ISArch12
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008257 | ND | Uncultured methanogenic | Uncultured methanogenic archaeon RC-I |
DNA section
IS Length : 1324 bp
Ends
IR Length : 19/24
IRL : GGCTCTTCTCCAAGGTTGGGATTGAGTCCTGTTGGCTGATCGGTAAGTAG
IRR : GGTTCTTCTCCCTGTTTGGGATCGGGGTTAGAGGCCGCATATTTTTATTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTAATATTGTAATATAA | GTAATAAG | GAAAGAAGTAATA | 8 |
DNA sequence
GGCTCTTCTCCAAGGTTGGGATTGAGTCCTGTTGGCTGATCGGTAAGTAGTAAGGCATCGTTTGCTCTTTTAGTTTTGGCAAACAATCATGAGTAAACGA
TGCAAATACTCGATGGTATTCAGTACCGTGTATAATTTTCCAGGCTTTAAGATTGTTGGTCTGAGCGTGATGACCATGCTGGTTGGCATGGTGGTCATCC
AGCTCGGACGATCGAAGCATAAGGTCCGGTGTCCTTGCTGTAACCGTGTGGTGAAACGTTTTGAAGGCTCGTATGGCCGGCTTGTCCGTCACCTGGACTT
CTCGGGGTTCGAATGCTACCTGTACTTTGAGGAGTACAAATTGCATTGTAAATGTGGGTACCGTGGGTATGAGGATGTGGGTTTCGTAAGGGATTACAGT
AATTGTACAAGGGCGTATGAAGCGTATGTGGGCCGTCTCTGTGATCATATGAGTGTGAAAGAAGCGGCGAGCTTTGTAGGGTTGGACTGGAAGACGGTTA
AGAACATCGATAAAGAATCTATTCGGTCAGCCCTGAAGGGTTTGTCCGAGGTGCATCCTGTCAGGATTGGTGTTGATGAGATCGCTTATCAGAAAGGGCA
TAAATATCTCACGGTCGTCCGTGACGTGGACCATGGTTATGTCCTCTGGGTTGGCCTGGACCGTAAGAAGGAGACTCTGAACGCCTTCTTCCAGGAGCTT
GGACCTGAGAAATGTCAGTTGATCAAGGTGGCAGTTATGGATATGTGGGATCCCTTTATCGCTAGTGTGAAAGAGTACACGAGGGCGGACATCGTCTTCG
ACAAGTTCCATGTCGCTAAAAAGGTGAACGAAGCGTTGGATTCGATACGCCGACACGAGTTCAGGAATGCTGGTAAGGATGAGCAGAAGGAGTTCAAGAA
AAAACGTTTCCTGATCCTCCTGAGAAACGAGAATGTGCCACCTGACCGACGAGAAACCCTCAACAGTCTCCTGGAGAAGAATCAGACCCTGTACAGTGCA
TATGTGCTAAAAGAGCAACTCCTCAGCATCCTGGACGAAAAATGCTACGATGTCGCCATACGACGATTGGAAACCTGGAAGGCCAATGTTCAGGAGTCCG
GCATACAAGAATACGACAAAGTGGTGAAGACCATTAACAATTACCTGTACGGCATCCACAACTACTTCAAACACGGAGTGACGAATGCCGCCAGCGAGGG
GTTCAACAATAAGATCGGGCTCATCAAACGTAGAGCATACGGTTTCCGGGACATCGAATACTTCATGCTAAAAATAATAAAAATATGCGGCCTCTAACCC
CGATCCCAAACAGGGAGAAGAACC
TGCAAATACTCGATGGTATTCAGTACCGTGTATAATTTTCCAGGCTTTAAGATTGTTGGTCTGAGCGTGATGACCATGCTGGTTGGCATGGTGGTCATCC
AGCTCGGACGATCGAAGCATAAGGTCCGGTGTCCTTGCTGTAACCGTGTGGTGAAACGTTTTGAAGGCTCGTATGGCCGGCTTGTCCGTCACCTGGACTT
CTCGGGGTTCGAATGCTACCTGTACTTTGAGGAGTACAAATTGCATTGTAAATGTGGGTACCGTGGGTATGAGGATGTGGGTTTCGTAAGGGATTACAGT
AATTGTACAAGGGCGTATGAAGCGTATGTGGGCCGTCTCTGTGATCATATGAGTGTGAAAGAAGCGGCGAGCTTTGTAGGGTTGGACTGGAAGACGGTTA
AGAACATCGATAAAGAATCTATTCGGTCAGCCCTGAAGGGTTTGTCCGAGGTGCATCCTGTCAGGATTGGTGTTGATGAGATCGCTTATCAGAAAGGGCA
TAAATATCTCACGGTCGTCCGTGACGTGGACCATGGTTATGTCCTCTGGGTTGGCCTGGACCGTAAGAAGGAGACTCTGAACGCCTTCTTCCAGGAGCTT
GGACCTGAGAAATGTCAGTTGATCAAGGTGGCAGTTATGGATATGTGGGATCCCTTTATCGCTAGTGTGAAAGAGTACACGAGGGCGGACATCGTCTTCG
ACAAGTTCCATGTCGCTAAAAAGGTGAACGAAGCGTTGGATTCGATACGCCGACACGAGTTCAGGAATGCTGGTAAGGATGAGCAGAAGGAGTTCAAGAA
AAAACGTTTCCTGATCCTCCTGAGAAACGAGAATGTGCCACCTGACCGACGAGAAACCCTCAACAGTCTCCTGGAGAAGAATCAGACCCTGTACAGTGCA
TATGTGCTAAAAGAGCAACTCCTCAGCATCCTGGACGAAAAATGCTACGATGTCGCCATACGACGATTGGAAACCTGGAAGGCCAATGTTCAGGAGTCCG
GCATACAAGAATACGACAAAGTGGTGAAGACCATTAACAATTACCTGTACGGCATCCACAACTACTTCAAACACGGAGTGACGAATGCCGCCAGCGAGGG
GTTCAACAATAAGATCGGGCTCATCAAACGTAGAGCATACGGTTTCCGGGACATCGAATACTTCATGCTAAAAATAATAAAAATATGCGGCCTCTAACCC
CGATCCCAAACAGGGAGAAGAACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1209 bp | 402 aa | 89 | 1297 | + | No |
Chemistry : Unknow
ORF sequence :
MSKRCKYSMVFSTVYNFPGFKIVGLSVMTMLVGMVVIQLGRSKHKVRCPCCNRVVKRFEGSYGRLVRHLDFSGFECYLYFEEYKLHCKCGYRGYEDVGFV
RDYSNCTRAYEAYVGRLCDHMSVKEAASFVGLDWKTVKNIDKESIRSALKGLSEVHPVRIGVDEIAYQKGHKYLTVVRDVDHGYVLWVGLDRKKETLNAF
FQELGPEKCQLIKVAVMDMWDPFIASVKEYTRADIVFDKFHVAKKVNEALDSIRRHEFRNAGKDEQKEFKKKRFLILLRNENVPPDRRETLNSLLEKNQT
LYSAYVLKEQLLSILDEKCYDVAIRRLETWKANVQESGIQEYDKVVKTINNYLYGIHNYFKHGVTNAASEGFNNKIGLIKRRAYGFRDIEYFMLKIIKIC
GL
RDYSNCTRAYEAYVGRLCDHMSVKEAASFVGLDWKTVKNIDKESIRSALKGLSEVHPVRIGVDEIAYQKGHKYLTVVRDVDHGYVLWVGLDRKKETLNAF
FQELGPEKCQLIKVAVMDMWDPFIASVKEYTRADIVFDKFHVAKKVNEALDSIRRHEFRNAGKDEQKEFKKKRFLILLRNENVPPDRRETLNSLLEKNQT
LYSAYVLKEQLLSILDEKCYDVAIRRLETWKANVQESGIQEYDKVVKTINNYLYGIHNYFKHGVTNAASEGFNNKIGLIKRRAYGFRDIEYFMLKIIKIC
GL
Blast result :
Comments
ISArch12 is 49% aa similar to ISBma1.
References
1] Erkel,C., Kube,M., Reinhardt,R. and Liesack,W. (2006) Science 313 (5785), 370-372