ISRtr3
- Family IS5
- Group IS1031
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY753543 | ND | Rhizobium tropici | Rhizobium tropici CFN299 |
DNA section
IS Length : 931 bp
Ends
IR Length : 18/22
IRL : AGCCTGACCGAAAAAGAGTTGAGTGAAATCAGTCATTTGTGATTCTGTTT
IRR : GAGGCTGACTCAAAAAGACCTCAGCAATATCTTTATCTTGCGAGCCGCCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNNNNNNNN | TT | 0 |
DNA sequence
AGCCTGACCGAAAAAGAGTTGAGTGAAATCAGTCATTTGTGATTCTGTTTGTTTGCTTAGGACGAACGGAGACCACAATGGGTTGGACTGATTTCACCCG
TCGGCAATATGCCCGACGCGCGAGTCGTTATGCAAGTGATCTGACGGACCGGGAGTGGGGGTTGATCTCGCCTTGCCTACCTGGGCCAAGGCGTTTGGGC
AGGCCACGGAGAACCGATCTTCGCGAGGTCGTGAATGCGCTGCTTTATATTGCTTCGACGGGTTGTCAGTGGCGAATGCTGCCAAAGGACTTTCCACCGT
TTACGACAGTTCAAGCCTATTTCTACGAATGGCGGGCAATGGGTTTATGGGGCCGGATCAACCATCGTCTTGTGATGGAGACGCGCGAGCTGGAAGGTCG
GCAAGCCTCGCCGTCCGCTGGCGTGATCGACAGTCAGAGCGTGAAAACCACAGAAAGCGGCGGGATTTCGGGCTATGACGCCGGCAAGAAGCTCAAGGGG
CGAAAGCGCCACATCATTGTCGACACGCTGGGGCTGATGGTCGGCCTGATAGTGCATGGCGCGGACATTCAGGACCGTGATGGGGCATTCGGTCTCCTGA
AATCGATCCGCCACCGCTGGCCCTGGCTCCGACATGTTTTCGCCGATGGCGGCTATGCGGGCGACAAGCTGAAGGGGAGATTGGCGAAGTTCGGCCAGTG
GACAATTGAAATCGTCAAGCGTTCCGACAAGGCCAAGGGCTTCACTGTCCTGCCGCGCCGCTGGGTGGTGGAACGGACCTTCGCCTGGCTCGGTCGTTGC
CGTAGACTGGCCAAGGATTGGGAGAAAACGATCGCCTCCGCCGAGGCATGGATCACAATCGCCCACATCCGCATCCTTACACGGCGGCTCGCAAGATAAA
GATATTGCTGAGGTCTTTTTGAGTCAGCCTC
TCGGCAATATGCCCGACGCGCGAGTCGTTATGCAAGTGATCTGACGGACCGGGAGTGGGGGTTGATCTCGCCTTGCCTACCTGGGCCAAGGCGTTTGGGC
AGGCCACGGAGAACCGATCTTCGCGAGGTCGTGAATGCGCTGCTTTATATTGCTTCGACGGGTTGTCAGTGGCGAATGCTGCCAAAGGACTTTCCACCGT
TTACGACAGTTCAAGCCTATTTCTACGAATGGCGGGCAATGGGTTTATGGGGCCGGATCAACCATCGTCTTGTGATGGAGACGCGCGAGCTGGAAGGTCG
GCAAGCCTCGCCGTCCGCTGGCGTGATCGACAGTCAGAGCGTGAAAACCACAGAAAGCGGCGGGATTTCGGGCTATGACGCCGGCAAGAAGCTCAAGGGG
CGAAAGCGCCACATCATTGTCGACACGCTGGGGCTGATGGTCGGCCTGATAGTGCATGGCGCGGACATTCAGGACCGTGATGGGGCATTCGGTCTCCTGA
AATCGATCCGCCACCGCTGGCCCTGGCTCCGACATGTTTTCGCCGATGGCGGCTATGCGGGCGACAAGCTGAAGGGGAGATTGGCGAAGTTCGGCCAGTG
GACAATTGAAATCGTCAAGCGTTCCGACAAGGCCAAGGGCTTCACTGTCCTGCCGCGCCGCTGGGTGGTGGAACGGACCTTCGCCTGGCTCGGTCGTTGC
CGTAGACTGGCCAAGGATTGGGAGAAAACGATCGCCTCCGCCGAGGCATGGATCACAATCGCCCACATCCGCATCCTTACACGGCGGCTCGCAAGATAAA
GATATTGCTGAGGTCTTTTTGAGTCAGCCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
822 bp | 273 aa | 78 | 899 | + | No |
Chemistry : DDE
ORF sequence :
MGWTDFTRRQYARRASRYASDLTDREWGLISPCLPGPRRLGRPRRTDLREVVNALLYIASTGCQWRMLPKDFPPFTTVQAYFYEWRAMGLWGRINHRLVM
ETRELEGRQASPSAGVIDSQSVKTTESGGISGYDAGKKLKGRKRHIIVDTLGLMVGLIVHGADIQDRDGAFGLLKSIRHRWPWLRHVFADGGYAGDKLKG
RLAKFGQWTIEIVKRSDKAKGFTVLPRRWVVERTFAWLGRCRRLAKDWEKTIASAEAWITIAHIRILTRRLAR
ETRELEGRQASPSAGVIDSQSVKTTESGGISGYDAGKKLKGRKRHIIVDTLGLMVGLIVHGADIQDRDGAFGLLKSIRHRWPWLRHVFADGGYAGDKLKG
RLAKFGQWTIEIVKRSDKAKGFTVLPRRWVVERTFAWLGRCRRLAKDWEKTIASAEAWITIAHIRILTRRLAR
Blast result :
Comments
ISRtr3 is 93% aa similar to ISR12.A G is probably missing at the left end of this IS.
References
1] Hernandez-Lucas,I., Xianwu,G., Gaytan,M.A., Ramirez-Trujillo,A., Perez-Rueda,E., Flores,M., Broughton,W., Martinez-Romero,E. and Mavingui,P. Unpublished results