ISPpu20
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AB238971 | ND | Pseudomonas putida | Pseudomonas putida MT53 plasmid pWW53 |
DNA section
IS Length : 1598 bp
Ends
IR Length : 16
IRL : CAGGCTGTGTGAAAACCTAGCAATCTGCTGACCGGTTAAAGAAAATGCCC
IRR : CAGACCGTGTGAAAACACAATCTGCCCCGGCTAAAAGCAAATGCcCCGAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAAACCCGCC | ATTAA | GGCGGGTTTT | 5 |
DNA sequence
CAGGCTGTGTGAAAACCTAGCAATCTGCTGACCGGTTAAAGAAAATGCCCGTATCGCAAGATACGGGCATTTTCCTTATGCGCTATATCCAAGGTGAAAA
CCGCTCTCAGAGCGCGCTGTTTCCACTCTCGCTGGACGAACTCATTCCCGAGGATCACCTGGTTCGGGTCATCGAAGCCTACATTTCCCTTCTGGACTTT
GAGCAGTTGGGCTTCGACAAAGCCAGACCCAAGGCCACGGGACGCCCTTCGTACGACCCTGCCGATTTGCTCAAACTCTATCTTTACGGCTATTTCCAGC
GGATTCGCTCCTCGCGACGCCTTGAGGCTGAGTGTCAGCGCAACGTcGAAGTCATGTGGCTATTGGGCCGACTGGCACCTGATTTCAAAACCATTGCTGA
TTTTCGACGCGACAACAGCGCTGCGTTTACCGCGACCTGTCGTGCCTTCGTTCGTTTCTGCCGAGAGGCTGGTCTGATTGCCGGCGAGTTGGTGGCCATC
GATGGCAGCAAGTTTCAGGCGGTGGCTTCCAGGCGCAGACACCTGACGCCGAAAAAGCTCCAGCATCGGGAAGCGGCGCTCGACAAGAAAATTGCGCGTT
ATCTGGCGCAACTCGATGAAGCGGATCGTGATGAAGAGGGCGAGTCGATCGACCGCTCAGCCGTGCAGGCGGCACTGGCGCAGTTACAGGTAAAAAAGAC
CAATAACCAGACCTGCCAAGTGCTGATGCAAGCTCAAGGTCTGGTTCAGCACATTGTGGGCGAGCCTGATGCGCAGAAAATGCGAACGGCATCCGGCCCG
CTCGTGGCCTACAACATTCAGAGTGCGGTGGACGCCAAACATGGCCTGATTCTGCACCACGAAGTCACTCAGGAAGGCACTGACAATCGTCAACTTGAAC
CGATGGCCAAGGCGGCCAAAGAGGCGCTCAAGCAATCCGAACTTTGCGTCACCGCCGATGCAGGTTACTCCAATGGCGCCCAGTTTCAGGCCTGTGAAGA
CGCCGGCATCACGGCGTTTGTGCCGCCCAATCGAGCCATCAACACCACCGGTGGCGACGAGCAGTACTTTGATCGAACCGAATTCAGCTATGACTCGGAC
AGCGATCAATATCAGTGCCCCGCCGGCAACCAACTGAGCCTCAAACAACTGAGCAAGGGCGACCGGATCTATCAGGCGGCTATCAGCGACTGCCGAAGTT
GTCCGCTCAAAAGCCGCTGCACCAAGGCCGAACGCCGGTACCTGACGCGCCATGCCCACGAAGCGGCATTTGAGCGAATGGAGCGGCGAATGAAGGCCCA
CCCTGAAATGATGGTCAATCGCCGATCCATCGTCGAGCATCCCTTCGGCAATCTGAAGCAATGGATCTTCGGCAACGGCCGCTTCTTGTTGCGCCAGTTG
CAGGGCGCTCGTGCAGAAATGGCGCTTGCGGTACAGGCCTACAACTTGAAAAGGGTTATCCAGGTGCTGGGAGCACAGAAGCTGATGGCGCTGATGGGCT
GAGAAGCCCTTTATTTTTCAGATTTCAGAAAAGCAAATGCCCCGACAAGTCGGgGCATTTGCTTTTAGCCGGGGCAGATTGTGTTTTCACACGGTCTG
CCGCTCTCAGAGCGCGCTGTTTCCACTCTCGCTGGACGAACTCATTCCCGAGGATCACCTGGTTCGGGTCATCGAAGCCTACATTTCCCTTCTGGACTTT
GAGCAGTTGGGCTTCGACAAAGCCAGACCCAAGGCCACGGGACGCCCTTCGTACGACCCTGCCGATTTGCTCAAACTCTATCTTTACGGCTATTTCCAGC
GGATTCGCTCCTCGCGACGCCTTGAGGCTGAGTGTCAGCGCAACGTcGAAGTCATGTGGCTATTGGGCCGACTGGCACCTGATTTCAAAACCATTGCTGA
TTTTCGACGCGACAACAGCGCTGCGTTTACCGCGACCTGTCGTGCCTTCGTTCGTTTCTGCCGAGAGGCTGGTCTGATTGCCGGCGAGTTGGTGGCCATC
GATGGCAGCAAGTTTCAGGCGGTGGCTTCCAGGCGCAGACACCTGACGCCGAAAAAGCTCCAGCATCGGGAAGCGGCGCTCGACAAGAAAATTGCGCGTT
ATCTGGCGCAACTCGATGAAGCGGATCGTGATGAAGAGGGCGAGTCGATCGACCGCTCAGCCGTGCAGGCGGCACTGGCGCAGTTACAGGTAAAAAAGAC
CAATAACCAGACCTGCCAAGTGCTGATGCAAGCTCAAGGTCTGGTTCAGCACATTGTGGGCGAGCCTGATGCGCAGAAAATGCGAACGGCATCCGGCCCG
CTCGTGGCCTACAACATTCAGAGTGCGGTGGACGCCAAACATGGCCTGATTCTGCACCACGAAGTCACTCAGGAAGGCACTGACAATCGTCAACTTGAAC
CGATGGCCAAGGCGGCCAAAGAGGCGCTCAAGCAATCCGAACTTTGCGTCACCGCCGATGCAGGTTACTCCAATGGCGCCCAGTTTCAGGCCTGTGAAGA
CGCCGGCATCACGGCGTTTGTGCCGCCCAATCGAGCCATCAACACCACCGGTGGCGACGAGCAGTACTTTGATCGAACCGAATTCAGCTATGACTCGGAC
AGCGATCAATATCAGTGCCCCGCCGGCAACCAACTGAGCCTCAAACAACTGAGCAAGGGCGACCGGATCTATCAGGCGGCTATCAGCGACTGCCGAAGTT
GTCCGCTCAAAAGCCGCTGCACCAAGGCCGAACGCCGGTACCTGACGCGCCATGCCCACGAAGCGGCATTTGAGCGAATGGAGCGGCGAATGAAGGCCCA
CCCTGAAATGATGGTCAATCGCCGATCCATCGTCGAGCATCCCTTCGGCAATCTGAAGCAATGGATCTTCGGCAACGGCCGCTTCTTGTTGCGCCAGTTG
CAGGGCGCTCGTGCAGAAATGGCGCTTGCGGTACAGGCCTACAACTTGAAAAGGGTTATCCAGGTGCTGGGAGCACAGAAGCTGATGGCGCTGATGGGCT
GAGAAGCCCTTTATTTTTCAGATTTCAGAAAAGCAAATGCCCCGACAAGTCGGgGCATTTGCTTTTAGCCGGGGCAGATTGTGTTTTCACACGGTCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1458 bp | 485 aa | 45 | 1502 | + | No |
Chemistry : DDE
ORF sequence :
MPVSQDTGIFLMRYIQGENRSQSALFPLSLDELIPEDHLVRVIEAYISLLDFEQLGFDKARPKATGRPSYDPADLLKLYLYGYFQRIRSSRRLEAECQRN
VEVMWLLGRLAPDFKTIADFRRDNSAAFTATCRAFVRFCREAGLIAGELVAIDGSKFQAVASRRRHLTPKKLQHREAALDKKIARYLAQLDEADRDEEGE
SIDRSAVQAALAQLQVKKTNNQTCQVLMQAQGLVQHIVGEPDAQKMRTASGPLVAYNIQSAVDAKHGLILHHEVTQEGTDNRQLEPMAKAAKEALKQSEL
CVTADAGYSNGAQFQACEDAGITAFVPPNRAINTTGGDEQYFDRTEFSYDSDSDQYQCPAGNQLSLKQLSKGDRIYQAAISDCRSCPLKSRCTKAERRYL
TRHAHEAAFERMERRMKAHPEMMVNRRSIVEHPFGNLKQWIFGNGRFLLRQLQGARAEMALAVQAYNLKRVIQVLGAQKLMALMG
VEVMWLLGRLAPDFKTIADFRRDNSAAFTATCRAFVRFCREAGLIAGELVAIDGSKFQAVASRRRHLTPKKLQHREAALDKKIARYLAQLDEADRDEEGE
SIDRSAVQAALAQLQVKKTNNQTCQVLMQAQGLVQHIVGEPDAQKMRTASGPLVAYNIQSAVDAKHGLILHHEVTQEGTDNRQLEPMAKAAKEALKQSEL
CVTADAGYSNGAQFQACEDAGITAFVPPNRAINTTGGDEQYFDRTEFSYDSDSDQYQCPAGNQLSLKQLSKGDRIYQAAISDCRSCPLKSRCTKAERRYL
TRHAHEAAFERMERRMKAHPEMMVNRRSIVEHPFGNLKQWIFGNGRFLLRQLQGARAEMALAVQAYNLKRVIQVLGAQKLMALMG
Blast result :
Comments
ISPpu20 is located on pWW53. ORF1 exhibits 71% amino acid identity with ISPsy6 ORF1
References
1] Yano, H., Tsuda, M. (2006) Direct Submission
2] Yano,H., Garruto,C.E., Sota,M., Ohtsubo,Y., Nagata,Y., Zylstra,G.J., Williams,P.A. and Tsuda,M.(2007) J. Mol. Biol. 369 (1), 11-26
2] Yano,H., Garruto,C.E., Sota,M., Ohtsubo,Y., Nagata,Y., Zylstra,G.J., Williams,P.A. and Tsuda,M.(2007) J. Mol. Biol. 369 (1), 11-26