ISPin1

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAQS01000007.1 ND Psychromonas ingrahamii
Psychromonas ingrahamii 37
DNA section
IS Length : 1039 bp

Ends


IR Length : 20/24

IRL : GGCTCTGTTCCATCAAATTGTTGGCTATACTTAAAAATGAGTTTAACTTA
IRR : GGCTCTGTTCCATATTAATGTTGGTATTGATAAGCAGCAGCCAATATCTG

Insertion site


Left flankDirect repeatRight flankDR Length
GTCACTGACTTTGTATAACAATACATCACCTGGTTGAA8

DNA sequence

GGCTCTGTTCCATCAAATTGTTGGCTATACTTAAAAATGAGTTTAACTTATTGAAGGTAAAGGCAATGAAAACAGAATTATTTCGATGTCAGCTCAATCA
CATTACAAAAACACTTTTAGCCATGACACCCGCTCAAAGATTAACGGTTCAGCACGTTATTCAAGTATCTCAACCAGAAATTACGATTAATGAGCTGATC
CAACCTATTTTCAATTCATCACCTCAATGCCCACATTGCCATTGTGCACATTTTACTAAGTGGGGAAAAGCGGGATCGGTACAACGCTATAAATGCTTTT
CTTGTCATAAGACATTCAATAATAAAACAAAAACACCTTTAGCTAAGTTACATAGATGTGAGCTTTGGGATAAATACGCTGAGTGTATGTCGTTGAAACT
CACATTACGTGAAGCAGCTGCTGTTTGTAACATTAATCTGAAAACCTCATTTCTTTGGCGTCACCGTTTTTTGATGGCGCAATCTGAGCACAATCATGAA
AAATTATCGGGAATAATTGAAGCTGATGAGTTTTTTATGGCGTATTCGGAAAAAGGAAGTAAGCAGCTAAAAAACAATAGAAAAGCCAATAAGCGTGGTG
GTCAAATGAGTAAAAAACATAACGAGAGTAAAGTAACCATTCTACTCTCAATAGATCGCAGCGAACATATGGTGAGTCACGTTTTAGCAGCAAATACTAA
AGCGGAAATTAAATCATATTTACAGCCATATATAACCACAGAGTCAGTTTTATGTACTGATGGTGCTCATGCTTATGAGGAAATAGCTAACGTCACCCAA
TGCGAGCATAAACGGCTTATTAGTACGAAAAACAGAGTCATTGATAAGGTTTATCATATTCAGACTGTTAATGGTGCCATAGCCCATTTTAAAGGTTGGA
TTGATGTAAAAATGCGAGGAGTTGCGACTAAGTATTTATCACATTATCTTGCTTGGTTTAAAGAAACGAGGACTAAGTTAGATAAACAGCAGATATTGGC
TGCTGCTTATCAATACCAACATTAATATGGAACAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
960 bp319 aa661025+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKTELFRCQLNHITKTLLAMTPAQRLTVQHVIQVSQPEITINELIQPIFNSSPQCPHCHCAHFTKWGKAGSVQRYKCFSCHKTFNNKTKTPLAKLHRCEL
WDKYAECMSLKLTLREAAAVCNINLKTSFLWRHRFLMAQSEHNHEKLSGIIEADEFFMAYSEKGSKQLKNNRKANKRGGQMSKKHNESKVTILLSIDRSE
HMVSHVLAANTKAEIKSYLQPYITTESVLCTDGAHAYEEIANVTQCEHKRLISTKNRVIDKVYHIQTVNGAIAHFKGWIDVKMRGVATKYLSHYLAWFKE
TRTKLDKQQILAAAYQYQH

 

Blast result :
Comments
ISPin1 is 54% aa similar to ISAzvi1
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. (2006) Direct submission Genbank.