ISPpr6
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CR378677 | ND | Photobacterium profundum | Photobacterium profundum SS9 |
DNA section
IS Length : 1039 bp
Ends
IR Length : 19/25
IRL : GGCTCTGTTCCATCAAAATGTTGACTACACTTATAAGTGTAGTTAACAGC
IRR : GGCTCTGTTCCAGATTATTGTTGTCATCGGTATGCCGCTACTAACATTTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGCACTAGGCAAGGC | ACTTATTT | ATAGACCTAGTC | 8 |
DNA sequence
GGCTCTGTTCCATCAAAATGTTGACTACACTTATAAGTGTAGTTAACAGCTTGAAGGTTAAGGCAATGAGAGCTAAAACATTCACATATCGCTTGAAGTA
TATTACTCAACTACTTTTAGACATGACTCCGGCTCAAAGAGAGCAAGTTAAGCTGAACATTCAATCTATTCAGCCAGAAATAACTGTCGGTGACATTATT
CAGCCTATTTTTGATATTTCACCTCAATGTCCACACTGTCATTCACTTCATTTTAATAAATGGGGTAAATCTGGTTCAGTGCAGCGTTATCGCTGCAAAG
AGTGCGCTAAAACATTCAATATAAAAACAAAAACGCCATTAGCAAAATTACATAAATGTGATCTTTGGCTGCAATATGCAGAATGTATGGAGCTGAAATT
ACCATTACGTCAAGCTGCCAAGATTTGTAATATTAATCTTAAAACAGCATTTTTATGGCGACATCGTTTTCTTGAAGCTCAATCAGAGCAATATAAAGAT
AAATTATCTGGGATCATTGAGGTTGACGAATTTTTTCTGGCCTACTCTGAAAAAGGCACAAAAAAGTTGAATGGAGATAGGGTTGCAAGGAAACGCGGGG
GCGAAGTAGACAAAAGAAAACGAGGTGAACAGGTCGCAGTGCTTTTGTCGATAGACCGTAGTAAGCACATGATTGATGGTGTTTTAGCGGATGATACAGC
CTCTGAAATCAGTTCGCATTTAGAACCATATATAGTCAAAGATTCTATCTTGTGCAGTGATGGCGCTTGGGCATACGTCAGCATAGCTGAAGAAACAAAT
TGTGACCATAAAAGGCTGATAAGTAATGAAAATAGAGTGCAAGATAAGATTTATCATATTCAGACAGTGAATGGTGCTATAGCACATTTTAAAGGTTGGA
TAGATATAAAAATGCGAGGCGTCGCAACGAAGTATTTACCCCATTATCTCGCTTGGTTTAGAGAAAGCTATGCAGGTCTTAATTTTCAGCAAATGTTAGT
AGCGGCATACCGATGACAACAATAATCTGGAACAGAGCC
TATTACTCAACTACTTTTAGACATGACTCCGGCTCAAAGAGAGCAAGTTAAGCTGAACATTCAATCTATTCAGCCAGAAATAACTGTCGGTGACATTATT
CAGCCTATTTTTGATATTTCACCTCAATGTCCACACTGTCATTCACTTCATTTTAATAAATGGGGTAAATCTGGTTCAGTGCAGCGTTATCGCTGCAAAG
AGTGCGCTAAAACATTCAATATAAAAACAAAAACGCCATTAGCAAAATTACATAAATGTGATCTTTGGCTGCAATATGCAGAATGTATGGAGCTGAAATT
ACCATTACGTCAAGCTGCCAAGATTTGTAATATTAATCTTAAAACAGCATTTTTATGGCGACATCGTTTTCTTGAAGCTCAATCAGAGCAATATAAAGAT
AAATTATCTGGGATCATTGAGGTTGACGAATTTTTTCTGGCCTACTCTGAAAAAGGCACAAAAAAGTTGAATGGAGATAGGGTTGCAAGGAAACGCGGGG
GCGAAGTAGACAAAAGAAAACGAGGTGAACAGGTCGCAGTGCTTTTGTCGATAGACCGTAGTAAGCACATGATTGATGGTGTTTTAGCGGATGATACAGC
CTCTGAAATCAGTTCGCATTTAGAACCATATATAGTCAAAGATTCTATCTTGTGCAGTGATGGCGCTTGGGCATACGTCAGCATAGCTGAAGAAACAAAT
TGTGACCATAAAAGGCTGATAAGTAATGAAAATAGAGTGCAAGATAAGATTTATCATATTCAGACAGTGAATGGTGCTATAGCACATTTTAAAGGTTGGA
TAGATATAAAAATGCGAGGCGTCGCAACGAAGTATTTACCCCATTATCTCGCTTGGTTTAGAGAAAGCTATGCAGGTCTTAATTTTCAGCAAATGTTAGT
AGCGGCATACCGATGACAACAATAATCTGGAACAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
951 bp | 316 aa | 66 | 1016 | + | No |
Chemistry : DDE
ORF sequence :
MRAKTFTYRLKYITQLLLDMTPAQREQVKLNIQSIQPEITVGDIIQPIFDISPQCPHCHSLHFNKWGKSGSVQRYRCKECAKTFNIKTKTPLAKLHKCDL
WLQYAECMELKLPLRQAAKICNINLKTAFLWRHRFLEAQSEQYKDKLSGIIEVDEFFLAYSEKGTKKLNGDRVARKRGGEVDKRKRGEQVAVLLSIDRSK
HMIDGVLADDTASEISSHLEPYIVKDSILCSDGAWAYVSIAEETNCDHKRLISNENRVQDKIYHIQTVNGAIAHFKGWIDIKMRGVATKYLPHYLAWFRE
SYAGLNFQQMLVAAYR
WLQYAECMELKLPLRQAAKICNINLKTAFLWRHRFLEAQSEQYKDKLSGIIEVDEFFLAYSEKGTKKLNGDRVARKRGGEVDKRKRGEQVAVLLSIDRSK
HMIDGVLADDTASEISSHLEPYIVKDSILCSDGAWAYVSIAEETNCDHKRLISNENRVQDKIYHIQTVNGAIAHFKGWIDIKMRGVATKYLPHYLAWFRE
SYAGLNFQQMLVAAYR
Blast result :
Comments
ISPpr6 is 53% aa similar to ISAzvi1.
References
1] Vezzi,A., Campanaro,S., D'Angelo,M., Simonato,F., Vitulo,N., Lauro,F., Cestaro,A., Malacrida,G., Simionati,B., Cannata,N., Bartlett,D. and Valle,G. (2004) Direct submission Genbank.