ISPsy17
- Family IS256
- Group
Isoform Synonym(s) ISPsy18
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_005773 | ND | Pseudomonas syringae | Pseudomonas syringae pv. phaseolicola |
DNA section
IS Length : 1374 bp
Ends
IR Length : 22/28
IRL : GAGACTGTCAGAAATTTTGTGTTCGGGCATAACATGTAGCTAGAGGTGCA
IRR : GGGAGTATCAGTTTTTTTGTGTTCGGGCTGGTTAGGGCCTGCCGTCAGGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGTCACCGCC | AGTAGG | CAACCCATGG | 6 |
DNA sequence
GAGACTGTCAGAAATTTTGTGTTCGGGCATAACATGTAGCTAGAGGTGCATGTATGCCGACCAAAAAGAAGTCCGCCAATGCAACAGCGAGGGAGTTGCC
CTCGATTCCCCAAGAGCTGATCGAGCAGTTTGTTAAAGGCCCGATGAGCGCCGAAGCCATTCAAGACGCGTCCATGGCGTTCAAGAAGGCTCTGATCGAG
CGTGCGCTAGGCGCCGAGCTGGGTCACCACCTTGGTTATCCTCAGGGCGCGGAGCGCCCTGAGGAGTCGACCAATCAGCGCAATGGCAAAAGCAGCAAGA
CGGTTCTGACCGACGACGGGCCGCTTCGCCTGGATATCCCCAGAGACCGCGATGGTAGCTTCGCCCCGATCCTGATTCCCAAGCACGAACGACGTTTTAC
AGGCTTCGACGACAAGATAATTGCCATGTACGCCCGGGGCATGACGGTGCGTGAGATCCGCGCTTTTCTATCTGAGCAGTATGGAACTGACGTGTCCCAT
GACTTCATCAGCTCAGTCACCGATGCGGTCATGGAAGAGGTGGGCGCTTGGCAGCAACGACCCTTGGAACCGATGTATCCGGTGATCTTCTTCGATGCGT
TACGGGTCAAAATCCGGGACGAGGGGTTAGTGTGCAACAAGGCTATTTATCTGGCGCTGGGGGTATTACCTGATGGCACGCGCGACATTCTGGGTATATG
GATCGAGAGCACCGAGGGTGCCAAGTTTTGGATGAAGGTGTTCAACGACCTCAAGACTCGTGGCGTTGAAGATGTTCTGATCGCCGTCACGGATGGCCTC
AAAGGAATACCGGAGGCGTTGGGGGCGGTTTTTCCTGCCACGACGCTGCAAACCTGCATCGTGCATCTGATCCGCAACAGCTTGGACTATGCCGCTTGGG
ATAAACGTCGGGCACTGGCCAAAGCACTCAAGCCGATCTACCAGGCGATCAATGCCGATGTGGCTGAGCAAGAGCTTAACGCCTTTGAAGCGGGCCCCTG
GGGCAAGCAGTATCCGACTGTAGTTGCTGCATGGCGTCGCGCCTGGGATCGGGTTATACCGTTTTTTGTTTTTCCGGCGGGCATTCGCAAAGTGGTTTAC
ACGACCAATGCCATCGAGAGCATCAATGCCCAGTTACGCAAGATCATCAAGACTCGAGGGCACTTCCCGACCGATGAGGCTGCGACGAAACTGATATGGC
TTGGGTTGCGCAACATCACCGCCAACTGGGGTCATGCGGCACACGACTGGAAAGTGGCAATGAATCAATTTGCGATCCTGTACGGAGACCGATTTACCAG
ACCGAGCTGGTAAAACAAGGGCCTGCCTGACGGCAGGCCCTAACCAGCCCGAACACAAAAAAACTGATACTCCC
CTCGATTCCCCAAGAGCTGATCGAGCAGTTTGTTAAAGGCCCGATGAGCGCCGAAGCCATTCAAGACGCGTCCATGGCGTTCAAGAAGGCTCTGATCGAG
CGTGCGCTAGGCGCCGAGCTGGGTCACCACCTTGGTTATCCTCAGGGCGCGGAGCGCCCTGAGGAGTCGACCAATCAGCGCAATGGCAAAAGCAGCAAGA
CGGTTCTGACCGACGACGGGCCGCTTCGCCTGGATATCCCCAGAGACCGCGATGGTAGCTTCGCCCCGATCCTGATTCCCAAGCACGAACGACGTTTTAC
AGGCTTCGACGACAAGATAATTGCCATGTACGCCCGGGGCATGACGGTGCGTGAGATCCGCGCTTTTCTATCTGAGCAGTATGGAACTGACGTGTCCCAT
GACTTCATCAGCTCAGTCACCGATGCGGTCATGGAAGAGGTGGGCGCTTGGCAGCAACGACCCTTGGAACCGATGTATCCGGTGATCTTCTTCGATGCGT
TACGGGTCAAAATCCGGGACGAGGGGTTAGTGTGCAACAAGGCTATTTATCTGGCGCTGGGGGTATTACCTGATGGCACGCGCGACATTCTGGGTATATG
GATCGAGAGCACCGAGGGTGCCAAGTTTTGGATGAAGGTGTTCAACGACCTCAAGACTCGTGGCGTTGAAGATGTTCTGATCGCCGTCACGGATGGCCTC
AAAGGAATACCGGAGGCGTTGGGGGCGGTTTTTCCTGCCACGACGCTGCAAACCTGCATCGTGCATCTGATCCGCAACAGCTTGGACTATGCCGCTTGGG
ATAAACGTCGGGCACTGGCCAAAGCACTCAAGCCGATCTACCAGGCGATCAATGCCGATGTGGCTGAGCAAGAGCTTAACGCCTTTGAAGCGGGCCCCTG
GGGCAAGCAGTATCCGACTGTAGTTGCTGCATGGCGTCGCGCCTGGGATCGGGTTATACCGTTTTTTGTTTTTCCGGCGGGCATTCGCAAAGTGGTTTAC
ACGACCAATGCCATCGAGAGCATCAATGCCCAGTTACGCAAGATCATCAAGACTCGAGGGCACTTCCCGACCGATGAGGCTGCGACGAAACTGATATGGC
TTGGGTTGCGCAACATCACCGCCAACTGGGGTCATGCGGCACACGACTGGAAAGTGGCAATGAATCAATTTGCGATCCTGTACGGAGACCGATTTACCAG
ACCGAGCTGGTAAAACAAGGGCCTGCCTGACGGCAGGCCCTAACCAGCCCGAACACAAAAAAACTGATACTCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1260 bp | 419 aa | 53 | 1312 | + | No |
Chemistry : DDE
ORF sequence :
MPTKKKSANATARELPSIPQELIEQFVKGPMSAEAIQDASMAFKKALIERALGAELGHHLGYPQGAERPEESTNQRNGKSSKTVLTDDGPLRLDIPRDRD
GSFAPILIPKHERRFTGFDDKIIAMYARGMTVREIRAFLSEQYGTDVSHDFISSVTDAVMEEVGAWQQRPLEPMYPVIFFDALRVKIRDEGLVCNKAIYL
ALGVLPDGTRDILGIWIESTEGAKFWMKVFNDLKTRGVEDVLIAVTDGLKGIPEALGAVFPATTLQTCIVHLIRNSLDYAAWDKRRALAKALKPIYQAIN
ADVAEQELNAFEAGPWGKQYPTVVAAWRRAWDRVIPFFVFPAGIRKVVYTTNAIESINAQLRKIIKTRGHFPTDEAATKLIWLGLRNITANWGHAAHDWK
VAMNQFAILYGDRFTRPSW
GSFAPILIPKHERRFTGFDDKIIAMYARGMTVREIRAFLSEQYGTDVSHDFISSVTDAVMEEVGAWQQRPLEPMYPVIFFDALRVKIRDEGLVCNKAIYL
ALGVLPDGTRDILGIWIESTEGAKFWMKVFNDLKTRGVEDVLIAVTDGLKGIPEALGAVFPATTLQTCIVHLIRNSLDYAAWDKRRALAKALKPIYQAIN
ADVAEQELNAFEAGPWGKQYPTVVAAWRRAWDRVIPFFVFPAGIRKVVYTTNAIESINAQLRKIIKTRGHFPTDEAATKLIWLGLRNITANWGHAAHDWK
VAMNQFAILYGDRFTRPSW
Blast result :
Comments
Originally named ISPsy17, although in the paper reporting the genome sequence of strain 1448A is referred to as ISPsy18. There are 48 intact copies of the element in the 1448A genome, of which only 24 show a perfect 6 to 8 nt direct repeat; all the repeats are different.
ISPsy17 is 85% aa similar to ISRso7.
ISPsy17 is 85% aa similar to ISRso7.
References
[1] Rivas, L.A., Mansfield, J., Tsiamis, G., Jackson, R.W. and Murillo, J. (2005) Appl. Environ. Microbiol., 71, 3778-3785.
[2] Joardar, V., Lindeberg, M., Jackson, R. W., Selengut, J., Dodson, R., Brinkac, L. M., Daugherty, S. C., DeBoy, R., Durkin, A. S., Giglio, M. G., Madupu, R., Nelson, W. C., Rosovitz, M. J., Sullivan, S., Crabtree, J., Creasy, T., Davidsen, T., Haft, D. H., Zafar, N., Zhou, L. W., Halpin, R., Holley, T., Khouri, H., Feldblyum, T., White, O., Fraser, C. M., Chatterjee, A. K., Cartinhour, S., Schneider, D. J., Mansfield, J., Collmer, A., and Buell, C. R. (2005) J. Bacteriol. 187, 6488-98.
[2] Joardar, V., Lindeberg, M., Jackson, R. W., Selengut, J., Dodson, R., Brinkac, L. M., Daugherty, S. C., DeBoy, R., Durkin, A. S., Giglio, M. G., Madupu, R., Nelson, W. C., Rosovitz, M. J., Sullivan, S., Crabtree, J., Creasy, T., Davidsen, T., Haft, D. H., Zafar, N., Zhou, L. W., Halpin, R., Holley, T., Khouri, H., Feldblyum, T., White, O., Fraser, C. M., Chatterjee, A. K., Cartinhour, S., Schneider, D. J., Mansfield, J., Collmer, A., and Buell, C. R. (2005) J. Bacteriol. 187, 6488-98.