ISBf7

  • Family IS1380
  • Group IS942
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY372695 ND Bacteroides fragilis
Bacteroides fragilis
DNA section
IS Length : 1595 bp

Ends


IR Length : 12/14

IRL : CCTTAATTCCGCAATTTAGTTAATAATTATTTATTACAAGTACCTGAGCA
IRR : CCTCAAATCCGCAACCGTCTTCATTGAGTGATTATAGCATGATGTAAATG

Insertion site


Left flankDirect repeatRight flankDR Length
TATCCTGTTTTTTTTCTTTCTTTTATGCTCTC5

DNA sequence

CCTTAATTCCGCAATTTAGTTAATAATTATTTATTACAAGTACCTGAGCAACAAAATGTTGCTCAGGATTTTGTCATGTCAGATTTTTCACCTATCTTAG
TGCTACCAATCAAAAAACAAATAAAAAATCGTAAAAGACATGGCAAAAGTACAAATAAAATCTGAGAAACTCACACCTTTTGGCGGTGTTTTTTCTATGA
TGGAGCAATTTGACTCCATGTTATCATCCGTAATCAACTCGACACTTGGATTGAGATGCAGGCTTTATGGCTACCAGTACAGCGAAATCATCCGTTCACT
CATGAGTGTCTACTTCTGTGGCGGTTCCTGCATAGAGGATGTCACTACCCATCTGATGAAACACCTCTCCCTCCATCCGACACTCCGTACATGCAGTGCA
GACACTATTCTCAGGGCGATAAAGGAACTGGCCGAGGATAACATCACATACACATCTGACGCTGGCAAGACTTACGACTTCAATGCAGCAGAGAAACTGA
ACGCCCTGCTTGTAAATGCCTTGTTCGCTATGGGGAAGCTGAAAGAAGGCGGACTTTACGACGTTGACTTCGACCACCAGTTCATAGAGACGGAAAAGTA
CGATGCAAAGCCTACCTACAAGAAATTTTCCGGCTACAGGCCAGGTGTGGCAGTCATCGGTGATATGATTGTCGGAATAGAGAACAGTGACGGCAATACC
AACGTGCGTTTTCATCAGAAGGACACACTGCACAGATTCTTCGGCAGGCTCGAAGCGAGGCGGATTGCCATTAACCGTTTCAGGGCGGATTGTGGTTCAT
GCTCAGAAGACATCGTGAATGAGGTCGGGAGGCATTGTAAGCTTTTCTATATCCGCGCCAACCGCTGCAGTTCGATTTATGATGACATCTTTGCTCTTTC
CGGATGGAAGATGGAAGAGATTAACGGGATAGAGTACGAACTGAATTCAATTCTCGTTGACAAATGGAAAGGGAAGGCGTACCGTCTTGTCATCCAGAGA
CAAAAGCGGATGGATGGAGTGCAGGATATATGGGAAGGCGAGTACACATACCGTTGTATTCTTACCAATGATTACAGGTCATCGGTAAGGGAAATCGTTG
AATTCTACAACTTGCGTGGAGGAAAGGAGCGTATCTTCGATGACATGAACAACGGTTTCGGATGGAAAAGGCTCCCCAAATCATTTATGGCTGAGAATAC
CGTGTTCCTTCTTCTCACTGCACTTATACATAATTTCTACAAGGCCATTATGCAGAAACTGGACGTGAGGAAGTTCGGACTCAAGACAACCAGCCGCATC
AGGACTTTTGTATTCAAGTTTATATCTGTACCTGCAAAATGGATTAGAACATCAAGGCGGTATCTGCTGAACATTTACACCGGCAATAATGCCTACGCAG
AATTGTTCCAGACAGGCCATGGATGATTCCTGTCATTTGCCGGACTTTAAAGCGTATTGCCTCAAGTCGCATTGTGGGGTAAGGGGATAGCGTGCACCAC
GATGATGATTCATGGTACACGCCAGCCAGATACACTACAAATCGGCATTTACATCATGCTATAATCACTCAATGAAGACGGTTGCGGATTTGAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1287 bp428 aa1401426+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAKVQIKSEKLTPFGGVFSMMEQFDSMLSSVINSTLGLRCRLYGYQYSEIIRSLMSVYFCGGSCIEDVTTHLMKHLSLHPTLRTCSADTILRAIKELAED
NITYTSDAGKTYDFNAAEKLNALLVNALFAMGKLKEGGLYDVDFDHQFIETEKYDAKPTYKKFSGYRPGVAVIGDMIVGIENSDGNTNVRFHQKDTLHRF
FGRLEARRIAINRFRADCGSCSEDIVNEVGRHCKLFYIRANRCSSIYDDIFALSGWKMEEINGIEYELNSILVDKWKGKAYRLVIQRQKRMDGVQDIWEG
EYTYRCILTNDYRSSVREIVEFYNLRGGKERIFDDMNNGFGWKRLPKSFMAENTVFLLLTALIHNFYKAIMQKLDVRKFGLKTTSRIRTFVFKFISVPAK
WIRTSRRYLLNIYTGNNAYAELFQTGHG

 

Blast result :
Comments
ISBf7 is 90% aa similar to IS613.
References
1] Kim,S., Kim,C., Yong,D., Yum,J.H., Lee,K. and Chong,Y. (20003) Direct submission GenBank.