ISC1904

  • Family IS607
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s) ISC1778
Accession numberTranspositionOriginHost
NC_002754 ND Sulfolobus solfataricus
Sulfolobus solfataricus P2
DNA section
IS Length : 1903 bp

Ends


IR Length : 0

IRL : GCCGTTGCCAACAGTTTCAGATAAACCGTAAAGTTTATATTATTTTGCCA
IRR : GGGTTTGGGCTTCATGGGATTTCATGATATTTAATATCAATCCTCAGCCC

Insertion site


Left flankDirect repeatRight flankDR Length
GGCCATATCACAATTTAGG0

DNA sequence

GCCGTTGCCAACAGTTTCAGATAAACCGTAAAGTTTATATTATTTTGCCACAAACTCTTATACAATGCTAAGATCAAAGGAAGCATGCCAAAGACTAGGA
ATATCCTATGCAACACTTAGAGAATACGTTAAGAAAGGATACATAAAACCAGTTATACTACAGAGCGGAAAATGGAGATTCAGAGAAGAAGACGTAGAGA
GGCTAATGGGAATTATTAGAAAAAGAAAAGTAATACTTTACGCCAGAGTATCATCTTCCACACAAAAAGACGATCTGGCAAACCAAGTGAAATATCTAGA
GGAACAAGTCAAAGAATACGACCAAGTAATCACAGACATAGGTTCCGGGTTAAACATGAAGAGAAAGGGGTTCTTGAAGTTGTTGAGAATGATATTAAAT
AACGAAGTATCACGCGTAGTTATTGCTTACCCAGACAGACTTGTTAGATTCGGCTTCGAAATCCTGGAGGAAGTGTGCAAAGCACATGGCTGTGAAATAG
TAGTAATAAACCAAGAGGACAAAGAAGAAGAATTGGTCGAAGACTTAGTCTCAATACTACTCTCATTCAGTGGGAAACTACATGGCATGAGAAGTCATAA
ATACGAGAAGGTGAAGAAATGTGCTGAAGAACTTAAGGCTTAAGTCATTCCAACCAGAGGAAGAGTACGTGCACTTCACGTACTCCATCAAGAACGACAA
GAGGGAGGAGAGCAAAGAATTAATTAAAGAATACACAACACTACTACAGAAAGCAATTGACTACCTGTGGAGTTTAACGAAAATACAAGTAAGAAAGAAC
GGTAATTACAAGATAACACTACCGAAGAAGAAGGAGGTGTACAAACCACTTAGGGATGAACTAGAGAAGATCAACCACCTTGCATCACACTACGTCGATA
AGGCAATTAATGACGCATTCTCGATCTTGAAGTCGTGGAGGAAAAGGGCTATAAAGGGGAGAGCTTCGATTGAAAAACCAAGGGTGAAGAAGGCTTACGT
TAGGATAAAGACGACTCTGAGGAAGGTTGTGGGGGAAAGCGTTAGAATAACGGTAAGACCTTATGAGTACATCACCTTCTCGTGGAGTAAGTCATGGTTC
TCAAGAAGGGTTAGGGAGTTGGAACTTGGTGAACCTATAATTAAGGAGGAGAAAGTGTATTTGCCATTTCGTTACAAGTTACCCTGGGCAACACCATTAA
ACTTTCTGGCAATTGACTCCAACCTTTATACTCTAGATGCTTATGATGGTGAGAAATTCGTTACAATCTCACTAAAGCAGTTGTACTCCCTTAAGTACTC
TATGGAGGTGAAGAGGGCTAAGGTGCAATCATTTGCATCAAAGCACACGAAGAGGGGGAGAGAGTTGTTAAGGAAGTATTCGCATAGGGAGAGGAATCGC
GTTCTGGACTTCGTTCACAAGTTTGTAAACGCGTTGTTGGACTTGTACCCCATGACGTTTTTCGCTGTGGAAAAGCTTAACAAAGAGAGTATGTTTGTAG
ACGCTAATGACTCTCTTTCGAGGAAGATTTCTAGGACTGTTTGGAGGAGTATACACAGAGTGTTGAAGTATAAGGCTCCGCTTTACGGTTCTTTCGTTAA
GGAAGTGAACCCACGCTTTACATCTAGGTCTTGCCCCAGATGTGGGTTTGTATCCCGAAAGGTTGGTAAGACCTTTGAGTGTGAGAGGTGTGGGTTTAAG
TTGGATAGGCAATTGAACGCGTCACTGAATATTTATCTCAAGATGTGCGGATTCCCTCACATCCGTGATATAGCACGGGTGTGGGTTGGGGTTATTCCGC
TAATGGGGCGAAGAGGGATGAACGGGTTTCCCCGTGACTTTGGTGAAGCCCAAGGGCTGAGGATTGATATTAAATATCATGAAATCCCATGAAGCCCAAA
CCC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
579 bp192 aa65643+No
ORF function : Transposase
Chemistry : Serine

ORF sequence :

MLRSKEACQRLGISYATLREYVKKGYIKPVILQSGKWRFREEDVERLMGIIRKRKVILYARVSSSTQKDDLANQVKYLEEQVKEYDQVITDIGSGLNMKR
KGFLKLLRMILNNEVSRVVIAYPDRLVRFGFEILEEVCKAHGCEIVVINQEDKEEELVEDLVSILLSFSGKLHGMRSHKYEKVKKCAEELKA

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1272 bp423 aa6211892+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MLKNLRLKSFQPEEEYVHFTYSIKNDKREESKELIKEYTTLLQKAIDYLWSLTKIQVRKNGNYKITLPKKKEVYKPLRDELEKINHLASHYVDKAINDAF
SILKSWRKRAIKGRASIEKPRVKKAYVRIKTTLRKVVGESVRITVRPYEYITFSWSKSWFSRRVRELELGEPIIKEEKVYLPFRYKLPWATPLNFLAIDS
NLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFASKHTKRGRELLRKYSHRERNRVLDFVHKFVNALLDLYPMTFFAVEKLNKESMFVDANDSLS
RKISRTVWRSIHRVLKYKAPLYGSFVKEVNPRFTSRSCPRCGFVSRKVGKTFECERCGFKLDRQLNASLNIYLKMCGFPHIRDIARVWVGVIPLMGRRGM
NGFPRDFGEAQGLRIDIKYHEIP

 

Blast result :
Comments
ISC1904 is 92% (ORF1) and 86% (ORF2) aa similar to IS1921.
References
1] She,Q., Singh,R.K., Confalonieri,F., Zivanovic,Y., Allard,G., Awayez,M.J., Chan-Weiher,C.C., Clausen,I.G., Curtis,B.A., De Moors,A., Erauso,G., Fletcher,C., Gordon,P.M., Heikamp-de Jong,I., Jeffries,A.C., Kozera,C.J., Medina,N., Peng,X., Thi-Ngoc,H.P., Redder,P., Schenk,M.E., Theriault,C., Tolstrup,N., Charlebois,R.L., Doolittle,W.F., Duguet,M., Gaasterland,T., Garrett,R.A., Ragan,M.A., Sensen,C.W. and Van der Oost,J. (2001) Proc. Natl. Acad. Sci. U.S.A. 98 (14), 7835-7840