ISC1913

  • Family IS607
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_002754 ND Sulfolobus solfataricus
Sulfolobus solfataricus P2
DNA section
IS Length : 1913 bp

Ends


IR Length : 0

IRL : GGGCTGAATCCTTTCTCACGTTAATAGAAATCTTTTTATATTTATTTATT
IRR : CCGTTTGTCCCTACACTTTCATTTCAATCATTTTATGATCATTCATGATC

Insertion site


Left flankDirect repeatRight flankDR Length
TAATATGTTTTATATAAGTTATTGTTCGTGTTTAGGA0

DNA sequence

GGGCTGAATCCTTTCTCACGTTAATAGAAATCTTTTTATATTTATTTATTATCAACCAATTTTGTGGAGAGACTACTGAGACCTAAGGAGGCTTGCCAAC
TACTCGGCATTTCATACTCAACACTCCTACGGTGGATTAGAGAAGGAAAAATAAGGGTAGTAACGACTGAAGGAGGGAAGTATAGGATACCTTACAGCGA
GATTAAGAAGTACTTAGAGAAGAGGGAGGAAACAAGAGCTGTAATTTATGCAAGGGTCTCCTCTACCGATCAGAGAGAAGACTTGGAAAGACAAATAAAC
TACCTAACGAACTACGCAACGGCAAAGGGTTACAAGGTAGTTGAAGTACTGAAAGATATAGCTAGCGGGTTGAACACACAAAGGAAAGGATTGCTTAAGT
TATTCAAACTTGTTGAGGGGAGGAGTGTCGACATCGTATTAATAACATACAAAGACAGACTTACAAGATTTGGATTTGAGTACATTGAGGAGTTCTTCTC
AACCATGGGAGTTAAGATTGAAGTAGTTTTTGGTGAGGAGCCCAAAGATGACGCACAAGAGCTAGTTGAGGACTTAATCTCAATCATTACCTCATTCGCT
GGGAAAATTTACGGTATGAGGAGTCACAAGAAAACACTCCTAGTTCAAGGTGTAAAAAAGTTGATAGGTGAGTTAAGTGGAGAGGACAGTGAAGTTAAGG
GTTAAGGTTGATTATAAAACTTACTCAGCACTTAAGGAGGTCGAGAAGGAGTACAGAGAGGTTCTAGAGGAGGCAATAAATTATGGGCTGTCAAACAAAA
CTACCTCCTTCACCAGGATTAAAGCGGGAGTTTACAAGACTGAGAGGGAGAAGCATAAGGACTTACCCTCCCATTATATTTACACAGCTTGTGAGGATGC
AAGCGAGAGATTAGACAGTTTTGAGAAGTTGAAGAGGAGAGGGAGGAGTTACACTGAGAAACCGTCAGTGAGGAGAGTTACTATTCACCTCGACGATCAT
CTGTGGAAGTTCAACCTTGATAGGATTTCAATTTCCACAAAGAGGAGTAGGATTCTCATTTCACCAACCTTCCCTAAGATCTTCTGGAGATATTATAACA
AGGGCTGGAGGATTGCGAGTGAGGCCAGGTTTAAATTGTTGAAGGGGAATGTTGTAGAGTTCTACGTCATTTTTAAGAGAGATGAGCCTAAACCTTATGA
ACCTAAGGGTTTCATCTCAGTTGATCTAAATGAGAATTCAGTCTCTGTATTAGTTGATGGAAAACCGATGCTTTTAGAGACTAACACTAAGAGGATTACT
CTGGGCTATGAGTATAGGAGGAAGGCAATAACTACTGGTAAGTCAACTAAGGATAGGGAAGTGAGGAGGAAGTTAAAGAGGCTGAGGGAGAGGAATAAGA
AAGTAGACATTAGGAGGAAATTAGCTAAGCTGATCGTTAAAGAGGCTTTTGAAAGTAGGAGTGTCATAGTTTTAGAGGACTTGCCAAGGAGAACTCCGGA
GCATATGATAAAGGACGTGAAAGACTCTCAGCTTAGGTTGAGGATTTATAGAGCAGCATTTTCCTCAATGAAGAATGCTATTATTGAGAAGGCTAGGGAG
TTTGGTGTCCCCGTGGTCTTAGTTAATCCGTCTCACACTTCCACTGTTTGCCCAGTTCATGGAACTAAGATCGTTTACCAACTCGATGGGGGCGATGCCC
CAAGGGTTGGTGTTTGTGAGAAGGGGAAGGAAAAGTGGCATAGGGATGTAGTTGCACTGTACAACTTAGCGAGGAGAGCTGGAGATGTGAGCCCCGTGCC
GTTGGGCTCGAAGGAGTCCCATGACCCACCTAAAAGGTGGTTGAGGGCTAAGTCCCTACACTCGATCATGAATGATCATAAAATGATTGAAATGAAAGTG
TAGGGACAAACGG
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
642 bp213 aa64705+No
ORF function : Transposase
Chemistry : Serine

ORF sequence :

MERLLRPKEACQLLGISYSTLLRWIREGKIRVVTTEGGKYRIPYSEIKKYLEKREETRAVIYARVSSTDQREDLERQINYLTNYATAKGYKVVEVLKDIA
SGLNTQRKGLLKLFKLVEGRSVDIVLITYKDRLTRFGFEYIEEFFSTMGVKIEVVFGEEPKDDAQELVEDLISIITSFAGKIYGMRSHKKTLLVQGVKKL
IGELSGEDSEVKG

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1227 bp408 aa6771903+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MERTVKLRVKVDYKTYSALKEVEKEYREVLEEAINYGLSNKTTSFTRIKAGVYKTEREKHKDLPSHYIYTACEDASERLDSFEKLKRRGRSYTEKPSVRR
VTIHLDDHLWKFNLDRISISTKRSRILISPTFPKIFWRYYNKGWRIASEARFKLLKGNVVEFYVIFKRDEPKPYEPKGFISVDLNENSVSVLVDGKPMLL
ETNTKRITLGYEYRRKAITTGKSTKDREVRRKLKRLRERNKKVDIRRKLAKLIVKEAFESRSVIVLEDLPRRTPEHMIKDVKDSQLRLRIYRAAFSSMKN
AIIEKAREFGVPVVLVNPSHTSTVCPVHGTKIVYQLDGGDAPRVGVCEKGKEKWHRDVVALYNLARRAGDVSPVPLGSKESHDPPKRWLRAKSLHSIMND
HKMIEMKV

 

Blast result :
Comments
ISC1913 is 94% (ORF1) and 90% (ORF2) aa similar to ISSto13.
References
1] She,Q., Singh,R.K., Confalonieri,F., Zivanovic,Y., Allard,G., Awayez,M.J., Chan-Weiher,C.C., Clausen,I.G., Curtis,B.A., De Moors,A., Erauso,G., Fletcher,C., Gordon,P.M., Heikamp-de Jong,I., Jeffries,A.C., Kozera,C.J., Medina,N., Peng,X., Thi-Ngoc,H.P., Redder,P., Schenk,M.E., Theriault,C., Tolstrup,N., Charlebois,R.L., Doolittle,W.F., Duguet,M., Gaasterland,T., Garrett,R.A., Ragan,M.A., Sensen,C.W. and Van der Oost,J. (2001) Proc. Natl. Acad. Sci. U.S.A. 98 (14), 7835-7840