ISMyma6
- Family IS481
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| Y | Mycobacterium marinum | Mycobacterium marinum M |
DNA section
IS Length : 1072 bp
Ends
IR Length : 22/32
IRL : TGTAACTCCCAGCGAGGTTGTGAACGGCGTGGCTAGCGGGAAATAGGTGA
IRR : TGTTCTTCACTGGCAGGTTGTGAACGCGTAGGCGTTCGATGGGTGTTTTT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CGCGCACCGC | CCTAGT | CCGAGTCCAA | 6 |
DNA sequence
TGTAACTCCCAGCGAGGTTGTGAACGGCGTGGCTAGCGGGAAATAGGTGAGGACCTCCGGTATCGGTGTGGTTACCACACACACCCCGATCACCGAGAGG
TCCTCATGTCCCACGCTAATGCCTCATTGACTCCGCGGGGGCGGTTGCGGCTGGCCCGCTGTGTCGTCGACGACCGTTGGACCTATGCCCGAGCCGCCGA
GCGGTTCCAGTGCTCGACGGCCACGGCCAAGAAATGGGCTGACCGTTACCGCGTTGGCGGTCCAGAGGCCATGGTCGATCGCTCCAGTCGTCCGCATCGC
AGTCCAGGTCGGCTTCCCCAGCGTCGGGAGCGGCGCATCATCAAAATCCGCTTCACGCGGCGCTGGGGGCCGCACCGCATCGCCGCGCACTTGCGGCTGG
CCCGCTCGACGGTGGAAGCGGTGCTGCGCCGTTACCGGATGCCGTTGCTGCGCGATCTCGATCAAGCCAGTGGGCTGCCGGTGCGCCGGCCCCAACCGCG
CCGTTACGAGCATCCCGCACCCGGGGATTTGGTTCACCTCGACGTCAAGAAGCTAGGTCGCATTCCCGACGGTGGTGGGCACCGCAAGTTGGGTCGTCAC
GCCGGTCGACGCAACCGTAGCGGCGTGGGGTATGCGTTTGTGCACCATGCCGTCGATGATCATTCGCGGCTGGCCTACTCCGAGATCCTCACCGACGAAC
GTAAAGACACCGCCGCAGGGTTCTGGTTGCGGGCTAACGGGTTTTTCGTCGATCACGGGATCACAGTCAAGCGTGTGTTGACTGACAACGGAAACTGTTA
CCGGTCAAAAGTTTTCGCCGATTCACTCGGCGAGGAGATCGCCCACAAGCGCACTCGCCCGTACCGTCCTCAGACCAACGGAAAAGTCGAGAGGTTCAAC
CGCACCCTGGCCAGCGAATGGGCCTACGCGCAGACCTACCTGTCGGAGGTCCAACGCGCGGCAACTTATCAGGACTGGCTGCACTACTACAATCACCATC
GACCCCACACCGGCATCGGCGGAAAAACACCCATCGAACGCCTACGCGTTCACAACCTGCCAGTGAAGAACA
TCCTCATGTCCCACGCTAATGCCTCATTGACTCCGCGGGGGCGGTTGCGGCTGGCCCGCTGTGTCGTCGACGACCGTTGGACCTATGCCCGAGCCGCCGA
GCGGTTCCAGTGCTCGACGGCCACGGCCAAGAAATGGGCTGACCGTTACCGCGTTGGCGGTCCAGAGGCCATGGTCGATCGCTCCAGTCGTCCGCATCGC
AGTCCAGGTCGGCTTCCCCAGCGTCGGGAGCGGCGCATCATCAAAATCCGCTTCACGCGGCGCTGGGGGCCGCACCGCATCGCCGCGCACTTGCGGCTGG
CCCGCTCGACGGTGGAAGCGGTGCTGCGCCGTTACCGGATGCCGTTGCTGCGCGATCTCGATCAAGCCAGTGGGCTGCCGGTGCGCCGGCCCCAACCGCG
CCGTTACGAGCATCCCGCACCCGGGGATTTGGTTCACCTCGACGTCAAGAAGCTAGGTCGCATTCCCGACGGTGGTGGGCACCGCAAGTTGGGTCGTCAC
GCCGGTCGACGCAACCGTAGCGGCGTGGGGTATGCGTTTGTGCACCATGCCGTCGATGATCATTCGCGGCTGGCCTACTCCGAGATCCTCACCGACGAAC
GTAAAGACACCGCCGCAGGGTTCTGGTTGCGGGCTAACGGGTTTTTCGTCGATCACGGGATCACAGTCAAGCGTGTGTTGACTGACAACGGAAACTGTTA
CCGGTCAAAAGTTTTCGCCGATTCACTCGGCGAGGAGATCGCCCACAAGCGCACTCGCCCGTACCGTCCTCAGACCAACGGAAAAGTCGAGAGGTTCAAC
CGCACCCTGGCCAGCGAATGGGCCTACGCGCAGACCTACCTGTCGGAGGTCCAACGCGCGGCAACTTATCAGGACTGGCTGCACTACTACAATCACCATC
GACCCCACACCGGCATCGGCGGAAAAACACCCATCGAACGCCTACGCGTTCACAACCTGCCAGTGAAGAACA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 967 bp | 323 aa | 106 | 1072 | + | No |
Chemistry : DDE
ORF sequence :
MSHANASLTPRGRLRLARCVVDDRWTYARAAERFQCSTATAKKWADRYRVGGPEAMVDRSSRPHRSPGRLPQRRERRIIKIRFTRRWGPHRIAAHLRLAR
STVEAVLRRYRMPLLRDLDQASGLPVRRPQPRRYEHPAPGDLVHLDVKKLGRIPDGGGHRKLGRHAGRRNRSGVGYAFVHHAVDDHSRLAYSEILTDERK
DTAAGFWLRANGFFVDHGITVKRVLTDNGNCYRSKVFADSLGEEIAHKRTRPYRPQTNGKVERFNRTLASEWAYAQTYLSEVQRAATYQDWLHYYNHHRP
HTGIGGKTPIERLRVHNLPVKNT
STVEAVLRRYRMPLLRDLDQASGLPVRRPQPRRYEHPAPGDLVHLDVKKLGRIPDGGGHRKLGRHAGRRNRSGVGYAFVHHAVDDHSRLAYSEILTDERK
DTAAGFWLRANGFFVDHGITVKRVLTDNGNCYRSKVFADSLGEEIAHKRTRPYRPQTNGKVERFNRTLASEWAYAQTYLSEVQRAATYQDWLHYYNHHRP
HTGIGGKTPIERLRVHNLPVKNT
Blast result :
Comments
The last nucleotide of the IR-R and the first 5 bp of the DR form the last two codons of the transposase ie ACC TAG. I have included these in the peptide prediction but not in the coordinates for the peptide.
ISMyma6 is 70% aa similar to ISAni1.
ISMyma6 is 70% aa similar to ISAni1.
References
1] Stinear T. (2006) Direct submission.