ISRtr3

  • Family IS5
  • Group IS1031
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY753543 ND Rhizobium tropici
Rhizobium tropici CFN299
DNA section
IS Length : 931 bp

Ends


IR Length : 18/22

IRL : AGCCTGACCGAAAAAGAGTTGAGTGAAATCAGTCATTTGTGATTCTGTTT
IRR : GAGGCTGACTCAAAAAGACCTCAGCAATATCTTTATCTTGCGAGCCGCCG

Insertion site


Left flankDirect repeatRight flankDR Length
NNNNNNNNNNTT0

DNA sequence

AGCCTGACCGAAAAAGAGTTGAGTGAAATCAGTCATTTGTGATTCTGTTTGTTTGCTTAGGACGAACGGAGACCACAATGGGTTGGACTGATTTCACCCG
TCGGCAATATGCCCGACGCGCGAGTCGTTATGCAAGTGATCTGACGGACCGGGAGTGGGGGTTGATCTCGCCTTGCCTACCTGGGCCAAGGCGTTTGGGC
AGGCCACGGAGAACCGATCTTCGCGAGGTCGTGAATGCGCTGCTTTATATTGCTTCGACGGGTTGTCAGTGGCGAATGCTGCCAAAGGACTTTCCACCGT
TTACGACAGTTCAAGCCTATTTCTACGAATGGCGGGCAATGGGTTTATGGGGCCGGATCAACCATCGTCTTGTGATGGAGACGCGCGAGCTGGAAGGTCG
GCAAGCCTCGCCGTCCGCTGGCGTGATCGACAGTCAGAGCGTGAAAACCACAGAAAGCGGCGGGATTTCGGGCTATGACGCCGGCAAGAAGCTCAAGGGG
CGAAAGCGCCACATCATTGTCGACACGCTGGGGCTGATGGTCGGCCTGATAGTGCATGGCGCGGACATTCAGGACCGTGATGGGGCATTCGGTCTCCTGA
AATCGATCCGCCACCGCTGGCCCTGGCTCCGACATGTTTTCGCCGATGGCGGCTATGCGGGCGACAAGCTGAAGGGGAGATTGGCGAAGTTCGGCCAGTG
GACAATTGAAATCGTCAAGCGTTCCGACAAGGCCAAGGGCTTCACTGTCCTGCCGCGCCGCTGGGTGGTGGAACGGACCTTCGCCTGGCTCGGTCGTTGC
CGTAGACTGGCCAAGGATTGGGAGAAAACGATCGCCTCCGCCGAGGCATGGATCACAATCGCCCACATCCGCATCCTTACACGGCGGCTCGCAAGATAAA
GATATTGCTGAGGTCTTTTTGAGTCAGCCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
822 bp273 aa78899+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGWTDFTRRQYARRASRYASDLTDREWGLISPCLPGPRRLGRPRRTDLREVVNALLYIASTGCQWRMLPKDFPPFTTVQAYFYEWRAMGLWGRINHRLVM
ETRELEGRQASPSAGVIDSQSVKTTESGGISGYDAGKKLKGRKRHIIVDTLGLMVGLIVHGADIQDRDGAFGLLKSIRHRWPWLRHVFADGGYAGDKLKG
RLAKFGQWTIEIVKRSDKAKGFTVLPRRWVVERTFAWLGRCRRLAKDWEKTIASAEAWITIAHIRILTRRLAR

 

Blast result :
Comments
ISRtr3 is 93% aa similar to ISR12.A G is probably missing at the left end of this IS.
References
1] Hernandez-Lucas,I., Xianwu,G., Gaytan,M.A., Ramirez-Trujillo,A., Perez-Rueda,E., Flores,M., Broughton,W., Martinez-Romero,E. and Mavingui,P. Unpublished results