ISFac2

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AABC04000014 ND Ferroplasma acidarmanus
Ferroplasma acidarmanus
DNA section
IS Length : 1040 bp

Ends


IR Length : 19/20

IRL : GTAGTGTGTTGCATAATTCATTCTAATTTAATAATTATTCCATAATAAAT
IRR : GTAGTGTGTTGCATAATTAATAGGCATGTGTCATCCCCCTCATAATATTG

Insertion site


Left flankDirect repeatRight flankDR Length
ATAATCATACGAAAAATAGAATATTCA7

DNA sequence

GTAGTGTGTTGCATAATTCATTCTAATTTAATAATTATTCCATAATAAATTTAAAACTTAAAAGGTAAACCCCTATATAGTGAAATATAGGGGCGATTTG
CTTTGACACCACAAATCAATAATAAAATAAATAGAAGTATAAAAAGATACTGGATTGGTTCCAACAGAAGATGGGAAAAGTATAATGAATCACTTGTAGA
CAGGGTGGAATACCTTACAGATCTGTCATTTATAAAGGATTATGATACTCTATTAGAGGAAAAGAATAGTGGAAAAATAGGCCATCCATACAAAGTACCC
GATGCATTGATAATGTATTTAGCGAGATTAAGATCTATATTTAATGTACCGTTCAGGTCACTTGAAGGGATATTGAGATCCTTAGCGATTATAACAGGAA
TAAAATCAATATCATACAGTGAAATATTCAGGAGGATAAGGAGAATTAAGCCTGAATTGAATAATATTAACAATAAACTGGATTGCATTATAGATTCTAC
TGGATATAAAATAACAATAAGGGGAGATTACTTAGGCCATAAATGGCATAAGAAAAGGAAGGGGTGGCTCAAATTACATGTAATAATATCATTGAAGGAT
GTTAATGTATTATCATTCACTATAACAGATGAGCATACACATGATTCTAAAGCTGCTAGAAAACTATTGAGTAAAATGAAAAATAATATTCTAAGAATAT
TTGGGGATAGGGGATATGATTCAAAATATATCTACAATATGTTCGGATATAATGCAGTAATACCCCCCAGGAAAAATGCCTCTACTAAATCCAGAGGTTC
ATCCACAAGGGCCAAGATTGTAAGATTTATAAAAAAGAATTCCATGGAACAGTGGAAGGAGAATAATAGCTATGGTAAAAGGTGGATTGTAGAAATATAT
TTTTCAGGATTAAAAAGAGTAATGACAGAGGTTATTAAAGCTAAGAAAATAGAGTATATTATACAGGAATTAGCTCTTAAGGTTGTTAATTACAATATTA
TGAGGGGGATGACACATGCCTATTAATTATGCAACACACTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
921 bp307 aa1031023+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTPQINNKINRSIKRYWIGSNRRWEKYNESLVDRVEYLTDLSFIKDYDTLLEEKNSGKIGHPYKVPDALIMYLARLRSIFNVPFRSLEGILRSLAIITGI
KSISYSEIFRRIRRIKPELNNINNKLDCIIDSTGYKITIRGDYLGHKWHKKRKGWLKLHVIISLKDVNVLSFTITDEHTHDSKAARKLLSKMKNNILRIF
GDRGYDSKYIYNMFGYNAVIPPRKNASTKSRGSSTRAKIVRFIKKNSMEQWKENNSYGKRWIVEIYFSGLKRVMTEVIKAKKIEYIIQELALKVVNYNIM
RGMTHAY

 

Blast result :
Comments
ISFac2 is 52% aa similar ISC1058.
References
[1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T.,
Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2005) Direct submission to Genbank