ISFal3A
- Family IS5
- Group IS1031
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008278 | ND | Frankia alni | Frankia alni ACN14a |
DNA section
IS Length : 1087 bp
Ends
IR Length : 13/19
IRL : GAGAAGCTGTTTGGGATCTTGATGTTTGTGTGCTGAGTGTGGTCGCCTGG
IRR : GAGACCGTGTTTGGTCGCTGACGGCCCGTGATTGCGATGGGTAACGGAGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTCCGGTCGGGCGGCATCCGCT | CAGTCGCCTGCGAAGAGCCGGT | 0 |
DNA sequence
GAGAAGCTGTTTGGGATCTTGATGTTTGTGTGCTGAGTGTGGTCGCCTGGGTCGAGGTCGACGTGGTGGTGCGGTCGGTGGTGGACGGTCTGGTGATGGT
TCGGTCTGACCCGTATCCCTCTGATCTGTCCGACGCGGAGTGGGCGTTGGTGGAGCCGTTGCTGCCGCCGGTGTCGAAGGATGGGCGGAAGGAGGCGCAT
CCTCGCCGGGAGATCGTGAACGCGATTCTGTATGTGACGCACGCGGGGTGTAGCTGGCGGTCGTTGCCGCGGGACTTCCCGCCGTGGGAGACGGTCTACG
GCTTCTTCGCCCGCTGGCATGACAAGGGCGTGATCGCGAGGGTTCATGATGCGTTGCGGGACACCTCCCGTGAGCTCGAGGGCAGGGATCGGCAGCCGAC
GGCGGGGGTGATCGACCCGCAGTCGGTGAAGGGCGCCCAGACGGTGGATGCGGCGACCCGCGGCTACGACGCGGGCAAGAAGGTGAACGGTCGTAAGCGG
TTCCTCATCACGGACACCCTCGGGCTGCTGCTCAGCGTGCTCGTGTTGCCAGCCAGTGTCCAGGACCGCGACGGCGGCAGACGAATCATGGTGGATCACT
ACTTCGATCACTGGCAGTGCCGTCATTTGTTCGCGGACGGTGGATTCGCCGGACGTTTCGTCGACTGGGCCGGTGAGGTCATGAAGACCAGCGTCGACAT
CGTCCGGAAGAACCCCGGGCAGCGCGGTTTCGAGGCTCTCCCGAAACGTTGGGTCGTGGAACGAACCTTCTCGTGGATCACCGCGCACCGCCGGCTCGCG
CGCATCTCCTTCACCCGACCCGACGTCGTCGCGCAGTCCGGGCAGCGGGCCACCGTCCCCGCCGCCGCGGCCACGTGCACCGTCGACGAACCGTCCGCCT
CCCGCTCCACCAACTCGACCTCGAAACCCGCCAGGCCCAGCAACCCGGCGCCCGTCTCCTGACGATCATTTTCCTAGACAAGAAACGATCTTTACAGGCA
GGCGGGTGCGTCCCTTTCCGCACCCCTCGACGGTAACGCTCCGTTACCCATCGCAATCACGGGCCGTCAGCGACCAAACACGGTCTC
TCGGTCTGACCCGTATCCCTCTGATCTGTCCGACGCGGAGTGGGCGTTGGTGGAGCCGTTGCTGCCGCCGGTGTCGAAGGATGGGCGGAAGGAGGCGCAT
CCTCGCCGGGAGATCGTGAACGCGATTCTGTATGTGACGCACGCGGGGTGTAGCTGGCGGTCGTTGCCGCGGGACTTCCCGCCGTGGGAGACGGTCTACG
GCTTCTTCGCCCGCTGGCATGACAAGGGCGTGATCGCGAGGGTTCATGATGCGTTGCGGGACACCTCCCGTGAGCTCGAGGGCAGGGATCGGCAGCCGAC
GGCGGGGGTGATCGACCCGCAGTCGGTGAAGGGCGCCCAGACGGTGGATGCGGCGACCCGCGGCTACGACGCGGGCAAGAAGGTGAACGGTCGTAAGCGG
TTCCTCATCACGGACACCCTCGGGCTGCTGCTCAGCGTGCTCGTGTTGCCAGCCAGTGTCCAGGACCGCGACGGCGGCAGACGAATCATGGTGGATCACT
ACTTCGATCACTGGCAGTGCCGTCATTTGTTCGCGGACGGTGGATTCGCCGGACGTTTCGTCGACTGGGCCGGTGAGGTCATGAAGACCAGCGTCGACAT
CGTCCGGAAGAACCCCGGGCAGCGCGGTTTCGAGGCTCTCCCGAAACGTTGGGTCGTGGAACGAACCTTCTCGTGGATCACCGCGCACCGCCGGCTCGCG
CGCATCTCCTTCACCCGACCCGACGTCGTCGCGCAGTCCGGGCAGCGGGCCACCGTCCCCGCCGCCGCGGCCACGTGCACCGTCGACGAACCGTCCGCCT
CCCGCTCCACCAACTCGACCTCGAAACCCGCCAGGCCCAGCAACCCGGCGCCCGTCTCCTGACGATCATTTTCCTAGACAAGAAACGATCTTTACAGGCA
GGCGGGTGCGTCCCTTTCCGCACCCCTCGACGGTAACGCTCCGTTACCCATCGCAATCACGGGCCGTCAGCGACCAAACACGGTCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
934 bp | 310 aa | 29 | 962 | + | No |
Chemistry : DDE
ORF sequence :
MLSVVAWVEVDVVVRSVVDGLVMVRSDPYPSDLSDAEWALVEPLLPPVSKDGRKEAHPRREIVNAILYVTHAGCSWRSLPRDFPPWETVYGFFARWHDKG
VIARVHDALRDTSRELEGRDRQPTAGVIDPQSVKGAQTVDAATRGYDAGKKVNGRKRFLITDTLGLLLSVLVLPASVQDRDGGRRIMVDHYFDHWQCRHL
FADGGFAGRFVDWAGEVMKTSVDIVRKNPGQRGFEALPKRWVVERTFSWITAHRRLARISFTRPDVVAQSGQRATVPAAAATCTVDEPSASRSTNSTSKP
ARPSNPAPVS
VIARVHDALRDTSRELEGRDRQPTAGVIDPQSVKGAQTVDAATRGYDAGKKVNGRKRFLITDTLGLLLSVLVLPASVQDRDGGRRIMVDHYFDHWQCRHL
FADGGFAGRFVDWAGEVMKTSVDIVRKNPGQRGFEALPKRWVVERTFSWITAHRRLARISFTRPDVVAQSGQRATVPAAAATCTVDEPSASRSTNSTSKP
ARPSNPAPVS
Blast result :
Comments
ISFal3A and ISFal3B are 59% aa similar to IS4811. There are 2 copies : ISFal3A and ISFal3B in Frankia alni ACN14a genome. These 2 copies might form a transposon.
ISFal3B is 99% DNA similar to ISFal3A from position 2 to position 803.
ISFal3B is 99% DNA similar to ISFal3A from position 2 to position 803.
References
1] Normand, P. (2006) Unpublished.