ISC1913
- Family IS607
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_002754 | ND | Sulfolobus solfataricus | Sulfolobus solfataricus P2 |
DNA section
IS Length : 1913 bp
Ends
IR Length : 0
IRL : GGGCTGAATCCTTTCTCACGTTAATAGAAATCTTTTTATATTTATTTATT
IRR : CCGTTTGTCCCTACACTTTCATTTCAATCATTTTATGATCATTCATGATC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAATATGTTTTATATAA | GTTATTGTTCGTGTTTAGGA | 0 |
DNA sequence
GGGCTGAATCCTTTCTCACGTTAATAGAAATCTTTTTATATTTATTTATTATCAACCAATTTTGTGGAGAGACTACTGAGACCTAAGGAGGCTTGCCAAC
TACTCGGCATTTCATACTCAACACTCCTACGGTGGATTAGAGAAGGAAAAATAAGGGTAGTAACGACTGAAGGAGGGAAGTATAGGATACCTTACAGCGA
GATTAAGAAGTACTTAGAGAAGAGGGAGGAAACAAGAGCTGTAATTTATGCAAGGGTCTCCTCTACCGATCAGAGAGAAGACTTGGAAAGACAAATAAAC
TACCTAACGAACTACGCAACGGCAAAGGGTTACAAGGTAGTTGAAGTACTGAAAGATATAGCTAGCGGGTTGAACACACAAAGGAAAGGATTGCTTAAGT
TATTCAAACTTGTTGAGGGGAGGAGTGTCGACATCGTATTAATAACATACAAAGACAGACTTACAAGATTTGGATTTGAGTACATTGAGGAGTTCTTCTC
AACCATGGGAGTTAAGATTGAAGTAGTTTTTGGTGAGGAGCCCAAAGATGACGCACAAGAGCTAGTTGAGGACTTAATCTCAATCATTACCTCATTCGCT
GGGAAAATTTACGGTATGAGGAGTCACAAGAAAACACTCCTAGTTCAAGGTGTAAAAAAGTTGATAGGTGAGTTAAGTGGAGAGGACAGTGAAGTTAAGG
GTTAAGGTTGATTATAAAACTTACTCAGCACTTAAGGAGGTCGAGAAGGAGTACAGAGAGGTTCTAGAGGAGGCAATAAATTATGGGCTGTCAAACAAAA
CTACCTCCTTCACCAGGATTAAAGCGGGAGTTTACAAGACTGAGAGGGAGAAGCATAAGGACTTACCCTCCCATTATATTTACACAGCTTGTGAGGATGC
AAGCGAGAGATTAGACAGTTTTGAGAAGTTGAAGAGGAGAGGGAGGAGTTACACTGAGAAACCGTCAGTGAGGAGAGTTACTATTCACCTCGACGATCAT
CTGTGGAAGTTCAACCTTGATAGGATTTCAATTTCCACAAAGAGGAGTAGGATTCTCATTTCACCAACCTTCCCTAAGATCTTCTGGAGATATTATAACA
AGGGCTGGAGGATTGCGAGTGAGGCCAGGTTTAAATTGTTGAAGGGGAATGTTGTAGAGTTCTACGTCATTTTTAAGAGAGATGAGCCTAAACCTTATGA
ACCTAAGGGTTTCATCTCAGTTGATCTAAATGAGAATTCAGTCTCTGTATTAGTTGATGGAAAACCGATGCTTTTAGAGACTAACACTAAGAGGATTACT
CTGGGCTATGAGTATAGGAGGAAGGCAATAACTACTGGTAAGTCAACTAAGGATAGGGAAGTGAGGAGGAAGTTAAAGAGGCTGAGGGAGAGGAATAAGA
AAGTAGACATTAGGAGGAAATTAGCTAAGCTGATCGTTAAAGAGGCTTTTGAAAGTAGGAGTGTCATAGTTTTAGAGGACTTGCCAAGGAGAACTCCGGA
GCATATGATAAAGGACGTGAAAGACTCTCAGCTTAGGTTGAGGATTTATAGAGCAGCATTTTCCTCAATGAAGAATGCTATTATTGAGAAGGCTAGGGAG
TTTGGTGTCCCCGTGGTCTTAGTTAATCCGTCTCACACTTCCACTGTTTGCCCAGTTCATGGAACTAAGATCGTTTACCAACTCGATGGGGGCGATGCCC
CAAGGGTTGGTGTTTGTGAGAAGGGGAAGGAAAAGTGGCATAGGGATGTAGTTGCACTGTACAACTTAGCGAGGAGAGCTGGAGATGTGAGCCCCGTGCC
GTTGGGCTCGAAGGAGTCCCATGACCCACCTAAAAGGTGGTTGAGGGCTAAGTCCCTACACTCGATCATGAATGATCATAAAATGATTGAAATGAAAGTG
TAGGGACAAACGG
TACTCGGCATTTCATACTCAACACTCCTACGGTGGATTAGAGAAGGAAAAATAAGGGTAGTAACGACTGAAGGAGGGAAGTATAGGATACCTTACAGCGA
GATTAAGAAGTACTTAGAGAAGAGGGAGGAAACAAGAGCTGTAATTTATGCAAGGGTCTCCTCTACCGATCAGAGAGAAGACTTGGAAAGACAAATAAAC
TACCTAACGAACTACGCAACGGCAAAGGGTTACAAGGTAGTTGAAGTACTGAAAGATATAGCTAGCGGGTTGAACACACAAAGGAAAGGATTGCTTAAGT
TATTCAAACTTGTTGAGGGGAGGAGTGTCGACATCGTATTAATAACATACAAAGACAGACTTACAAGATTTGGATTTGAGTACATTGAGGAGTTCTTCTC
AACCATGGGAGTTAAGATTGAAGTAGTTTTTGGTGAGGAGCCCAAAGATGACGCACAAGAGCTAGTTGAGGACTTAATCTCAATCATTACCTCATTCGCT
GGGAAAATTTACGGTATGAGGAGTCACAAGAAAACACTCCTAGTTCAAGGTGTAAAAAAGTTGATAGGTGAGTTAAGTGGAGAGGACAGTGAAGTTAAGG
GTTAAGGTTGATTATAAAACTTACTCAGCACTTAAGGAGGTCGAGAAGGAGTACAGAGAGGTTCTAGAGGAGGCAATAAATTATGGGCTGTCAAACAAAA
CTACCTCCTTCACCAGGATTAAAGCGGGAGTTTACAAGACTGAGAGGGAGAAGCATAAGGACTTACCCTCCCATTATATTTACACAGCTTGTGAGGATGC
AAGCGAGAGATTAGACAGTTTTGAGAAGTTGAAGAGGAGAGGGAGGAGTTACACTGAGAAACCGTCAGTGAGGAGAGTTACTATTCACCTCGACGATCAT
CTGTGGAAGTTCAACCTTGATAGGATTTCAATTTCCACAAAGAGGAGTAGGATTCTCATTTCACCAACCTTCCCTAAGATCTTCTGGAGATATTATAACA
AGGGCTGGAGGATTGCGAGTGAGGCCAGGTTTAAATTGTTGAAGGGGAATGTTGTAGAGTTCTACGTCATTTTTAAGAGAGATGAGCCTAAACCTTATGA
ACCTAAGGGTTTCATCTCAGTTGATCTAAATGAGAATTCAGTCTCTGTATTAGTTGATGGAAAACCGATGCTTTTAGAGACTAACACTAAGAGGATTACT
CTGGGCTATGAGTATAGGAGGAAGGCAATAACTACTGGTAAGTCAACTAAGGATAGGGAAGTGAGGAGGAAGTTAAAGAGGCTGAGGGAGAGGAATAAGA
AAGTAGACATTAGGAGGAAATTAGCTAAGCTGATCGTTAAAGAGGCTTTTGAAAGTAGGAGTGTCATAGTTTTAGAGGACTTGCCAAGGAGAACTCCGGA
GCATATGATAAAGGACGTGAAAGACTCTCAGCTTAGGTTGAGGATTTATAGAGCAGCATTTTCCTCAATGAAGAATGCTATTATTGAGAAGGCTAGGGAG
TTTGGTGTCCCCGTGGTCTTAGTTAATCCGTCTCACACTTCCACTGTTTGCCCAGTTCATGGAACTAAGATCGTTTACCAACTCGATGGGGGCGATGCCC
CAAGGGTTGGTGTTTGTGAGAAGGGGAAGGAAAAGTGGCATAGGGATGTAGTTGCACTGTACAACTTAGCGAGGAGAGCTGGAGATGTGAGCCCCGTGCC
GTTGGGCTCGAAGGAGTCCCATGACCCACCTAAAAGGTGGTTGAGGGCTAAGTCCCTACACTCGATCATGAATGATCATAAAATGATTGAAATGAAAGTG
TAGGGACAAACGG
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
642 bp | 213 aa | 64 | 705 | + | No |
Chemistry : Serine
ORF sequence :
MERLLRPKEACQLLGISYSTLLRWIREGKIRVVTTEGGKYRIPYSEIKKYLEKREETRAVIYARVSSTDQREDLERQINYLTNYATAKGYKVVEVLKDIA
SGLNTQRKGLLKLFKLVEGRSVDIVLITYKDRLTRFGFEYIEEFFSTMGVKIEVVFGEEPKDDAQELVEDLISIITSFAGKIYGMRSHKKTLLVQGVKKL
IGELSGEDSEVKG
SGLNTQRKGLLKLFKLVEGRSVDIVLITYKDRLTRFGFEYIEEFFSTMGVKIEVVFGEEPKDDAQELVEDLISIITSFAGKIYGMRSHKKTLLVQGVKKL
IGELSGEDSEVKG
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1227 bp | 408 aa | 677 | 1903 | + | No |
AG : TnpB
ORF sequence :
MERTVKLRVKVDYKTYSALKEVEKEYREVLEEAINYGLSNKTTSFTRIKAGVYKTEREKHKDLPSHYIYTACEDASERLDSFEKLKRRGRSYTEKPSVRR
VTIHLDDHLWKFNLDRISISTKRSRILISPTFPKIFWRYYNKGWRIASEARFKLLKGNVVEFYVIFKRDEPKPYEPKGFISVDLNENSVSVLVDGKPMLL
ETNTKRITLGYEYRRKAITTGKSTKDREVRRKLKRLRERNKKVDIRRKLAKLIVKEAFESRSVIVLEDLPRRTPEHMIKDVKDSQLRLRIYRAAFSSMKN
AIIEKAREFGVPVVLVNPSHTSTVCPVHGTKIVYQLDGGDAPRVGVCEKGKEKWHRDVVALYNLARRAGDVSPVPLGSKESHDPPKRWLRAKSLHSIMND
HKMIEMKV
VTIHLDDHLWKFNLDRISISTKRSRILISPTFPKIFWRYYNKGWRIASEARFKLLKGNVVEFYVIFKRDEPKPYEPKGFISVDLNENSVSVLVDGKPMLL
ETNTKRITLGYEYRRKAITTGKSTKDREVRRKLKRLRERNKKVDIRRKLAKLIVKEAFESRSVIVLEDLPRRTPEHMIKDVKDSQLRLRIYRAAFSSMKN
AIIEKAREFGVPVVLVNPSHTSTVCPVHGTKIVYQLDGGDAPRVGVCEKGKEKWHRDVVALYNLARRAGDVSPVPLGSKESHDPPKRWLRAKSLHSIMND
HKMIEMKV
Blast result :
Comments
ISC1913 is 94% (ORF1) and 90% (ORF2) aa similar to ISSto13.
References
1] She,Q., Singh,R.K., Confalonieri,F., Zivanovic,Y., Allard,G., Awayez,M.J., Chan-Weiher,C.C., Clausen,I.G., Curtis,B.A., De Moors,A., Erauso,G., Fletcher,C., Gordon,P.M., Heikamp-de Jong,I., Jeffries,A.C., Kozera,C.J., Medina,N., Peng,X., Thi-Ngoc,H.P., Redder,P., Schenk,M.E., Theriault,C., Tolstrup,N., Charlebois,R.L., Doolittle,W.F., Duguet,M., Gaasterland,T., Garrett,R.A., Ragan,M.A., Sensen,C.W. and Van der Oost,J. (2001) Proc. Natl. Acad. Sci. U.S.A. 98 (14), 7835-7840