ISArch13

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008257 ND Uncultured methanogenic
Uncultured methanogenic archaeon RC-1
DNA section
IS Length : 1313 bp

Ends


IR Length : 21/26

IRL : GGCTCTTCTCCGATTGTCGGGTGAGGAACTGCTAGTTGTAATGGGTGATT
IRR : GGCTCTTCTCCATTTTTAGGATGAGGGTTTCCGGCAGATTGTTAATATTT

Insertion site


Left flankDirect repeatRight flankDR Length
GTCCTAAAAGCTTTAAAAATATCTACTGGTCACCACAGA8

DNA sequence

GGCTCTTCTCCGATTGTCGGGTGAGGAACTGCTAGTTGTAATGGGTGATTTTAAGCCACCGCTTGCCCTTGTAATGTTGGCACAATATCATGGGTAAGCG
GTGTAAATACTCGTTAGTATTCAAGAGCCAGTTTAATTTTAAGGGATTTAAGATTGCTGGTATCAGTCATGATGATGAACGGCTTCTTGTCGAGTTAGAG
AGATCAGGGAGGCCTTCTCTGTGTCCTCGTTGTGGCAGGCGTGTTAAACGTGTTGAGGATGAGTATGTCCGAGTGGTCAGGGACCTGGATTTGGGGTGTC
TGCGTTGTTATGTGCAGTTCCCTCAATACAAGATCTTTTGCCGGTGTGGCCACAGGGGTCATGAGAAACTGGAGTTTGTAAGGGAGTACTCGAGATGCAC
GAAGAGACTGGAAAAGCATGTCTCGGTTCTCTGTAAGCATATGAGCATTAAAGAAGCCGCCCAGGTCGTAGGGTTAGACTGGAAGACTGTGAAGAGTATT
GATAAGAATACGATGAGAGAATCCCTTGTCCCGTTGGATTCCAGTAATCCCCGGGTGATCGGCGTGGATGAGATCGCTTATGAGAAAGGCCATAAATACC
TCACAGTAGTCCGGGATGTTGAAAAGGGCTGTGTTCTCTGGACGGGCATTGGGAGAAAAGAGGTGACACTCGACCTGTTCTTCGCCATTCTAGGATACGA
GAAAAGCATGAACGTTAAAGCGGTGGTCATGGATATGTGGGATCCATATATTGCCAGCGTCCGTAAAAACACGAGGGCGGAGATCGTGTTCGATAAGTTC
CATATCGCTAAGAAAGCAGGGGAATGCATAGACAGTATCCGTAGACGAGAATTCAGGGGTGCAGGCAAAGCTGAACGAAAACACTGGAAGGATAAACGGT
TTCTCATCCTCAGCAGAGAGAAGAACCTCCCCAGTGAAAAGAGGGAGACTCTTCAGGAACTATTGGAGCTGAACCAACCCTTGTACAAGGCATACCTGTT
GAAAGAACAACTCCTGGACATCCTGGACGCCCGATATCAGAACCATGCAATGCTCCGGTTGCAGACATGGAAAGAGAACGTGGAGAGTAGCGGATTGGAG
GAGTTCCAAGCTCTGGTAAGGACATTGGATCGTTACATGTACGGTGTGACCGCCCTCTTCAAACATCATATCACTAATGCCGGTAGCGAAGGTTTCAACA
CCAAGATCAATATCATCAAAAGAAGAAGTTACGGCCTCCAGGACCTGGAGTATTTTATGCTTAAAATATTAACAATCTGCCGGAAACCCTCATCCTAAAA
ATGGAGAAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1209 bp402 aa901298+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MGKRCKYSLVFKSQFNFKGFKIAGISHDDERLLVELERSGRPSLCPRCGRRVKRVEDEYVRVVRDLDLGCLRCYVQFPQYKIFCRCGHRGHEKLEFVREY
SRCTKRLEKHVSVLCKHMSIKEAAQVVGLDWKTVKSIDKNTMRESLVPLDSSNPRVIGVDEIAYEKGHKYLTVVRDVEKGCVLWTGIGRKEVTLDLFFAI
LGYEKSMNVKAVVMDMWDPYIASVRKNTRAEIVFDKFHIAKKAGECIDSIRRREFRGAGKAERKHWKDKRFLILSREKNLPSEKRETLQELLELNQPLYK
AYLLKEQLLDILDARYQNHAMLRLQTWKENVESSGLEEFQALVRTLDRYMYGVTALFKHHITNAGSEGFNTKINIIKRRSYGLQDLEYFMLKILTICRKP
SS

 

Blast result :
Comments
ISArch13 is 73% aa similar to ISArch12. There are 3 complete copies in the genome.
References
1] Erkel,C., Kube,M., Reinhardt,R. and Liesack,W. (2006) Science 313 (5785), 370-372