ISSod7
- Family IS4
- Group IS4
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_004347 | ND | Shewanella oneidensis | Shewanella oneidensis MR-1 |
DNA section
IS Length : 1419 bp
Ends
IR Length : 22/26
IRL : TAATGCCGATCAGTTAAGACAGATCGCTTGACGATCTCGCTAAAAAGATC
IRR : TAATGCCGTTCACTTAAGAGTGAACGGCATTTTTCTTTGATCTAACCGGA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AAAAACTCC | GACTAAATGCC | TGTTTTTAA | 11 |
DNA sequence
TAATGCCGATCAGTTAAGACAGATCGCTTGACGATCTCGCTAAAAAGATCAAAATCCGATGACCTCATGTCATCGGATTTTTTATGCAACTCTCAGAAGC
ACTTGCTCGCACTCATATTACCCGCCTAACCGAATTCACCTGCCTCGCTGATGTGTTAGAGCCTGAGTTAATTCAATCCTGTTTAGACTCACAAGGCGTT
GCTACTCTCAGACGACGCAAATTGCCGATGGACGCGATGATTTGGGCCGTTATCGGAATGGCCTTGTTCCGAGGGGAGTCTGTTCGGTCACTCATCAACA
AACTCGACATTGTTTTGCCGCAAGAGATTGATTATGTTGCCCGTAGTGCCGTGACTCAGGCGCGTAAACGATTAGGCAGTGAGGTCGTTCGAGAAGTGTT
CAGCCGTAGCGCGAATACCTGGCACGCGAGAGCCGAACACCCTCATTGGTGTGGTCTGAACCTGTATGGCGTCGATGGTGTGGTGTGGCGGACACCCGAT
AGTGTTCAAAATCAAGCAGCCTTTGGACGAACCGCCAACGCTTCCGGCGAAGCGGCTTATCCGCAAATTCGCATGGTTTGCCTGATGGAGTTAAGCAGCC
ATTTGTTGGTCAACAGCGCCTTTGATTCGGTTGTCGAAAATGAAATGAACTTAGCCTCTCAGCTCATTTCTAGCATCCCCAATCACAGTCTAACCCTATT
TGACCGAGGATTTTATTCGCTCGGCCTGCTGCACGCTTGGCAGCAAGCACAACCTAATAGCCACTGGTTGTTGCCATTGAAGAAAGGCACTCAATATGAG
GTGGTTAGAACGCTGGGAAAACATGACCAGTGGGTGAAACTCACCACCACGCCTCAAGCAAGAAAGAAATGGCCGCAGCTCCCTGACACCCTTGAAGCGC
GCTTACTGACTAAGACGGTGAAAGGTAAGTCAGTCGCCATATTGACCTCGTTAACAGACCCAATGCGTTACCCAAGTGAAGACATCGTCGACTTATATGC
CCATCGTTGGGAAATCGAACTGGGCTACAGAGAGATGAAACAACATTTACTGGAGAGCCGTTTTACGCTCCGCAGCCAACTGCCTGAGCTGGTGTTCCAA
GAGCTATGGGGGGTGCTACTGGCCTACAATCTCATTAGATACAAGATGTTACTGATGGCCAAAAGCTTACCATCGGTTCATCCCAATCAACTGAGTTTTC
GTGATGCAGCGAGTCATATCATCTTCAAGTTGACACAGTTGTCATCACAAACGCCGGGAAATGTTCCCAGAGACGTATTGGATATAGAACGCAATGCACG
ACAATTTAAATTGGATGGTAAACGGGAAAGGGCTTATCCAAGGATCCTTAAAATGAGCAAAAATAAGTTTCCGGTTAGATCAAAGAAAAATGCCGTTCAC
TCTTAAGTGAACGGCATTA
ACTTGCTCGCACTCATATTACCCGCCTAACCGAATTCACCTGCCTCGCTGATGTGTTAGAGCCTGAGTTAATTCAATCCTGTTTAGACTCACAAGGCGTT
GCTACTCTCAGACGACGCAAATTGCCGATGGACGCGATGATTTGGGCCGTTATCGGAATGGCCTTGTTCCGAGGGGAGTCTGTTCGGTCACTCATCAACA
AACTCGACATTGTTTTGCCGCAAGAGATTGATTATGTTGCCCGTAGTGCCGTGACTCAGGCGCGTAAACGATTAGGCAGTGAGGTCGTTCGAGAAGTGTT
CAGCCGTAGCGCGAATACCTGGCACGCGAGAGCCGAACACCCTCATTGGTGTGGTCTGAACCTGTATGGCGTCGATGGTGTGGTGTGGCGGACACCCGAT
AGTGTTCAAAATCAAGCAGCCTTTGGACGAACCGCCAACGCTTCCGGCGAAGCGGCTTATCCGCAAATTCGCATGGTTTGCCTGATGGAGTTAAGCAGCC
ATTTGTTGGTCAACAGCGCCTTTGATTCGGTTGTCGAAAATGAAATGAACTTAGCCTCTCAGCTCATTTCTAGCATCCCCAATCACAGTCTAACCCTATT
TGACCGAGGATTTTATTCGCTCGGCCTGCTGCACGCTTGGCAGCAAGCACAACCTAATAGCCACTGGTTGTTGCCATTGAAGAAAGGCACTCAATATGAG
GTGGTTAGAACGCTGGGAAAACATGACCAGTGGGTGAAACTCACCACCACGCCTCAAGCAAGAAAGAAATGGCCGCAGCTCCCTGACACCCTTGAAGCGC
GCTTACTGACTAAGACGGTGAAAGGTAAGTCAGTCGCCATATTGACCTCGTTAACAGACCCAATGCGTTACCCAAGTGAAGACATCGTCGACTTATATGC
CCATCGTTGGGAAATCGAACTGGGCTACAGAGAGATGAAACAACATTTACTGGAGAGCCGTTTTACGCTCCGCAGCCAACTGCCTGAGCTGGTGTTCCAA
GAGCTATGGGGGGTGCTACTGGCCTACAATCTCATTAGATACAAGATGTTACTGATGGCCAAAAGCTTACCATCGGTTCATCCCAATCAACTGAGTTTTC
GTGATGCAGCGAGTCATATCATCTTCAAGTTGACACAGTTGTCATCACAAACGCCGGGAAATGTTCCCAGAGACGTATTGGATATAGAACGCAATGCACG
ACAATTTAAATTGGATGGTAAACGGGAAAGGGCTTATCCAAGGATCCTTAAAATGAGCAAAAATAAGTTTCCGGTTAGATCAAAGAAAAATGCCGTTCAC
TCTTAAGTGAACGGCATTA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1323 bp | 440 aa | 84 | 1406 | + | No |
Chemistry : DDE
ORF sequence :
MQLSEALARTHITRLTEFTCLADVLEPELIQSCLDSQGVATLRRRKLPMDAMIWAVIGMALFRGESVRSLINKLDIVLPQEIDYVARSAVTQARKRLGSE
VVREVFSRSANTWHARAEHPHWCGLNLYGVDGVVWRTPDSVQNQAAFGRTANASGEAAYPQIRMVCLMELSSHLLVNSAFDSVVENEMNLASQLISSIPN
HSLTLFDRGFYSLGLLHAWQQAQPNSHWLLPLKKGTQYEVVRTLGKHDQWVKLTTTPQARKKWPQLPDTLEARLLTKTVKGKSVAILTSLTDPMRYPSED
IVDLYAHRWEIELGYREMKQHLLESRFTLRSQLPELVFQELWGVLLAYNLIRYKMLLMAKSLPSVHPNQLSFRDAASHIIFKLTQLSSQTPGNVPRDVLD
IERNARQFKLDGKRERAYPRILKMSKNKFPVRSKKNAVHS
VVREVFSRSANTWHARAEHPHWCGLNLYGVDGVVWRTPDSVQNQAAFGRTANASGEAAYPQIRMVCLMELSSHLLVNSAFDSVVENEMNLASQLISSIPN
HSLTLFDRGFYSLGLLHAWQQAQPNSHWLLPLKKGTQYEVVRTLGKHDQWVKLTTTPQARKKWPQLPDTLEARLLTKTVKGKSVAILTSLTDPMRYPSED
IVDLYAHRWEIELGYREMKQHLLESRFTLRSQLPELVFQELWGVLLAYNLIRYKMLLMAKSLPSVHPNQLSFRDAASHIIFKLTQLSSQTPGNVPRDVLD
IERNARQFKLDGKRERAYPRILKMSKNKFPVRSKKNAVHS
Blast result :
Comments
ISSod7 is 70% aa similar to IS4.
There are 4 copies of ISSod7 in the chromosome and 0 copies in the plasmid of this strain.
There are 4 copies of ISSod7 in the chromosome and 0 copies in the plasmid of this strain.
References
1] DeBoy R. (2005) Direct submission.
2] Heidelberg,J., Paulsen,I., Nelson,K., Gaidos,E., Nelson,W., Read,T., Eisen,J., Seshadri,R., Ward,N., Methe,B., Clayton,R., Meyer,T., Tsapin,A., Scott,J., Beanan,M., Brinkac,L., Daugherty,S.,
DeBoy,R., Dodson,R., Durkin,A., Haft,D., Kolonay,J., Madupu,R., Peterson,J., Umayam,L., White,O., Wolf,A., Vamathevan,J., Weidman,J., Impraim,M., Lee,K., Berry,K., Lee,C., Mueller,J.,Khouri,H., Gill,J., Utterback,T., McDonald,L., Feldblyum,T., Smith,H., Venter,J., Nealson,K. and Fraser,C.
(2002) Nat. Biotechnol. 20 (11), 1118-1123
2] Heidelberg,J., Paulsen,I., Nelson,K., Gaidos,E., Nelson,W., Read,T., Eisen,J., Seshadri,R., Ward,N., Methe,B., Clayton,R., Meyer,T., Tsapin,A., Scott,J., Beanan,M., Brinkac,L., Daugherty,S.,
DeBoy,R., Dodson,R., Durkin,A., Haft,D., Kolonay,J., Madupu,R., Peterson,J., Umayam,L., White,O., Wolf,A., Vamathevan,J., Weidman,J., Impraim,M., Lee,K., Berry,K., Lee,C., Mueller,J.,Khouri,H., Gill,J., Utterback,T., McDonald,L., Feldblyum,T., Smith,H., Venter,J., Nealson,K. and Fraser,C.
(2002) Nat. Biotechnol. 20 (11), 1118-1123