ISRtr4
- Family IS5
- Group IS1031
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY753544 | ND | Rhizobium tropici | Rhizobium tropici CFN299 |
DNA section
IS Length : 932 bp
Ends
IR Length : 10/15
IRL : GGCTGCCTCAAAAAGAGGTGGGTGATTTCAACAGGTTATGATTCCTTCGG
IRR : AGTCGGATTCGAAAAGCGTTCAACGATATCCATACCTTGCTAGCCGTCTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGCTGCCTCAAAAAGAGGTGGGTGATTTCAACAGGTTATGATTCCTTCGGATTTGCGAGATTCGATGGAGAACACGATGGCCTGGACCAAAATCACCCGT
CGGCAATATGCCCGGCGAACGGCACGCTACGCAAGCGATATGACGGATCGGGAATGGGGTCTGGTTCAGCCTTTCCTGCCAATGCCGCGCCGCTTGGGCC
GCCCGCGGACCACGGATTTGCGAGAGGTGGTGAATGCCCTGCTTTACATCGCCACAACTGGTTGCCAATGGCGGATGCTGCCGAAGGATTTTCCACCCTG
CTCGACCGTCCAGCGCTATTTCTATGAATGGAGAGCGTTGGGACTTTGGCCACGCATCAACCATCGTCTCGTGATGGAAACGCGCGAGTTGGAGGGCAAG
GAGGCAAGCCCGACGGCCGGTGTGATCGATAGCCAGAGCGTCAAAACCACCGAAAGCGGCGGCATCCGGGGCTATGACGCGGGCAAGAAGACCAAAGGCC
GCAAGCGCCATATCATCATCGTCGATACGCTCGGCCTGATGGTCGGTCTCATGGTGCACAGCGCCGACATCCAGGATCGCGACGGTGCTCCCGATCTCCT
GAAATCCATCCGCCACAGGTGGCCATGGTTACTGCATGTCTTCGCCGATGGTGGCTATGCGGGCGATAAGTTGAAGCGGCGACTGAAAAAGATCGGGCGC
TGGACGATCGAGATCATCAAGCGCTCAGACAAGGCGAAAGGCTTCGAGGTTCTGCCGCGTCGATGGGTGGTCGAACGGACCTTCGCCTGGCTTGGCAGAT
GCCGCAGATTGGCCAAAGACGTCGAACGCTCCATCGCATCAGCCGAAGCGTGGATCATGATCGCCCACATTCGTCTCATCACCAGACGGCTAGCAAGGTA
TGGATATCGTTGAACGCTTTTCGAATCCGACT
CGGCAATATGCCCGGCGAACGGCACGCTACGCAAGCGATATGACGGATCGGGAATGGGGTCTGGTTCAGCCTTTCCTGCCAATGCCGCGCCGCTTGGGCC
GCCCGCGGACCACGGATTTGCGAGAGGTGGTGAATGCCCTGCTTTACATCGCCACAACTGGTTGCCAATGGCGGATGCTGCCGAAGGATTTTCCACCCTG
CTCGACCGTCCAGCGCTATTTCTATGAATGGAGAGCGTTGGGACTTTGGCCACGCATCAACCATCGTCTCGTGATGGAAACGCGCGAGTTGGAGGGCAAG
GAGGCAAGCCCGACGGCCGGTGTGATCGATAGCCAGAGCGTCAAAACCACCGAAAGCGGCGGCATCCGGGGCTATGACGCGGGCAAGAAGACCAAAGGCC
GCAAGCGCCATATCATCATCGTCGATACGCTCGGCCTGATGGTCGGTCTCATGGTGCACAGCGCCGACATCCAGGATCGCGACGGTGCTCCCGATCTCCT
GAAATCCATCCGCCACAGGTGGCCATGGTTACTGCATGTCTTCGCCGATGGTGGCTATGCGGGCGATAAGTTGAAGCGGCGACTGAAAAAGATCGGGCGC
TGGACGATCGAGATCATCAAGCGCTCAGACAAGGCGAAAGGCTTCGAGGTTCTGCCGCGTCGATGGGTGGTCGAACGGACCTTCGCCTGGCTTGGCAGAT
GCCGCAGATTGGCCAAAGACGTCGAACGCTCCATCGCATCAGCCGAAGCGTGGATCATGATCGCCCACATTCGTCTCATCACCAGACGGCTAGCAAGGTA
TGGATATCGTTGAACGCTTTTCGAATCCGACT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
876 bp | 291 aa | 20 | 895 | + | No |
Chemistry : DDE
ORF sequence :
MIPSDLRDSMENTMAWTKITRRQYARRTARYASDMTDREWGLVQPFLPMPRRLGRPRTTDLREVVNALLYIATTGCQWRMLPKDFPPCSTVQRYFYEWRA
LGLWPRINHRLVMETRELEGKEASPTAGVIDSQSVKTTESGGIRGYDAGKKTKGRKRHIIIVDTLGLMVGLMVHSADIQDRDGAPDLLKSIRHRWPWLLH
VFADGGYAGDKLKRRLKKIGRWTIEIIKRSDKAKGFEVLPRRWVVERTFAWLGRCRRLAKDVERSIASAEAWIMIAHIRLITRRLARYGYR
LGLWPRINHRLVMETRELEGKEASPTAGVIDSQSVKTTESGGIRGYDAGKKTKGRKRHIIIVDTLGLMVGLMVHSADIQDRDGAPDLLKSIRHRWPWLLH
VFADGGYAGDKLKRRLKKIGRWTIEIIKRSDKAKGFEVLPRRWVVERTFAWLGRCRRLAKDVERSIASAEAWIMIAHIRLITRRLARYGYR
Blast result :
Comments
ISRtr4 is 90% aa similar to ISRm4.
References
1] Hernandez-Lucas,I., Xianwu,G., Gaytan,M.A., Ramirez-Trujillo,A., Perez-Rueda,E., Flores,M., Broughton,W., Martinez-Romero,E. and Mavingui,P. (2006) Unpublished results