ISFal2
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008278 | ND | Frankia alni | Frankia alni ACN14a |
DNA section
IS Length : 826 bp
Ends
IR Length : 13/19
IRL : GGCTCTGTTGCATCGGCGGAGTCCGCTGTCCAGCGGCCGTCGATCGGTCA
IRR : GACACTGTTGCATTACGGGGAAGCTGAACATGCCAGCGGCTGGGGCGAGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGAACAACCATCCG | GCTCGGACTCCAGCTCACC | 0 |
DNA sequence
GGCTCTGTTGCATCGGCGGAGTCCGCTGTCCAGCGGCCGTCGATCGGTCATGATCGAGGGATGCGTCGACGTCGTGGCTGTCCGCCGGTTCCGGTGTCGG
AGTTCGCGGGGTTCCGGTTCCCGCCGGAGGCGATCGTCCTGGCGGTGCGGTGGTATCTGCGGTTCGCGTTGTCGTACCGGGATGTCGAGGAGCTGCTCGC
GGAACGCGGCCTCGAAGTTGATCACGTGACTGTCTACCGGTGGGTGCAGCGCTTCGTACCCCTGCTTGCCGAGGCGGCCAGGCCGTGTCGGCATCGGCCG
GACGACAGGTGGTTCGTGGATGAGACGTATGTGAAGGTCGCCGGCCGCTGGACCTACCTGTACCGTGCCGTTGACCAGCACGGACAGGTCATCGACGTCT
TCGCCAGCGAACGACGCGACCAAACCGCCGCCCGCCGCTTCTTCACCCGGGCGCTGTCTCATGGCCGTCGACCGGTCGAGGTCACCACCGACAAGGCCGC
CGTTTACCCGCGGGTCCTCGACGAGCTGCTCCCGGAGGCCTGCCACGTCGACGCCGCCCGGGAGAACAACCGGATCGAAGCCGACCACGGCCGGTTGAAA
GCACGGCTGCGGCCTATGCGCGGGCTGAAACGGCTGCGCTCGGTCCAGACCGTCAGCGCCGGACACGCCCTGATCCAGAACATCCGCCGCGGCCACTATG
AACTCGCCATCGACGCCCACCCGCCGCTGCGACTGGCAGCCGCGTTCACCGAACTCGCCGCAGCCGTTTGACCGGCGCTCGCCCCAGCCGCTGGCATGTT
CAGCTTCCCCGTAATGCAACAGTGTC
AGTTCGCGGGGTTCCGGTTCCCGCCGGAGGCGATCGTCCTGGCGGTGCGGTGGTATCTGCGGTTCGCGTTGTCGTACCGGGATGTCGAGGAGCTGCTCGC
GGAACGCGGCCTCGAAGTTGATCACGTGACTGTCTACCGGTGGGTGCAGCGCTTCGTACCCCTGCTTGCCGAGGCGGCCAGGCCGTGTCGGCATCGGCCG
GACGACAGGTGGTTCGTGGATGAGACGTATGTGAAGGTCGCCGGCCGCTGGACCTACCTGTACCGTGCCGTTGACCAGCACGGACAGGTCATCGACGTCT
TCGCCAGCGAACGACGCGACCAAACCGCCGCCCGCCGCTTCTTCACCCGGGCGCTGTCTCATGGCCGTCGACCGGTCGAGGTCACCACCGACAAGGCCGC
CGTTTACCCGCGGGTCCTCGACGAGCTGCTCCCGGAGGCCTGCCACGTCGACGCCGCCCGGGAGAACAACCGGATCGAAGCCGACCACGGCCGGTTGAAA
GCACGGCTGCGGCCTATGCGCGGGCTGAAACGGCTGCGCTCGGTCCAGACCGTCAGCGCCGGACACGCCCTGATCCAGAACATCCGCCGCGGCCACTATG
AACTCGCCATCGACGCCCACCCGCCGCTGCGACTGGCAGCCGCGTTCACCGAACTCGCCGCAGCCGTTTGACCGGCGCTCGCCCCAGCCGCTGGCATGTT
CAGCTTCCCCGTAATGCAACAGTGTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
711 bp | 236 aa | 61 | 771 | + | No |
Chemistry : DDE
ORF sequence :
MRRRRGCPPVPVSEFAGFRFPPEAIVLAVRWYLRFALSYRDVEELLAERGLEVDHVTVYRWVQRFVPLLAEAARPCRHRPDDRWFVDETYVKVAGRWTYL
YRAVDQHGQVIDVFASERRDQTAARRFFTRALSHGRRPVEVTTDKAAVYPRVLDELLPEACHVDAARENNRIEADHGRLKARLRPMRGLKRLRSVQTVSA
GHALIQNIRRGHYELAIDAHPPLRLAAAFTELAAAV
YRAVDQHGQVIDVFASERRDQTAARRFFTRALSHGRRPVEVTTDKAAVYPRVLDELLPEACHVDAARENNRIEADHGRLKARLRPMRGLKRLRSVQTVSA
GHALIQNIRRGHYELAIDAHPPLRLAAAFTELAAAV
Blast result :
Comments
ISFal2 is 58% aa similar to IS6100.There are on complete copy and 3 partial copies in Frankia alni ACN14a genome.
References
1] Normand, P. (2006) Unpublished