ISGka2

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_006510 ND Geobacillus kaustophilus
Geobacillus kaustophilus
DNA section
IS Length : 1561 bp

Ends


Left end : TTTTTCCGTGAAAATCCCCACCACTTGGTGAGTGCGGTATACGCTCCTGATCCGTGAGGGTATACTGAAAATGGCCAAAAAAGGCAATAGGAAAGCAGAG
Right end : AACGTCCTGTTGAACTGTTTGCGCCTATTCTTCATTATGGGAAGAAAAGGGGGATTTTCATCCCTGGGTGGAGGGCAAACCATTGCCCATGGATCTTTTC

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

TTTTTCCGTGAAAATCCCCACCACTTGGTGAGTGCGGTATACGCTCCTGATCCGTGAGGGTATACTGAAAATGGCCAAAAAAGGCAATAGGAAAGCAGAG
GTGCCCGATTTTAGGCATCTCGTATAACCTGTCTGCCTTTTGGCTAGACTAAATAAGTTGTGGTTGGCGGAACGGCTCTTTGCGGGAGATCATGCAAAAG
ATGATCACCAACATCCGCCGAGCAATGGCGATGAGGGCTTTTTTCTTCCCGCACCGGGCCGCCAACGACCAAAACTTTCGGGACAAGGGATGCGTCTTGG
ATCGAGCTGCTGACCATGCCGCCTCGCATAACGCCGATCGGAGATGGGGATTGCCTTTTGTCGTGCGCGTGCTCTTTCGCTTTCCGGCGCTTTCATGGTT
GCCGGGGGACAATCCAGTCCATGAAGCCGCCCGTTCCGGCGTTTCAAAGACGCTCATGTCGGTTCCCATCTCGGCTATGATGACGGCGGCGGTTTGTTTT
TTCACTCCGGGCATGGTCATCAGCAGGTTCACTTCCTCGCGATACGGCTCGAGCAGGCGGTCGATGTGCTGGTCGACTTCTTCGATGAGCCGCTCCAATT
CCTCAACGTGTTTCCACAAGAGGCGAAGGAGACGGAGCTCGTGTTCGGTCAAGGTGCCGAGCAGCGAATCGTACACCGCCTGCTTTTTCTTTTTGAGCCT
TCCGCGCAGGCATTGATCCAACTCGTCCTTGTCCACGTATCCCTTCTCAAGCAGCCGGGCGAGGATGTCTTTTCCGGAAACGCCGAAGAGATCGGAGAGG
ACCGAGCCGAGTTTGACATTGGAAGACTCGAGCACTTTTTGAATCCGGTTTTTCTCCGAAGTCAGCTGTCCGACCCACTTTTTGCGGAGGCGGGTAAAAT
CCCGCAATTCGCGAATATCCGCTGGGGGGACGAAACTTTTTTCAACGAGTCCATGGCGGAGCAGCTTGGCGATCCACTCGGCGTCAGAGACATCGGTTTT
TCTTCCCGGGACATTTTTGATCCGCTGCGGATTGGCCAGTGTCAAGTCGACATAGCCCTCGAGGAAGGCGAAGACCGGTTTCCAATACACGCCGGTGGAT
TCCATGGCGACATGGGTAACGCCATGTTCTTCGAGCCACTCAAGCAGGTCGCCAAGTCCCTTCGAGAACGTGGAGAAGGTTTGAATGTCCTTTTGAATGT
GTCCATCTTCTTCCCATAGCGCGCAGGCGACGATGGTTTCGGCATGAACATCCAATCCTGCGCAGCGAGGATAGATGACATCCATGATGAAAATCCTCCT
TTTCGATGATCGAGTGCGCAAACAGCGAATCCACGGGAGAAATGCGGCAGTTTTCCGTTCGTCGTCACCTTTCCTCCGCATCGGGAAAGGGCGGACAATG
GGTGGTGCACCCAGTGGATTCAAACACTTTTCCGTACAGGGTCTAAGCCACCATTAAGCATAACGTCCTGTTGAACTGTTTGCGCCTATTCTTCATTATG
GGAAGAAAAGGGGGATTTTCATCCCTGGGTGGAGGGCAAACCATTGCCCATGGATCTTTTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1134 bp378 aa2771410+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MDVIYPRCAGLDVHAETIVACALWEEDGHIQKDIQTFSTFSKGLGDLLEWLEEHGVTHVAMESTGVYWKPVFAFLEGYVDLTLANPQRIKNVPGRKTDVS
DAEWIAKLLRHGLVEKSFVPPADIRELRDFTRLRKKWVGQLTSEKNRIQKVLESSNVKLGSVLSDLFGVSGKDILARLLEKGYVDKDELDQCLRGRLKKK
KQAVYDSLLGTLTEHELRLLRLLWKHVEELERLIEEVDQHIDRLLEPYREEVNLLMTMPGVKKQTAAVIIAEMGTDMSVFETPERAASWTGLSPGNHESA
GKRKSTRTTKGNPHLRSALCEAAWSAARSKTHPLSRKFWSLAARCGKKKALIAIARRMLVIIFCMISRKEPFRQPQLI

 

Blast result :
Comments
ISGka2 is 50% aa similar to ISMma5
References
1] Takami,H., Takaki,Y., Chee,G.J., Nishi,S., Shimamura,S., Suzuki,H.,
Matsui,S. and Uchiyama,I. (2004) Nucleic Acids Res. 32 (21), 6292-6303