ISArch13
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008257 | ND | Uncultured methanogenic | Uncultured methanogenic archaeon RC-1 |
DNA section
IS Length : 1313 bp
Ends
IR Length : 21/26
IRL : GGCTCTTCTCCGATTGTCGGGTGAGGAACTGCTAGTTGTAATGGGTGATT
IRR : GGCTCTTCTCCATTTTTAGGATGAGGGTTTCCGGCAGATTGTTAATATTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTCCTAAAAGCTTT | AAAAATAT | CTACTGGTCACCACAGA | 8 |
DNA sequence
GGCTCTTCTCCGATTGTCGGGTGAGGAACTGCTAGTTGTAATGGGTGATTTTAAGCCACCGCTTGCCCTTGTAATGTTGGCACAATATCATGGGTAAGCG
GTGTAAATACTCGTTAGTATTCAAGAGCCAGTTTAATTTTAAGGGATTTAAGATTGCTGGTATCAGTCATGATGATGAACGGCTTCTTGTCGAGTTAGAG
AGATCAGGGAGGCCTTCTCTGTGTCCTCGTTGTGGCAGGCGTGTTAAACGTGTTGAGGATGAGTATGTCCGAGTGGTCAGGGACCTGGATTTGGGGTGTC
TGCGTTGTTATGTGCAGTTCCCTCAATACAAGATCTTTTGCCGGTGTGGCCACAGGGGTCATGAGAAACTGGAGTTTGTAAGGGAGTACTCGAGATGCAC
GAAGAGACTGGAAAAGCATGTCTCGGTTCTCTGTAAGCATATGAGCATTAAAGAAGCCGCCCAGGTCGTAGGGTTAGACTGGAAGACTGTGAAGAGTATT
GATAAGAATACGATGAGAGAATCCCTTGTCCCGTTGGATTCCAGTAATCCCCGGGTGATCGGCGTGGATGAGATCGCTTATGAGAAAGGCCATAAATACC
TCACAGTAGTCCGGGATGTTGAAAAGGGCTGTGTTCTCTGGACGGGCATTGGGAGAAAAGAGGTGACACTCGACCTGTTCTTCGCCATTCTAGGATACGA
GAAAAGCATGAACGTTAAAGCGGTGGTCATGGATATGTGGGATCCATATATTGCCAGCGTCCGTAAAAACACGAGGGCGGAGATCGTGTTCGATAAGTTC
CATATCGCTAAGAAAGCAGGGGAATGCATAGACAGTATCCGTAGACGAGAATTCAGGGGTGCAGGCAAAGCTGAACGAAAACACTGGAAGGATAAACGGT
TTCTCATCCTCAGCAGAGAGAAGAACCTCCCCAGTGAAAAGAGGGAGACTCTTCAGGAACTATTGGAGCTGAACCAACCCTTGTACAAGGCATACCTGTT
GAAAGAACAACTCCTGGACATCCTGGACGCCCGATATCAGAACCATGCAATGCTCCGGTTGCAGACATGGAAAGAGAACGTGGAGAGTAGCGGATTGGAG
GAGTTCCAAGCTCTGGTAAGGACATTGGATCGTTACATGTACGGTGTGACCGCCCTCTTCAAACATCATATCACTAATGCCGGTAGCGAAGGTTTCAACA
CCAAGATCAATATCATCAAAAGAAGAAGTTACGGCCTCCAGGACCTGGAGTATTTTATGCTTAAAATATTAACAATCTGCCGGAAACCCTCATCCTAAAA
ATGGAGAAGAGCC
GTGTAAATACTCGTTAGTATTCAAGAGCCAGTTTAATTTTAAGGGATTTAAGATTGCTGGTATCAGTCATGATGATGAACGGCTTCTTGTCGAGTTAGAG
AGATCAGGGAGGCCTTCTCTGTGTCCTCGTTGTGGCAGGCGTGTTAAACGTGTTGAGGATGAGTATGTCCGAGTGGTCAGGGACCTGGATTTGGGGTGTC
TGCGTTGTTATGTGCAGTTCCCTCAATACAAGATCTTTTGCCGGTGTGGCCACAGGGGTCATGAGAAACTGGAGTTTGTAAGGGAGTACTCGAGATGCAC
GAAGAGACTGGAAAAGCATGTCTCGGTTCTCTGTAAGCATATGAGCATTAAAGAAGCCGCCCAGGTCGTAGGGTTAGACTGGAAGACTGTGAAGAGTATT
GATAAGAATACGATGAGAGAATCCCTTGTCCCGTTGGATTCCAGTAATCCCCGGGTGATCGGCGTGGATGAGATCGCTTATGAGAAAGGCCATAAATACC
TCACAGTAGTCCGGGATGTTGAAAAGGGCTGTGTTCTCTGGACGGGCATTGGGAGAAAAGAGGTGACACTCGACCTGTTCTTCGCCATTCTAGGATACGA
GAAAAGCATGAACGTTAAAGCGGTGGTCATGGATATGTGGGATCCATATATTGCCAGCGTCCGTAAAAACACGAGGGCGGAGATCGTGTTCGATAAGTTC
CATATCGCTAAGAAAGCAGGGGAATGCATAGACAGTATCCGTAGACGAGAATTCAGGGGTGCAGGCAAAGCTGAACGAAAACACTGGAAGGATAAACGGT
TTCTCATCCTCAGCAGAGAGAAGAACCTCCCCAGTGAAAAGAGGGAGACTCTTCAGGAACTATTGGAGCTGAACCAACCCTTGTACAAGGCATACCTGTT
GAAAGAACAACTCCTGGACATCCTGGACGCCCGATATCAGAACCATGCAATGCTCCGGTTGCAGACATGGAAAGAGAACGTGGAGAGTAGCGGATTGGAG
GAGTTCCAAGCTCTGGTAAGGACATTGGATCGTTACATGTACGGTGTGACCGCCCTCTTCAAACATCATATCACTAATGCCGGTAGCGAAGGTTTCAACA
CCAAGATCAATATCATCAAAAGAAGAAGTTACGGCCTCCAGGACCTGGAGTATTTTATGCTTAAAATATTAACAATCTGCCGGAAACCCTCATCCTAAAA
ATGGAGAAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1209 bp | 402 aa | 90 | 1298 | + | No |
Chemistry : Unknow
ORF sequence :
MGKRCKYSLVFKSQFNFKGFKIAGISHDDERLLVELERSGRPSLCPRCGRRVKRVEDEYVRVVRDLDLGCLRCYVQFPQYKIFCRCGHRGHEKLEFVREY
SRCTKRLEKHVSVLCKHMSIKEAAQVVGLDWKTVKSIDKNTMRESLVPLDSSNPRVIGVDEIAYEKGHKYLTVVRDVEKGCVLWTGIGRKEVTLDLFFAI
LGYEKSMNVKAVVMDMWDPYIASVRKNTRAEIVFDKFHIAKKAGECIDSIRRREFRGAGKAERKHWKDKRFLILSREKNLPSEKRETLQELLELNQPLYK
AYLLKEQLLDILDARYQNHAMLRLQTWKENVESSGLEEFQALVRTLDRYMYGVTALFKHHITNAGSEGFNTKINIIKRRSYGLQDLEYFMLKILTICRKP
SS
SRCTKRLEKHVSVLCKHMSIKEAAQVVGLDWKTVKSIDKNTMRESLVPLDSSNPRVIGVDEIAYEKGHKYLTVVRDVEKGCVLWTGIGRKEVTLDLFFAI
LGYEKSMNVKAVVMDMWDPYIASVRKNTRAEIVFDKFHIAKKAGECIDSIRRREFRGAGKAERKHWKDKRFLILSREKNLPSEKRETLQELLELNQPLYK
AYLLKEQLLDILDARYQNHAMLRLQTWKENVESSGLEEFQALVRTLDRYMYGVTALFKHHITNAGSEGFNTKINIIKRRSYGLQDLEYFMLKILTICRKP
SS
Blast result :
Comments
ISArch13 is 73% aa similar to ISArch12. There are 3 complete copies in the genome.
References
1] Erkel,C., Kube,M., Reinhardt,R. and Liesack,W. (2006) Science 313 (5785), 370-372