGRFVDWAGEVMKTSVDIVRKNPGQRGFEALPKRWVVERTFSWITAHRRLARISFTRPDVVAQSGQRATVPAAAATCTVDEPSASRSTNSTSKP
ARPSNPAPVS

 

Blast result :
Comments
ISFal3A and ISFal3B are 59% aa similar to IS4811. There are 2 copies : ISFal3A and ISFal3B in Frankia alni ACN14a genome. These 2 copies might form a transposon.
ISFal3B is 99% DNA similar to ISFal3A from position 2 to position 803.
References
1] Normand, P. (2006) Unpublished.