ISBcen20
- Family IS5
- Group IS427
Isoform IS402Synonym(s) ISBmu15
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Burkholderia cenocepacia | Burkholderia cenocepacia J2315 Burkholderia multivorans ATCC 17616 |
DNA section
IS Length : 914 bp
Ends
IR Length : 17
IRL : GAGACGGTTTCAAAAAGGCCCGGTGGGGCTGTTAACTTGCGCGGCGAGCT
IRR : GAGACGGTTTCATAAAGACTGGTCGGCCCGCCGAAGGGTATTCCAGCAGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GACCGAAAGT | TTA | GATCGAAACG | 3 |
AGCAAAAGAC | AAA | GGCAACAAAG | 3 |
GCTTGGTGAT | TAA | GACTGACGTA | 3 |
CTTCCGGTCC | TTA | AAAGATCTGA | 3 |
CTTGAGAAGC | TTA | ATTTGTCATA | 3 |
ATGATATGAC | TTA | CGTTCTTCAC | 3 |
GCTACGAGCC | TAA | GAAGCCGCGA | 3 |
GTCAATGTAC | TTA | AAAGGAAAAC | 3 |
GGTGTCCATC | TAA | GGTTGTGTGG | 3 |
DNA sequence
GAGACGGTTTCAAAAAGGCCCGGTGGGGCTGTTAACTTGCGCGGCGAGCTGTTAACCTCAGGCATCGGAACAACTGAGACCGAGGAGATGGCCAAGCCGA
TCATTGACGACGAACTGTGGACATTGATCGAGCCGTTATTGCCGCCACCCAAGCCGCGGCGCGAGAAAAACCCAGGCCGCCTGCCTGTTTCGAATCGCGC
CGCGCTGACCGGCATCCTGTTCGTTCTCAAGACCGGACTGCGCTGGCGCGACCTGCCCGCCGAGATGGGCTGCGGCTCGGGCGTGACTTGCTGGCGACGG
CTACGCGATTGGCAGGCTGCGGGCGTATGGGATCGCCTGCACGAATTGCTGCTTGCGAAGCTGCGAGCAGCAGACCAAATCGATTTCTCGCGAGCCGCAG
TCGATTCCTCATCGATTCGCGCCGTTGGGGCGGGCCAAAAACTGGGCCAAACCCCACCGATCGCGCGCGACCAGGTTCTAAGCACCACATCGTCACCGAC
GCCAATGGCACGCCGCTCGCGGCGATCCTGACCGGCGCGAACGTTCACGATGTCACGCAGCTGCTGCCGCTGATCGATGCGATTCCGCCAATTCGTGGGT
TGCGCGGCCACCCACTGCAGAGACCGCGCGTGGTCTACGCCGATCGCGGTTACGACTCTGAGCGGCATCGACGCGCGTTGCGCGATCGCGGTATCGAGCC
GGTTATCGCCAAGCGCCGCACCGAACATGGCAGCGGCCTTGGAAAATATCGCTGGGTCGTTGAACGCACGCATGCCTGGCTGCATCACTTCCGTCGTCTC
CGCATTCGTTTCGAGCGCCGTGCAGACATTCACGGCGCGTTCCTCAAACTCGGTTGCTGCCTGATCTGCTGGAATACCCTTCGGCGGGCCGACCAGTCTT
TATGAAACCGTCTC
TCATTGACGACGAACTGTGGACATTGATCGAGCCGTTATTGCCGCCACCCAAGCCGCGGCGCGAGAAAAACCCAGGCCGCCTGCCTGTTTCGAATCGCGC
CGCGCTGACCGGCATCCTGTTCGTTCTCAAGACCGGACTGCGCTGGCGCGACCTGCCCGCCGAGATGGGCTGCGGCTCGGGCGTGACTTGCTGGCGACGG
CTACGCGATTGGCAGGCTGCGGGCGTATGGGATCGCCTGCACGAATTGCTGCTTGCGAAGCTGCGAGCAGCAGACCAAATCGATTTCTCGCGAGCCGCAG
TCGATTCCTCATCGATTCGCGCCGTTGGGGCGGGCCAAAAACTGGGCCAAACCCCACCGATCGCGCGCGACCAGGTTCTAAGCACCACATCGTCACCGAC
GCCAATGGCACGCCGCTCGCGGCGATCCTGACCGGCGCGAACGTTCACGATGTCACGCAGCTGCTGCCGCTGATCGATGCGATTCCGCCAATTCGTGGGT
TGCGCGGCCACCCACTGCAGAGACCGCGCGTGGTCTACGCCGATCGCGGTTACGACTCTGAGCGGCATCGACGCGCGTTGCGCGATCGCGGTATCGAGCC
GGTTATCGCCAAGCGCCGCACCGAACATGGCAGCGGCCTTGGAAAATATCGCTGGGTCGTTGAACGCACGCATGCCTGGCTGCATCACTTCCGTCGTCTC
CGCATTCGTTTCGAGCGCCGTGCAGACATTCACGGCGCGTTCCTCAAACTCGGTTGCTGCCTGATCTGCTGGAATACCCTTCGGCGGGCCGACCAGTCTT
TATGAAACCGTCTC
Recoding section
- Recoding by frameshift
- Frame -1
- Type translational
- Experimentally demonstrated No
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
442 bp | 147 aa | 88 | 529 | + | No |
Description : First part of the transposase
ORF sequence :
MAKPIIDDELWTLIEPLLPPPKPRREKNPGRLPVSNRAALTGILFVLKTGLRWRDLPAEMGCGSGVTCWRRLRDWQAAGVWDRLHELLLAKLRAADQIDF
SRAAVDSSSIRAVGAGQKLGQTPPIARDQVLSTTSSPTPMARRSRRS
SRAAVDSSSIRAVGAGQKLGQTPPIARDQVLSTTSSPTPMARRSRRS
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
462 bp | 154 aa | 441 | 902 | + | No |
Description : Second part of the transposase
ORF sequence :
TGPNPTDRARPGSKHHIVTDANGTPLAAILTGANVHDVTQLLPLIDAIPPIRGLRGHPLQRPRVVYADRGYDSERHRRALRDRGIEPVIAKRRTEHGSGL
GKYRWVVERTHAWLHHFRRLRIRFERRADIHGAFLKLGCCLICWNTLRRADQSL
GKYRWVVERTHAWLHHFRRLRIRFERRADIHGAFLKLGCCLICWNTLRRADQSL
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
815 bp | 273 aa | 88 | 902 | + | Yes |
Chemistry : DDE
ORF sequence :
MAKPIIDDELWTLIEPLLPPPKPRREKNPGRLPVSNRAALTGILFVLKTGLRWRDLPAEMGCGSGVTCWRRLRDWQAAGVWDRLHELLLAKLRAADQIDF
SRAAVDSSSIRAVGAGQKTGPNPTDRARPGSKHHIVTDANGTPLAAILTGANVHDVTQLLPLIDAIPPIRGLRGHPLQRPRVVYADRGYDSERHRRALRD
RGIEPVIAKRRTEHGSGLGKYRWVVERTHAWLHHFRRLRIRFERRADIHGAFLKLGCCLICWNTLRRADQSL
SRAAVDSSSIRAVGAGQKTGPNPTDRARPGSKHHIVTDANGTPLAAILTGANVHDVTQLLPLIDAIPPIRGLRGHPLQRPRVVYADRGYDSERHRRALRD
RGIEPVIAKRRTEHGSGLGKYRWVVERTHAWLHHFRRLRIRFERRADIHGAFLKLGCCLICWNTLRRADQSL
Blast result :
Comments
9 copies on J2315 chromosome. Transposase annotated involving a frameshift, as seen in IS5 family members. The ORF3 is a fusion ORF.
References