ISRtr4

  • Family IS5
  • Group IS1031
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY753544 ND Rhizobium tropici
Rhizobium tropici CFN299
DNA section
IS Length : 932 bp

Ends


IR Length : 10/15

IRL : GGCTGCCTCAAAAAGAGGTGGGTGATTTCAACAGGTTATGATTCCTTCGG
IRR : AGTCGGATTCGAAAAGCGTTCAACGATATCCATACCTTGCTAGCCGTCTG

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GGCTGCCTCAAAAAGAGGTGGGTGATTTCAACAGGTTATGATTCCTTCGGATTTGCGAGATTCGATGGAGAACACGATGGCCTGGACCAAAATCACCCGT
CGGCAATATGCCCGGCGAACGGCACGCTACGCAAGCGATATGACGGATCGGGAATGGGGTCTGGTTCAGCCTTTCCTGCCAATGCCGCGCCGCTTGGGCC
GCCCGCGGACCACGGATTTGCGAGAGGTGGTGAATGCCCTGCTTTACATCGCCACAACTGGTTGCCAATGGCGGATGCTGCCGAAGGATTTTCCACCCTG
CTCGACCGTCCAGCGCTATTTCTATGAATGGAGAGCGTTGGGACTTTGGCCACGCATCAACCATCGTCTCGTGATGGAAACGCGCGAGTTGGAGGGCAAG
GAGGCAAGCCCGACGGCCGGTGTGATCGATAGCCAGAGCGTCAAAACCACCGAAAGCGGCGGCATCCGGGGCTATGACGCGGGCAAGAAGACCAAAGGCC
GCAAGCGCCATATCATCATCGTCGATACGCTCGGCCTGATGGTCGGTCTCATGGTGCACAGCGCCGACATCCAGGATCGCGACGGTGCTCCCGATCTCCT
GAAATCCATCCGCCACAGGTGGCCATGGTTACTGCATGTCTTCGCCGATGGTGGCTATGCGGGCGATAAGTTGAAGCGGCGACTGAAAAAGATCGGGCGC
TGGACGATCGAGATCATCAAGCGCTCAGACAAGGCGAAAGGCTTCGAGGTTCTGCCGCGTCGATGGGTGGTCGAACGGACCTTCGCCTGGCTTGGCAGAT
GCCGCAGATTGGCCAAAGACGTCGAACGCTCCATCGCATCAGCCGAAGCGTGGATCATGATCGCCCACATTCGTCTCATCACCAGACGGCTAGCAAGGTA
TGGATATCGTTGAACGCTTTTCGAATCCGACT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
876 bp291 aa20895+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MIPSDLRDSMENTMAWTKITRRQYARRTARYASDMTDREWGLVQPFLPMPRRLGRPRTTDLREVVNALLYIATTGCQWRMLPKDFPPCSTVQRYFYEWRA
LGLWPRINHRLVMETRELEGKEASPTAGVIDSQSVKTTESGGIRGYDAGKKTKGRKRHIIIVDTLGLMVGLMVHSADIQDRDGAPDLLKSIRHRWPWLLH
VFADGGYAGDKLKRRLKKIGRWTIEIIKRSDKAKGFEVLPRRWVVERTFAWLGRCRRLAKDVERSIASAEAWIMIAHIRLITRRLARYGYR

 

Blast result :
Comments
ISRtr4 is 90% aa similar to ISRm4.
References
1] Hernandez-Lucas,I., Xianwu,G., Gaytan,M.A., Ramirez-Trujillo,A., Perez-Rueda,E., Flores,M., Broughton,W., Martinez-Romero,E. and Mavingui,P. (2006) Unpublished results