ISPasp3
- Family IS982
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_005861 | ND | Parachlamydia sp. | Parachlamydia sp. UWE25 |
DNA section
IS Length : 952 bp
Ends
IR Length : 22
IRL : AATGTAAGTTGCAAATAACTAAGTTAAAATAAAATTTAGATGTAAATAAA
IRR : AATGTAAGTTGCAAATAACTAATTTATTAAAAAATTTGTTGCAGCTGCTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATATTGGATT | AATT | AATAATCAAA | 4 |
GATTTTTAAT | AGAT | ACCTATTAAC | 4 |
TAATTTTTAT | AAAT | ATGCTTCAAT | 4 |
AGTTTCTATT | TAAT | ATACAAATTA | 4 |
AAATTTGATT | TATAT | ATTAGATGGT | 5 |
DNA sequence
AATGTAAGTTGCAAATAACTAAGTTAAAATAAAATTTAGATGTAAATAAAAAGGCCTCAGATCCTTAAATTGTTTTTGTGGAACAAATAACAAGGATTGA
AGCCATGGAAGAACAAATTATAGCACTTTATTGCCTTTTAGACGACTACATCCTTTCGATTGGATACAAAGATTGGCCAAATACAAAACTGTCTACTTCG
GAAATTATGTTGATAAATTTAGTAGGAATGAGATTTTTTTACGGAAATATGGAAACGTCCCGAAAATTTCTTATTGAGCATAGATATATCATGAATAAAC
TGAGTAAGAGCGCATTAAATAGAAGAATTCATCAAATACCCATGAAATGGTGGGAGGAAATTCTTGAGTTTATTCAAAAATTAAAAAACTTTGGAAAATT
ACCTTTTGAATATATTGTTGATGCATTTCCTGTTTCTGTTTGTAGAAATATAAGAATTCAAAATTGTAGAATTTATCGAGGAGAGGAATTTAGAGGGTAT
AATGCTAGTAAGCGAGAATATTTTTATGGATTGAAAGTAACAGTCTTAGCTTCTCAAGATGGGTGCCCTTTTAGAGTTATCCTTTGTCCAGGCAGAGAGC
ATGATGCTGTTCCTTTTAAATACATGGAACGAAACTTACCCGCAGGCAGTAAGATTTATGGAGATTCTGCCTATGTCGATTATAAGCATCAAGACATGCT
TGAAAAGATAGAAAACATCAAGCTCATAGTGGAGCCAAAATCTAATTCTCTTCGTTCAATCGATTTACATGATTTTGTAAATTTGAAGCACATTAGAAAA
TTTATTGAGGGAGTATTTGGCGTGATATCAAGACTGATGCCTAGAAAAATTCATGCAACGACGTCTAATGGGTTTGAAATTAAAGTTTTAGGATTTCTAG
TAGCAGCTGCAACAAATTTTTTAATAAATTAGTTATTTGCAACTTACATT
AGCCATGGAAGAACAAATTATAGCACTTTATTGCCTTTTAGACGACTACATCCTTTCGATTGGATACAAAGATTGGCCAAATACAAAACTGTCTACTTCG
GAAATTATGTTGATAAATTTAGTAGGAATGAGATTTTTTTACGGAAATATGGAAACGTCCCGAAAATTTCTTATTGAGCATAGATATATCATGAATAAAC
TGAGTAAGAGCGCATTAAATAGAAGAATTCATCAAATACCCATGAAATGGTGGGAGGAAATTCTTGAGTTTATTCAAAAATTAAAAAACTTTGGAAAATT
ACCTTTTGAATATATTGTTGATGCATTTCCTGTTTCTGTTTGTAGAAATATAAGAATTCAAAATTGTAGAATTTATCGAGGAGAGGAATTTAGAGGGTAT
AATGCTAGTAAGCGAGAATATTTTTATGGATTGAAAGTAACAGTCTTAGCTTCTCAAGATGGGTGCCCTTTTAGAGTTATCCTTTGTCCAGGCAGAGAGC
ATGATGCTGTTCCTTTTAAATACATGGAACGAAACTTACCCGCAGGCAGTAAGATTTATGGAGATTCTGCCTATGTCGATTATAAGCATCAAGACATGCT
TGAAAAGATAGAAAACATCAAGCTCATAGTGGAGCCAAAATCTAATTCTCTTCGTTCAATCGATTTACATGATTTTGTAAATTTGAAGCACATTAGAAAA
TTTATTGAGGGAGTATTTGGCGTGATATCAAGACTGATGCCTAGAAAAATTCATGCAACGACGTCTAATGGGTTTGAAATTAAAGTTTTAGGATTTCTAG
TAGCAGCTGCAACAAATTTTTTAATAAATTAGTTATTTGCAACTTACATT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
825 bp | 275 aa | 105 | 929 | + | No |
Chemistry : DDE
ORF sequence :
MEEQIIALYCLLDDYILSIGYKDWPNTKLSTSEIMLINLVGMRFFYGNMETSRKFLIEHRYIMNKLSKSALNRRIHQIPMKWWEEILEFIQKLKNFGKLP
FEYIVDAFPVSVCRNIRIQNCRIYRGEEFRGYNASKREYFYGLKVTVLASQDGCPFRVILCPGREHDAVPFKYMERNLPAGSKIYGDSAYVDYKHQDMLE
KIENIKLIVEPKSNSLRSIDLHDFVNLKHIRKFIEGVFGVISRLMPRKIHATTSNGFEIKVLGFLVAAATNFLIN
FEYIVDAFPVSVCRNIRIQNCRIYRGEEFRGYNASKREYFYGLKVTVLASQDGCPFRVILCPGREHDAVPFKYMERNLPAGSKIYGDSAYVDYKHQDMLE
KIENIKLIVEPKSNSLRSIDLHDFVNLKHIRKFIEGVFGVISRLMPRKIHATTSNGFEIKVLGFLVAAATNFLIN
Blast result :
Comments
ISPasp3 is 45% aa siilar to ISLh1.
ISPasp3 was found by screening completely sequenced genomes for seqences homologous to the ISScr1 transposase using BLASTP. Multiple alignments revealed conserved D(N3) and E(C1) amino acids separated by 47 residues. The copy number in Parachlamydia sp. UWE25 is 5.
ISPasp3 was found by screening completely sequenced genomes for seqences homologous to the ISScr1 transposase using BLASTP. Multiple alignments revealed conserved D(N3) and E(C1) amino acids separated by 47 residues. The copy number in Parachlamydia sp. UWE25 is 5.
References
[1]Horn,M., Collingro,A., Schmitz-Esser,S., Beier,C.L., Purkhold,U., Fartmann,B., Brandt,P., Nyakatura,G.J., Droege,M., Frishman,D., Rattei,T., Mewes,H.W. and Wagner,M.(2004)Science 304,728-730