ISSod6
- Family IS5
- Group IS427
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_004347 | ND | Shewanella oneidensis | Shewanella oneidensis MR-1 |
DNA section
IS Length : 883 bp
Ends
IR Length : 30/45
IRL : TAGGGTCTGTTGATCTTTCGAGAGTGATTTTTAGACAGCATGCCAAGACG
IRR : TAGGGTCTGTTGATCTTTGCTGTACAAATGTTCTTCAGCAATACATCGGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|
DNA sequence
TAGGGTCTGTTGATCTTTCGAGAGTGATTTTTAGACAGCATGCCAAGACGTTATAATTTGCTTCGCCAAAAGTAACCATAACCTCAAGCCATGCCAAGAC
TTATGCTAACCGATGCACGCTGGGAAAAGCTATTTCATTTAATGAAAAGCACAGGCCGTGTTTATGACAAACCTGAACATAGACAAACATTCGAAGGTAT
TCTTTACCGCCTTAGAACAGGTATCCCTTGGCGAGATTTACCTAAAGAGTTCGGTCATTGGAGCACGGTCTTTAGACGGTTTCATTTATGGTCTAAGAAA
GGCGTTCTAGCACATTTATTCAAGGCCTTAGCCAACCTTGCTGATATAGAATGGGTCTTTATTGATGGCTCGATAGTGCGAGCTCACCAGCACAGTGCAG
GTGCAGCGACGCTAAGTAATGAGAGTATTGGTAAAAGTCGAGGCGGTAATTCAACCAAAATTCACTTAGCCGTCGACAGCGGAGGATTACCGATTTATTT
CGAATTATCAGAAGGCCAAAAACACGATATTACACACGCCCCCAGCTTAATTGAGCACCTGAAGCAGGTTGATACCGTCATTGCAGATAAAGGTTATGAC
AGCGATGCTTTTCGTGAACTTATCGCCAATAAAGGCGGGAAATCTGTTATTCCAAGGCGCCGCTATAAGAATACACCTCAAGAAAGAGTCGATTGGTGCT
TATATCGGTATCGACATTTAGTGGAGAATGCTTTTGGAAGAATAAAACACTATCGAGCAATATCAACAAGATATGACAAGCTAGCAAGAAATTACGCCAG
TATGGTGTCACTGGCGTTTATGTTAATGTGGTTGCCGATGTATTGCTGAAGAACATTTGTACAGCAAAGATCAACAGACCCTA
TTATGCTAACCGATGCACGCTGGGAAAAGCTATTTCATTTAATGAAAAGCACAGGCCGTGTTTATGACAAACCTGAACATAGACAAACATTCGAAGGTAT
TCTTTACCGCCTTAGAACAGGTATCCCTTGGCGAGATTTACCTAAAGAGTTCGGTCATTGGAGCACGGTCTTTAGACGGTTTCATTTATGGTCTAAGAAA
GGCGTTCTAGCACATTTATTCAAGGCCTTAGCCAACCTTGCTGATATAGAATGGGTCTTTATTGATGGCTCGATAGTGCGAGCTCACCAGCACAGTGCAG
GTGCAGCGACGCTAAGTAATGAGAGTATTGGTAAAAGTCGAGGCGGTAATTCAACCAAAATTCACTTAGCCGTCGACAGCGGAGGATTACCGATTTATTT
CGAATTATCAGAAGGCCAAAAACACGATATTACACACGCCCCCAGCTTAATTGAGCACCTGAAGCAGGTTGATACCGTCATTGCAGATAAAGGTTATGAC
AGCGATGCTTTTCGTGAACTTATCGCCAATAAAGGCGGGAAATCTGTTATTCCAAGGCGCCGCTATAAGAATACACCTCAAGAAAGAGTCGATTGGTGCT
TATATCGGTATCGACATTTAGTGGAGAATGCTTTTGGAAGAATAAAACACTATCGAGCAATATCAACAAGATATGACAAGCTAGCAAGAAATTACGCCAG
TATGGTGTCACTGGCGTTTATGTTAATGTGGTTGCCGATGTATTGCTGAAGAACATTTGTACAGCAAAGATCAACAGACCCTA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 759 bp | 252 aa | 91 | 849 | + | No |
Chemistry : DDE
ORF sequence :
MPRLMLTDARWEKLFHLMKSTGRVYDKPEHRQTFEGILYRLRTGIPWRDLPKEFGHWSTVFRRFHLWSKKGVLAHLFKALANLADIEWVFIDGSIVRAHQ
HSAGAATLSNESIGKSRGGNSTKIHLAVDSGGLPIYFELSEGQKHDITHAPSLIEHLKQVDTVIADKGYDSDAFRELIANKGGKSVIPRRRYKNTPQERV
DWCLYRYRHLVENAFGRIKHYRAISTRYDKLARNYASMVSLAFMLMWLPMYC
HSAGAATLSNESIGKSRGGNSTKIHLAVDSGGLPIYFELSEGQKHDITHAPSLIEHLKQVDTVIADKGYDSDAFRELIANKGGKSVIPRRRYKNTPQERV
DWCLYRYRHLVENAFGRIKHYRAISTRYDKLARNYASMVSLAFMLMWLPMYC
Blast result :
Comments
ISSod6 is 71% aa similar to ISAac2.
There are 6 copies of ISSod6 in the chromosome and 4 copies in the plasmid of this strain.
There are 6 copies of ISSod6 in the chromosome and 4 copies in the plasmid of this strain.
References
1] DeBoy R. (2005) Direct submission.
2] Heidelberg,J., Paulsen,I., Nelson,K., Gaidos,E., Nelson,W., Read,T., Eisen,J., Seshadri,R., Ward,N., Methe,B., Clayton,R., Meyer,T., Tsapin,A., Scott,J., Beanan,M., Brinkac,L., Daugherty,S.,
DeBoy,R., Dodson,R., Durkin,A., Haft,D., Kolonay,J., Madupu,R., Peterson,J., Umayam,L., White,O., Wolf,A., Vamathevan,J., Weidman,J., Impraim,M., Lee,K., Berry,K., Lee,C., Mueller,J.,Khouri,H., Gill,J., Utterback,T., McDonald,L., Feldblyum,T., Smith,H., Venter,J., Nealson,K. and Fraser,C.
(2002) Nat. Biotechnol. 20 (11), 1118-1123
2] Heidelberg,J., Paulsen,I., Nelson,K., Gaidos,E., Nelson,W., Read,T., Eisen,J., Seshadri,R., Ward,N., Methe,B., Clayton,R., Meyer,T., Tsapin,A., Scott,J., Beanan,M., Brinkac,L., Daugherty,S.,
DeBoy,R., Dodson,R., Durkin,A., Haft,D., Kolonay,J., Madupu,R., Peterson,J., Umayam,L., White,O., Wolf,A., Vamathevan,J., Weidman,J., Impraim,M., Lee,K., Berry,K., Lee,C., Mueller,J.,Khouri,H., Gill,J., Utterback,T., McDonald,L., Feldblyum,T., Smith,H., Venter,J., Nealson,K. and Fraser,C.
(2002) Nat. Biotechnol. 20 (11), 1118-1123