ISSod4
- Family IS256
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_004347 | ND | Shewanella oneidensis | Shewanella oneidensis MR-1 |
DNA section
IS Length : 1293 bp
Ends
IR Length : 19/24
IRL : GGTAGTGTTCATAATTCTGTGTCATTTCAGTAAAATATTCAAAAACAGGA
IRR : GAGGGCGTTCAAAATTCTGTGTCAGGCTAATTTTTAAATTTCTAGCACGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|
DNA sequence
GGTAGTGTTCATAATTCTGTGTCATTTCAGTAAAATATTCAAAAACAGGAATGACACATGACCCAACCTTTTAACTTCGAACAAGCCCTTAAAGATCTGC
AATCAGGTAAAAGCCTCACAGGTAAAGACAGCATTCTTGGCCCACTGATCAAGCAACTCACTGAAGCGGCTCTCCAGGCTGAGCTTGAGCAGCATTTAGC
GCATGATCCTCAGCCTAATCGTAAAAATGGCAAAACCCCTAAGACCATTAAGCATCCGTCCGGTAACTTTGAGTTAGACGCGCCTAGAGACCGCAATGGC
ACCTTTGAGCCTCAGTTGATTAAGAAAAATCAAACTACACTAACCGATGAAATCGAACGTAAAGTGTTATCGATGTTCAGTATAGGTATGAGCTATCGCG
ATATTAATCAACATGTTGAAGATATGTATGGGCTCAATGTGTCTAACGCAACAGTAAGCGCCATCACCGACAAACTCATCCCCGAACTTAAAGCGTGGCA
ACAGCGCCCATTAGATAGCCATTATCCTATCGTTTGGCTTGATGCGATACATTATAAAGTCAAAGAGGATGGGCGTTACGTCAGTAAAGCCGTTTACACA
TTGTTAGCGCTTAATATGAAAGGAAAAAAGGAAATTTTAGGGCTTCACTTATCCGAAAATGAAGGCGCTAATTACTGGCTATCCGTACTGGCCGATCTTA
ATAATCGTGGTGTAAAAGATATTCTTATCGCCTGTGTTGACGGCTTGACCGGTTTCCCTGAGGCCATAGCCAGTATCTTCCCTCATACGGAAACACAGCT
ATGCGTTATCCACCAGATCCGCAACTCAATGAAGTATGTCGCCTCAAAAAATCAGAAAGCGTTTATGGCTGATTTAAAGCCTGTGTATCGAGCCGTGAGT
AAAGAAGCCGCAGAGATGGCATTGGACGAACTGGAGGCCAAATGGGGTGATGCTTATCCGTTGGTAATCAACTCTTGGCGTCGCAAATGGCATAATTTGT
CCCATTATTTTAAGTACCCAGAACATATCAGGAAAGTGATTTACACGACCAATGCGGTTGAGGCTGTGCATCGCCAATTTAGAAAGCTCACCAAAACCAA
AGGTGCATTTCCTAATGAAAATAGCTTGTTGAAGCTACTTTACGCAGGCATATTAAACGCCTCAGATAAATGGACTATGCCAATCCACAATTGGAGCCTT
TGTTTATCTCAGTTAGCGATTTATTTTGAAGGACGTTTAGATAGCGTGCTAGAAATTTAAAAATTAGCCTGACACAGAATTTTGAACGCCCTC
AATCAGGTAAAAGCCTCACAGGTAAAGACAGCATTCTTGGCCCACTGATCAAGCAACTCACTGAAGCGGCTCTCCAGGCTGAGCTTGAGCAGCATTTAGC
GCATGATCCTCAGCCTAATCGTAAAAATGGCAAAACCCCTAAGACCATTAAGCATCCGTCCGGTAACTTTGAGTTAGACGCGCCTAGAGACCGCAATGGC
ACCTTTGAGCCTCAGTTGATTAAGAAAAATCAAACTACACTAACCGATGAAATCGAACGTAAAGTGTTATCGATGTTCAGTATAGGTATGAGCTATCGCG
ATATTAATCAACATGTTGAAGATATGTATGGGCTCAATGTGTCTAACGCAACAGTAAGCGCCATCACCGACAAACTCATCCCCGAACTTAAAGCGTGGCA
ACAGCGCCCATTAGATAGCCATTATCCTATCGTTTGGCTTGATGCGATACATTATAAAGTCAAAGAGGATGGGCGTTACGTCAGTAAAGCCGTTTACACA
TTGTTAGCGCTTAATATGAAAGGAAAAAAGGAAATTTTAGGGCTTCACTTATCCGAAAATGAAGGCGCTAATTACTGGCTATCCGTACTGGCCGATCTTA
ATAATCGTGGTGTAAAAGATATTCTTATCGCCTGTGTTGACGGCTTGACCGGTTTCCCTGAGGCCATAGCCAGTATCTTCCCTCATACGGAAACACAGCT
ATGCGTTATCCACCAGATCCGCAACTCAATGAAGTATGTCGCCTCAAAAAATCAGAAAGCGTTTATGGCTGATTTAAAGCCTGTGTATCGAGCCGTGAGT
AAAGAAGCCGCAGAGATGGCATTGGACGAACTGGAGGCCAAATGGGGTGATGCTTATCCGTTGGTAATCAACTCTTGGCGTCGCAAATGGCATAATTTGT
CCCATTATTTTAAGTACCCAGAACATATCAGGAAAGTGATTTACACGACCAATGCGGTTGAGGCTGTGCATCGCCAATTTAGAAAGCTCACCAAAACCAA
AGGTGCATTTCCTAATGAAAATAGCTTGTTGAAGCTACTTTACGCAGGCATATTAAACGCCTCAGATAAATGGACTATGCCAATCCACAATTGGAGCCTT
TGTTTATCTCAGTTAGCGATTTATTTTGAAGGACGTTTAGATAGCGTGCTAGAAATTTAAAAATTAGCCTGACACAGAATTTTGAACGCCCTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1203 bp | 400 aa | 58 | 1260 | + | No |
Chemistry : DDE
ORF sequence :
MTQPFNFEQALKDLQSGKSLTGKDSILGPLIKQLTEAALQAELEQHLAHDPQPNRKNGKTPKTIKHPSGNFELDAPRDRNGTFEPQLIKKNQTTLTDEIE
RKVLSMFSIGMSYRDINQHVEDMYGLNVSNATVSAITDKLIPELKAWQQRPLDSHYPIVWLDAIHYKVKEDGRYVSKAVYTLLALNMKGKKEILGLHLSE
NEGANYWLSVLTDLNNRGVKDILIACVDGLTGFPEAIASIFPHTETQLCVIHQIRNSMKYVASKNQKAFMADLKPVYRAVSKEAAEMALDELEAKWGDAY
PLVINSWRRKWHNLSHYFKYPEHIRKVIYTTNAVEAVHRQFRKLTKTKGAFPNENSLLKLLYAGILNASDKWTMPIHNWSLCLSQLAIYFEGRLDSVLEI
RKVLSMFSIGMSYRDINQHVEDMYGLNVSNATVSAITDKLIPELKAWQQRPLDSHYPIVWLDAIHYKVKEDGRYVSKAVYTLLALNMKGKKEILGLHLSE
NEGANYWLSVLTDLNNRGVKDILIACVDGLTGFPEAIASIFPHTETQLCVIHQIRNSMKYVASKNQKAFMADLKPVYRAVSKEAAEMALDELEAKWGDAY
PLVINSWRRKWHNLSHYFKYPEHIRKVIYTTNAVEAVHRQFRKLTKTKGAFPNENSLLKLLYAGILNASDKWTMPIHNWSLCLSQLAIYFEGRLDSVLEI
Blast result :
Comments
ISSod4 is 68% aa similar to IS1414.
There are 45 copies of ISSod4 in the chromosome and 6 copies in the plasmid of this strain.
There are 45 copies of ISSod4 in the chromosome and 6 copies in the plasmid of this strain.
References
1] DeBoy R. (2005) Direct submission
2] Heidelberg,J., Paulsen,I., Nelson,K., Gaidos,E., Nelson,W., Read,T., Eisen,J., Seshadri,R., Ward,N., Methe,B., Clayton,R., Meyer,T., Tsapin,A., Scott,J., Beanan,M., Brinkac,L., Daugherty,S.,
DeBoy,R., Dodson,R., Durkin,A., Haft,D., Kolonay,J., Madupu,R., Peterson,J., Umayam,L., White,O., Wolf,A., Vamathevan,J., Weidman,J., Impraim,M., Lee,K., Berry,K., Lee,C., Mueller,J.,Khouri,H., Gill,J., Utterback,T., McDonald,L., Feldblyum,T., Smith,H., Venter,J., Nealson,K. and Fraser,C.
(2002) Nat. Biotechnol. 20 (11), 1118-1123
2] Heidelberg,J., Paulsen,I., Nelson,K., Gaidos,E., Nelson,W., Read,T., Eisen,J., Seshadri,R., Ward,N., Methe,B., Clayton,R., Meyer,T., Tsapin,A., Scott,J., Beanan,M., Brinkac,L., Daugherty,S.,
DeBoy,R., Dodson,R., Durkin,A., Haft,D., Kolonay,J., Madupu,R., Peterson,J., Umayam,L., White,O., Wolf,A., Vamathevan,J., Weidman,J., Impraim,M., Lee,K., Berry,K., Lee,C., Mueller,J.,Khouri,H., Gill,J., Utterback,T., McDonald,L., Feldblyum,T., Smith,H., Venter,J., Nealson,K. and Fraser,C.
(2002) Nat. Biotechnol. 20 (11), 1118-1123