ISBf7
- Family IS1380
- Group IS942
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY372695 | ND | Bacteroides fragilis | Bacteroides fragilis |
DNA section
IS Length : 1595 bp
Ends
IR Length : 12/14
IRL : CCTTAATTCCGCAATTTAGTTAATAATTATTTATTACAAGTACCTGAGCA
IRR : CCTCAAATCCGCAACCGTCTTCATTGAGTGATTATAGCATGATGTAAATG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TATCCTGTTTTTTTT | CTTTC | TTTTATGCTCTC | 5 |
DNA sequence
CCTTAATTCCGCAATTTAGTTAATAATTATTTATTACAAGTACCTGAGCAACAAAATGTTGCTCAGGATTTTGTCATGTCAGATTTTTCACCTATCTTAG
TGCTACCAATCAAAAAACAAATAAAAAATCGTAAAAGACATGGCAAAAGTACAAATAAAATCTGAGAAACTCACACCTTTTGGCGGTGTTTTTTCTATGA
TGGAGCAATTTGACTCCATGTTATCATCCGTAATCAACTCGACACTTGGATTGAGATGCAGGCTTTATGGCTACCAGTACAGCGAAATCATCCGTTCACT
CATGAGTGTCTACTTCTGTGGCGGTTCCTGCATAGAGGATGTCACTACCCATCTGATGAAACACCTCTCCCTCCATCCGACACTCCGTACATGCAGTGCA
GACACTATTCTCAGGGCGATAAAGGAACTGGCCGAGGATAACATCACATACACATCTGACGCTGGCAAGACTTACGACTTCAATGCAGCAGAGAAACTGA
ACGCCCTGCTTGTAAATGCCTTGTTCGCTATGGGGAAGCTGAAAGAAGGCGGACTTTACGACGTTGACTTCGACCACCAGTTCATAGAGACGGAAAAGTA
CGATGCAAAGCCTACCTACAAGAAATTTTCCGGCTACAGGCCAGGTGTGGCAGTCATCGGTGATATGATTGTCGGAATAGAGAACAGTGACGGCAATACC
AACGTGCGTTTTCATCAGAAGGACACACTGCACAGATTCTTCGGCAGGCTCGAAGCGAGGCGGATTGCCATTAACCGTTTCAGGGCGGATTGTGGTTCAT
GCTCAGAAGACATCGTGAATGAGGTCGGGAGGCATTGTAAGCTTTTCTATATCCGCGCCAACCGCTGCAGTTCGATTTATGATGACATCTTTGCTCTTTC
CGGATGGAAGATGGAAGAGATTAACGGGATAGAGTACGAACTGAATTCAATTCTCGTTGACAAATGGAAAGGGAAGGCGTACCGTCTTGTCATCCAGAGA
CAAAAGCGGATGGATGGAGTGCAGGATATATGGGAAGGCGAGTACACATACCGTTGTATTCTTACCAATGATTACAGGTCATCGGTAAGGGAAATCGTTG
AATTCTACAACTTGCGTGGAGGAAAGGAGCGTATCTTCGATGACATGAACAACGGTTTCGGATGGAAAAGGCTCCCCAAATCATTTATGGCTGAGAATAC
CGTGTTCCTTCTTCTCACTGCACTTATACATAATTTCTACAAGGCCATTATGCAGAAACTGGACGTGAGGAAGTTCGGACTCAAGACAACCAGCCGCATC
AGGACTTTTGTATTCAAGTTTATATCTGTACCTGCAAAATGGATTAGAACATCAAGGCGGTATCTGCTGAACATTTACACCGGCAATAATGCCTACGCAG
AATTGTTCCAGACAGGCCATGGATGATTCCTGTCATTTGCCGGACTTTAAAGCGTATTGCCTCAAGTCGCATTGTGGGGTAAGGGGATAGCGTGCACCAC
GATGATGATTCATGGTACACGCCAGCCAGATACACTACAAATCGGCATTTACATCATGCTATAATCACTCAATGAAGACGGTTGCGGATTTGAGG
TGCTACCAATCAAAAAACAAATAAAAAATCGTAAAAGACATGGCAAAAGTACAAATAAAATCTGAGAAACTCACACCTTTTGGCGGTGTTTTTTCTATGA
TGGAGCAATTTGACTCCATGTTATCATCCGTAATCAACTCGACACTTGGATTGAGATGCAGGCTTTATGGCTACCAGTACAGCGAAATCATCCGTTCACT
CATGAGTGTCTACTTCTGTGGCGGTTCCTGCATAGAGGATGTCACTACCCATCTGATGAAACACCTCTCCCTCCATCCGACACTCCGTACATGCAGTGCA
GACACTATTCTCAGGGCGATAAAGGAACTGGCCGAGGATAACATCACATACACATCTGACGCTGGCAAGACTTACGACTTCAATGCAGCAGAGAAACTGA
ACGCCCTGCTTGTAAATGCCTTGTTCGCTATGGGGAAGCTGAAAGAAGGCGGACTTTACGACGTTGACTTCGACCACCAGTTCATAGAGACGGAAAAGTA
CGATGCAAAGCCTACCTACAAGAAATTTTCCGGCTACAGGCCAGGTGTGGCAGTCATCGGTGATATGATTGTCGGAATAGAGAACAGTGACGGCAATACC
AACGTGCGTTTTCATCAGAAGGACACACTGCACAGATTCTTCGGCAGGCTCGAAGCGAGGCGGATTGCCATTAACCGTTTCAGGGCGGATTGTGGTTCAT
GCTCAGAAGACATCGTGAATGAGGTCGGGAGGCATTGTAAGCTTTTCTATATCCGCGCCAACCGCTGCAGTTCGATTTATGATGACATCTTTGCTCTTTC
CGGATGGAAGATGGAAGAGATTAACGGGATAGAGTACGAACTGAATTCAATTCTCGTTGACAAATGGAAAGGGAAGGCGTACCGTCTTGTCATCCAGAGA
CAAAAGCGGATGGATGGAGTGCAGGATATATGGGAAGGCGAGTACACATACCGTTGTATTCTTACCAATGATTACAGGTCATCGGTAAGGGAAATCGTTG
AATTCTACAACTTGCGTGGAGGAAAGGAGCGTATCTTCGATGACATGAACAACGGTTTCGGATGGAAAAGGCTCCCCAAATCATTTATGGCTGAGAATAC
CGTGTTCCTTCTTCTCACTGCACTTATACATAATTTCTACAAGGCCATTATGCAGAAACTGGACGTGAGGAAGTTCGGACTCAAGACAACCAGCCGCATC
AGGACTTTTGTATTCAAGTTTATATCTGTACCTGCAAAATGGATTAGAACATCAAGGCGGTATCTGCTGAACATTTACACCGGCAATAATGCCTACGCAG
AATTGTTCCAGACAGGCCATGGATGATTCCTGTCATTTGCCGGACTTTAAAGCGTATTGCCTCAAGTCGCATTGTGGGGTAAGGGGATAGCGTGCACCAC
GATGATGATTCATGGTACACGCCAGCCAGATACACTACAAATCGGCATTTACATCATGCTATAATCACTCAATGAAGACGGTTGCGGATTTGAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1287 bp | 428 aa | 140 | 1426 | + | No |
Chemistry : DDE
ORF sequence :
MAKVQIKSEKLTPFGGVFSMMEQFDSMLSSVINSTLGLRCRLYGYQYSEIIRSLMSVYFCGGSCIEDVTTHLMKHLSLHPTLRTCSADTILRAIKELAED
NITYTSDAGKTYDFNAAEKLNALLVNALFAMGKLKEGGLYDVDFDHQFIETEKYDAKPTYKKFSGYRPGVAVIGDMIVGIENSDGNTNVRFHQKDTLHRF
FGRLEARRIAINRFRADCGSCSEDIVNEVGRHCKLFYIRANRCSSIYDDIFALSGWKMEEINGIEYELNSILVDKWKGKAYRLVIQRQKRMDGVQDIWEG
EYTYRCILTNDYRSSVREIVEFYNLRGGKERIFDDMNNGFGWKRLPKSFMAENTVFLLLTALIHNFYKAIMQKLDVRKFGLKTTSRIRTFVFKFISVPAK
WIRTSRRYLLNIYTGNNAYAELFQTGHG
NITYTSDAGKTYDFNAAEKLNALLVNALFAMGKLKEGGLYDVDFDHQFIETEKYDAKPTYKKFSGYRPGVAVIGDMIVGIENSDGNTNVRFHQKDTLHRF
FGRLEARRIAINRFRADCGSCSEDIVNEVGRHCKLFYIRANRCSSIYDDIFALSGWKMEEINGIEYELNSILVDKWKGKAYRLVIQRQKRMDGVQDIWEG
EYTYRCILTNDYRSSVREIVEFYNLRGGKERIFDDMNNGFGWKRLPKSFMAENTVFLLLTALIHNFYKAIMQKLDVRKFGLKTTSRIRTFVFKFISVPAK
WIRTSRRYLLNIYTGNNAYAELFQTGHG
Blast result :
Comments
ISBf7 is 90% aa similar to IS613.
References
1] Kim,S., Kim,C., Yong,D., Yum,J.H., Lee,K. and Chong,Y. (20003) Direct submission GenBank.