ISArch12

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008257 ND Uncultured methanogenic
Uncultured methanogenic archaeon RC-I
DNA section
IS Length : 1324 bp

Ends


IR Length : 19/24

IRL : GGCTCTTCTCCAAGGTTGGGATTGAGTCCTGTTGGCTGATCGGTAAGTAG
IRR : GGTTCTTCTCCCTGTTTGGGATCGGGGTTAGAGGCCGCATATTTTTATTA

Insertion site


Left flankDirect repeatRight flankDR Length
TTAATATTGTAATATAAGTAATAAGGAAAGAAGTAATA8

DNA sequence

GGCTCTTCTCCAAGGTTGGGATTGAGTCCTGTTGGCTGATCGGTAAGTAGTAAGGCATCGTTTGCTCTTTTAGTTTTGGCAAACAATCATGAGTAAACGA
TGCAAATACTCGATGGTATTCAGTACCGTGTATAATTTTCCAGGCTTTAAGATTGTTGGTCTGAGCGTGATGACCATGCTGGTTGGCATGGTGGTCATCC
AGCTCGGACGATCGAAGCATAAGGTCCGGTGTCCTTGCTGTAACCGTGTGGTGAAACGTTTTGAAGGCTCGTATGGCCGGCTTGTCCGTCACCTGGACTT
CTCGGGGTTCGAATGCTACCTGTACTTTGAGGAGTACAAATTGCATTGTAAATGTGGGTACCGTGGGTATGAGGATGTGGGTTTCGTAAGGGATTACAGT
AATTGTACAAGGGCGTATGAAGCGTATGTGGGCCGTCTCTGTGATCATATGAGTGTGAAAGAAGCGGCGAGCTTTGTAGGGTTGGACTGGAAGACGGTTA
AGAACATCGATAAAGAATCTATTCGGTCAGCCCTGAAGGGTTTGTCCGAGGTGCATCCTGTCAGGATTGGTGTTGATGAGATCGCTTATCAGAAAGGGCA
TAAATATCTCACGGTCGTCCGTGACGTGGACCATGGTTATGTCCTCTGGGTTGGCCTGGACCGTAAGAAGGAGACTCTGAACGCCTTCTTCCAGGAGCTT
GGACCTGAGAAATGTCAGTTGATCAAGGTGGCAGTTATGGATATGTGGGATCCCTTTATCGCTAGTGTGAAAGAGTACACGAGGGCGGACATCGTCTTCG
ACAAGTTCCATGTCGCTAAAAAGGTGAACGAAGCGTTGGATTCGATACGCCGACACGAGTTCAGGAATGCTGGTAAGGATGAGCAGAAGGAGTTCAAGAA
AAAACGTTTCCTGATCCTCCTGAGAAACGAGAATGTGCCACCTGACCGACGAGAAACCCTCAACAGTCTCCTGGAGAAGAATCAGACCCTGTACAGTGCA
TATGTGCTAAAAGAGCAACTCCTCAGCATCCTGGACGAAAAATGCTACGATGTCGCCATACGACGATTGGAAACCTGGAAGGCCAATGTTCAGGAGTCCG
GCATACAAGAATACGACAAAGTGGTGAAGACCATTAACAATTACCTGTACGGCATCCACAACTACTTCAAACACGGAGTGACGAATGCCGCCAGCGAGGG
GTTCAACAATAAGATCGGGCTCATCAAACGTAGAGCATACGGTTTCCGGGACATCGAATACTTCATGCTAAAAATAATAAAAATATGCGGCCTCTAACCC
CGATCCCAAACAGGGAGAAGAACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1209 bp402 aa891297+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MSKRCKYSMVFSTVYNFPGFKIVGLSVMTMLVGMVVIQLGRSKHKVRCPCCNRVVKRFEGSYGRLVRHLDFSGFECYLYFEEYKLHCKCGYRGYEDVGFV
RDYSNCTRAYEAYVGRLCDHMSVKEAASFVGLDWKTVKNIDKESIRSALKGLSEVHPVRIGVDEIAYQKGHKYLTVVRDVDHGYVLWVGLDRKKETLNAF
FQELGPEKCQLIKVAVMDMWDPFIASVKEYTRADIVFDKFHVAKKVNEALDSIRRHEFRNAGKDEQKEFKKKRFLILLRNENVPPDRRETLNSLLEKNQT
LYSAYVLKEQLLSILDEKCYDVAIRRLETWKANVQESGIQEYDKVVKTINNYLYGIHNYFKHGVTNAASEGFNNKIGLIKRRAYGFRDIEYFMLKIIKIC
GL

 

Blast result :
Comments
ISArch12 is 49% aa similar to ISBma1.
References
1] Erkel,C., Kube,M., Reinhardt,R. and Liesack,W. (2006) Science 313 (5785), 370-372