ISFal2

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008278 ND Frankia alni
Frankia alni ACN14a
DNA section
IS Length : 826 bp

Ends


IR Length : 13/19

IRL : GGCTCTGTTGCATCGGCGGAGTCCGCTGTCCAGCGGCCGTCGATCGGTCA
IRR : GACACTGTTGCATTACGGGGAAGCTGAACATGCCAGCGGCTGGGGCGAGC

Insertion site


Left flankDirect repeatRight flankDR Length
GGAACAACCATCCGGCTCGGACTCCAGCTCACC0

DNA sequence

GGCTCTGTTGCATCGGCGGAGTCCGCTGTCCAGCGGCCGTCGATCGGTCATGATCGAGGGATGCGTCGACGTCGTGGCTGTCCGCCGGTTCCGGTGTCGG
AGTTCGCGGGGTTCCGGTTCCCGCCGGAGGCGATCGTCCTGGCGGTGCGGTGGTATCTGCGGTTCGCGTTGTCGTACCGGGATGTCGAGGAGCTGCTCGC
GGAACGCGGCCTCGAAGTTGATCACGTGACTGTCTACCGGTGGGTGCAGCGCTTCGTACCCCTGCTTGCCGAGGCGGCCAGGCCGTGTCGGCATCGGCCG
GACGACAGGTGGTTCGTGGATGAGACGTATGTGAAGGTCGCCGGCCGCTGGACCTACCTGTACCGTGCCGTTGACCAGCACGGACAGGTCATCGACGTCT
TCGCCAGCGAACGACGCGACCAAACCGCCGCCCGCCGCTTCTTCACCCGGGCGCTGTCTCATGGCCGTCGACCGGTCGAGGTCACCACCGACAAGGCCGC
CGTTTACCCGCGGGTCCTCGACGAGCTGCTCCCGGAGGCCTGCCACGTCGACGCCGCCCGGGAGAACAACCGGATCGAAGCCGACCACGGCCGGTTGAAA
GCACGGCTGCGGCCTATGCGCGGGCTGAAACGGCTGCGCTCGGTCCAGACCGTCAGCGCCGGACACGCCCTGATCCAGAACATCCGCCGCGGCCACTATG
AACTCGCCATCGACGCCCACCCGCCGCTGCGACTGGCAGCCGCGTTCACCGAACTCGCCGCAGCCGTTTGACCGGCGCTCGCCCCAGCCGCTGGCATGTT
CAGCTTCCCCGTAATGCAACAGTGTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
711 bp236 aa61771+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRRRRGCPPVPVSEFAGFRFPPEAIVLAVRWYLRFALSYRDVEELLAERGLEVDHVTVYRWVQRFVPLLAEAARPCRHRPDDRWFVDETYVKVAGRWTYL
YRAVDQHGQVIDVFASERRDQTAARRFFTRALSHGRRPVEVTTDKAAVYPRVLDELLPEACHVDAARENNRIEADHGRLKARLRPMRGLKRLRSVQTVSA
GHALIQNIRRGHYELAIDAHPPLRLAAAFTELAAAV

 

Blast result :
Comments
ISFal2 is 58% aa similar to IS6100.There are on complete copy and 3 partial copies in Frankia alni ACN14a genome.
References
1] Normand, P. (2006) Unpublished