ISBcen19
- Family IS66
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Burkholderia cenocepacia | Burkholderia cenocepacia J2315 |
DNA section
IS Length : 2450 bp
Ends
IR Length : 19
IRL : GTAAGCGGCCAGCCAACCCGTCTTGAGTTTGGCCGAGGCGCTTGGGAGTA
IRR : GTAAGCGGCCAGCCAACCCATCTTGACGAGCGAGTTTAGGCGGCGGCCGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCGTTCGTGT | CGACGCCCAC | 0 | |
TCACGTCAAC | ACGTCAACAA | 0 |
DNA sequence
GTAAGCGGCCAGCCAACCCGTCTTGAGTTTGGCCGAGGCGCTTGGGAGTATCGTGTCCACTTAACGAATAAGCGGACACGTGAACACTATCGAATCGGAA
TCACTCCCGGAGCGTCGTCGTCGGCAACGCTATAGTGAGGAGTTCAAGGCGCAGGTGGTAGCGGCCTGCCAGGGAATCGGCGTATCGGTTGCGGCGGTCG
CTCTGGAACACAGGCTCAACGCGAATCTGCTGCGGCGCTGGATCGATCAGGCGGAAGGCCGACTTCCCAAGAGACCGCTGGGCCGTCCGCCGGCCACGCC
ACCGTCGCTGCCAGCCTTTGTGCCGGTGGCATTGGGAGCGCCGAGTCCGCATTCGCCGGAGATCCGCATTGAGATTCGCCGAGGAGATCAGTCGATCACG
GTGAGTTGGCCGGTATCCGAGGCAACCCAGTGTGCCGTCTGGCTGCGCGAGTGGCTGCGGTGATTCGTGTCGACGAGATCTGGCTGGCGGTCGATCCACT
GGACATGCGGGCCGGTTTCGACACGGCCCTGGCACGTGTGGTCAAGGTGTTCGGCGCCGCGCACCCACACCATGCCTATCTGTTCGCCAATCGGCGCGCC
ACCCGCATGAAGGTCCTGATTCACGACGGGATCGGCATCTGGCTGGCCGCGCGACGCCTGAATCAAGGGCAGTTCGCGTGGCCGCACATCGGCAGCGAAC
CGAAGCAGCGTGTCTTGACGCACGAACAACTGGCCGGCCTGGTGCTGGGCTTGCCCTGGCAACGCATCGGCGAGGATGGCGTGATCCGTGTCGTCTAAAT
CCGGCGGGGAGGTAAACAGTCACGCTTCCTCCGTCGGCAGGGTTCTGGCAGACTGACCCGCATGAACCCCGCCGACCTCGACGCACTCAACCCGGAACAG
TTGCGCGCCCTTGCCGCGCAACTGATTGCCGAGGTCAAGGAGAAGGAGCGGGAAGCGAGTGAACGAGACAGGGAGCTACGCTTCCGGCAGACCCGTATCG
ATCAACTCACCCATGAGGTCTCGATCCTCAAGCGCCAGCAGTTCGGCCGGCGCAGCGAACAGCTCAACAGCGAGCAGATGAACCTGCTCGACGAGGCCAT
CGATGGCGACTTGGTTGCCATCGAGATGGAACTCGAGCAACTCGAGCCGACGCGAGCTGAACGGCAACGCGAGCAACCGAAACGGGCACTGCTGCCGCCG
CAACTGCCACGCACCGACGTCCATCACGAACCGGACAGCACAACGTGCCAGTGCGGTTGCGAACGCATACGGATCGGCGAGGACGTGAGCGAGAAGCTGG
ACTACACGCCGGGCGTGTTTACGGTGGAACGGCACATCCGCGGCAAGTGGGTGTGCAAGGCGTGCGAGACGCTGATCCAGGCGCCGGTTCCACCGCATGT
GATCGACAAGGGCATGCCCACCGCCGGGTTGCTCGCGCAGGTACTGGTCGCTAAGTACGGCGACCACTTGCCCCTGTATCGCCAGGAACAGATCTTTGGT
CGTGCGGGACTGGCCATCCCGAGATCCACGCTGGGTGCCTGGGTGGGCCGGTGTGGCGTGCAGTTGCAGCCGTTGGTCGACGCACTCGGCCAGGCCATCC
GGCAACAGGCGGTGTTGCACGCCGACGAGACGCCGGTGCAAATGCTCAGTCCCGGCAAGGGTAAAACGCACCGGGCATACCTGTGGGCGTATACGTCGAC
TCAGTTCAGCGAACTGCGCGCGGTGGTCTACGACTTCGCCGAGAGCCGCGCCGGTGCGCACGCTCGCACGTTCCTGAAGGGCTGGCACGGCAAGCTGGTA
TGCGACGACTACAGCGGGTACAAAGCCTCGTTCCAGCACGGCATCACCGAGATCGGATGCGCGGCCCATGCCCGACGCAAGTTCTTTGAATTGCACGCCA
ACCACAGCAGCCAGGTTGCGGGGCAGGCCCTGCCGTTCTTTACCGCGCTCTACGACATCGAACGCGAAGCCGCAGCACTGGATGCCGACGAACGGCAGCG
GCTTAGACAGCGTCGGGCCAAGCCGGTGTGCGACGCCCTCTATGAATGGCTGATGGCGCAGCGCAAACTCGTTGTGGAGGGCTCGGCGATTGCGAAGGCG
CTGGACTACAGCCTGAAACGATGGGATGCACTCACGCGCTATCTCGATGACGGGAATGTGCCGATCGACAACAACTGGGTCGAAAACCAGATCCGTCCGT
GGGCAGTCGGGCGGTCCAATTGGTTGTTCGCCGGATCACTGCGTGCGGGTCAGCGCGCGGCCGCCATCATGAGCTTGATCCGCTCGGCACAACTGAACGG
GCTCGAGCCTCTCGCCTATCTGAAGGACGTGCTGACGCGCTTGCCGACCCACAAGGCCAACGACATCGACGCGCTGCTGCCGCATCGCTGGCAGCCACTC
TCGGCCGCCGCCTAAACTCGCTCGTCAAGATGGGTTGGCTGGCCGCTTAC
TCACTCCCGGAGCGTCGTCGTCGGCAACGCTATAGTGAGGAGTTCAAGGCGCAGGTGGTAGCGGCCTGCCAGGGAATCGGCGTATCGGTTGCGGCGGTCG
CTCTGGAACACAGGCTCAACGCGAATCTGCTGCGGCGCTGGATCGATCAGGCGGAAGGCCGACTTCCCAAGAGACCGCTGGGCCGTCCGCCGGCCACGCC
ACCGTCGCTGCCAGCCTTTGTGCCGGTGGCATTGGGAGCGCCGAGTCCGCATTCGCCGGAGATCCGCATTGAGATTCGCCGAGGAGATCAGTCGATCACG
GTGAGTTGGCCGGTATCCGAGGCAACCCAGTGTGCCGTCTGGCTGCGCGAGTGGCTGCGGTGATTCGTGTCGACGAGATCTGGCTGGCGGTCGATCCACT
GGACATGCGGGCCGGTTTCGACACGGCCCTGGCACGTGTGGTCAAGGTGTTCGGCGCCGCGCACCCACACCATGCCTATCTGTTCGCCAATCGGCGCGCC
ACCCGCATGAAGGTCCTGATTCACGACGGGATCGGCATCTGGCTGGCCGCGCGACGCCTGAATCAAGGGCAGTTCGCGTGGCCGCACATCGGCAGCGAAC
CGAAGCAGCGTGTCTTGACGCACGAACAACTGGCCGGCCTGGTGCTGGGCTTGCCCTGGCAACGCATCGGCGAGGATGGCGTGATCCGTGTCGTCTAAAT
CCGGCGGGGAGGTAAACAGTCACGCTTCCTCCGTCGGCAGGGTTCTGGCAGACTGACCCGCATGAACCCCGCCGACCTCGACGCACTCAACCCGGAACAG
TTGCGCGCCCTTGCCGCGCAACTGATTGCCGAGGTCAAGGAGAAGGAGCGGGAAGCGAGTGAACGAGACAGGGAGCTACGCTTCCGGCAGACCCGTATCG
ATCAACTCACCCATGAGGTCTCGATCCTCAAGCGCCAGCAGTTCGGCCGGCGCAGCGAACAGCTCAACAGCGAGCAGATGAACCTGCTCGACGAGGCCAT
CGATGGCGACTTGGTTGCCATCGAGATGGAACTCGAGCAACTCGAGCCGACGCGAGCTGAACGGCAACGCGAGCAACCGAAACGGGCACTGCTGCCGCCG
CAACTGCCACGCACCGACGTCCATCACGAACCGGACAGCACAACGTGCCAGTGCGGTTGCGAACGCATACGGATCGGCGAGGACGTGAGCGAGAAGCTGG
ACTACACGCCGGGCGTGTTTACGGTGGAACGGCACATCCGCGGCAAGTGGGTGTGCAAGGCGTGCGAGACGCTGATCCAGGCGCCGGTTCCACCGCATGT
GATCGACAAGGGCATGCCCACCGCCGGGTTGCTCGCGCAGGTACTGGTCGCTAAGTACGGCGACCACTTGCCCCTGTATCGCCAGGAACAGATCTTTGGT
CGTGCGGGACTGGCCATCCCGAGATCCACGCTGGGTGCCTGGGTGGGCCGGTGTGGCGTGCAGTTGCAGCCGTTGGTCGACGCACTCGGCCAGGCCATCC
GGCAACAGGCGGTGTTGCACGCCGACGAGACGCCGGTGCAAATGCTCAGTCCCGGCAAGGGTAAAACGCACCGGGCATACCTGTGGGCGTATACGTCGAC
TCAGTTCAGCGAACTGCGCGCGGTGGTCTACGACTTCGCCGAGAGCCGCGCCGGTGCGCACGCTCGCACGTTCCTGAAGGGCTGGCACGGCAAGCTGGTA
TGCGACGACTACAGCGGGTACAAAGCCTCGTTCCAGCACGGCATCACCGAGATCGGATGCGCGGCCCATGCCCGACGCAAGTTCTTTGAATTGCACGCCA
ACCACAGCAGCCAGGTTGCGGGGCAGGCCCTGCCGTTCTTTACCGCGCTCTACGACATCGAACGCGAAGCCGCAGCACTGGATGCCGACGAACGGCAGCG
GCTTAGACAGCGTCGGGCCAAGCCGGTGTGCGACGCCCTCTATGAATGGCTGATGGCGCAGCGCAAACTCGTTGTGGAGGGCTCGGCGATTGCGAAGGCG
CTGGACTACAGCCTGAAACGATGGGATGCACTCACGCGCTATCTCGATGACGGGAATGTGCCGATCGACAACAACTGGGTCGAAAACCAGATCCGTCCGT
GGGCAGTCGGGCGGTCCAATTGGTTGTTCGCCGGATCACTGCGTGCGGGTCAGCGCGCGGCCGCCATCATGAGCTTGATCCGCTCGGCACAACTGAACGG
GCTCGAGCCTCTCGCCTATCTGAAGGACGTGCTGACGCGCTTGCCGACCCACAAGGCCAACGACATCGACGCGCTGCTGCCGCATCGCTGGCAGCCACTC
TCGGCCGCCGCCTAAACTCGCTCGTCAAGATGGGTTGGCTGGCCGCTTAC
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
384 bp | 127 aa | 80 | 463 | + | No |
AG : IS66 TnpA
ORF sequence :
MNTIESESLPERRRRQRYSEEFKAQVVAACQGIGVSVAAVALEHRLNANLLRRWIDQAEGRLPKRPLGRPPATPPSLPAFVPVALGAPSPHSPEIRIEIR
RGDQSITVSWPVSEATQCAVWLREWLR
RGDQSITVSWPVSEATQCAVWLREWLR
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
339 bp | 112 aa | 460 | 798 | + | No |
AG : IS66 TnpB
ORF sequence :
MIRVDEIWLAVDPLDMRAGFDTALARVVKVFGAAHPHHAYLFANRRATRMKVLIHDGIGIWLAARRLNQGQFAWPHIGSEPKQRVLTHEQLAGLVLGLPW
QRIGEDGVIRVV
QRIGEDGVIRVV
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1554 bp | 517 aa | 862 | 2415 | + | No |
Chemistry : DDE
ORF sequence :
MNPADLDALNPEQLRALAAQLIAEVKEKEREASERDRELRFRQTRIDQLTHEVSILKRQQFGRRSEQLNSEQMNLLDEAIDGDLVAIEMELEQLEPTRAE
RQREQPKRALLPPQLPRTDVHHEPDSTTCQCGCERIRIGEDVSEKLDYTPGVFTVERHIRGKWVCKACETLIQAPVPPHVIDKGMPTAGLLAQVLVAKYG
DHLPLYRQEQIFGRAGLAIPRSTLGAWVGRCGVQLQPLVDALGQAIRQQAVLHADETPVQMLSPGKGKTHRAYLWAYTSTQFSELRAVVYDFAESRAGAH
ARTFLKGWHGKLVCDDYSGYKASFQHGITEIGCAAHARRKFFELHANHSSQVAGQALPFFTALYDIEREAAALDADERQRLRQRRAKPVCDALYEWLMAQ
RKLVVEGSAIAKALDYSLKRWDALTRYLDDGNVPIDNNWVENQIRPWAVGRSNWLFAGSLRAGQRAAAIMSLIRSAQLNGLEPLAYLKDVLTRLPTHKAN
DIDALLPHRWQPLSAAA
RQREQPKRALLPPQLPRTDVHHEPDSTTCQCGCERIRIGEDVSEKLDYTPGVFTVERHIRGKWVCKACETLIQAPVPPHVIDKGMPTAGLLAQVLVAKYG
DHLPLYRQEQIFGRAGLAIPRSTLGAWVGRCGVQLQPLVDALGQAIRQQAVLHADETPVQMLSPGKGKTHRAYLWAYTSTQFSELRAVVYDFAESRAGAH
ARTFLKGWHGKLVCDDYSGYKASFQHGITEIGCAAHARRKFFELHANHSSQVAGQALPFFTALYDIEREAAALDADERQRLRQRRAKPVCDALYEWLMAQ
RKLVVEGSAIAKALDYSLKRWDALTRYLDDGNVPIDNNWVENQIRPWAVGRSNWLFAGSLRAGQRAAAIMSLIRSAQLNGLEPLAYLKDVLTRLPTHKAN
DIDALLPHRWQPLSAAA
Blast result :
Comments
There are 2 copies on J2315 chromosome.
ISBcen19 is 54% (ORF1), 79% (ORf2) and 79%(ORF3) aa similar to ISPpu14.
ISBcen19 is 54% (ORF1), 79% (ORf2) and 79%(ORF3) aa similar to ISPpu14.
References
1] The Wellcome Trust Sanger Institute. http://www.sanger.ac.uk
2] Seth-Smith Helena (2006) Direct submission
2] Seth-Smith Helena (2006) Direct submission