ISPpr6

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CR378677 ND Photobacterium profundum
Photobacterium profundum SS9
DNA section
IS Length : 1039 bp

Ends


IR Length : 19/25

IRL : GGCTCTGTTCCATCAAAATGTTGACTACACTTATAAGTGTAGTTAACAGC
IRR : GGCTCTGTTCCAGATTATTGTTGTCATCGGTATGCCGCTACTAACATTTG

Insertion site


Left flankDirect repeatRight flankDR Length
GGCACTAGGCAAGGCACTTATTTATAGACCTAGTC8

DNA sequence

GGCTCTGTTCCATCAAAATGTTGACTACACTTATAAGTGTAGTTAACAGCTTGAAGGTTAAGGCAATGAGAGCTAAAACATTCACATATCGCTTGAAGTA
TATTACTCAACTACTTTTAGACATGACTCCGGCTCAAAGAGAGCAAGTTAAGCTGAACATTCAATCTATTCAGCCAGAAATAACTGTCGGTGACATTATT
CAGCCTATTTTTGATATTTCACCTCAATGTCCACACTGTCATTCACTTCATTTTAATAAATGGGGTAAATCTGGTTCAGTGCAGCGTTATCGCTGCAAAG
AGTGCGCTAAAACATTCAATATAAAAACAAAAACGCCATTAGCAAAATTACATAAATGTGATCTTTGGCTGCAATATGCAGAATGTATGGAGCTGAAATT
ACCATTACGTCAAGCTGCCAAGATTTGTAATATTAATCTTAAAACAGCATTTTTATGGCGACATCGTTTTCTTGAAGCTCAATCAGAGCAATATAAAGAT
AAATTATCTGGGATCATTGAGGTTGACGAATTTTTTCTGGCCTACTCTGAAAAAGGCACAAAAAAGTTGAATGGAGATAGGGTTGCAAGGAAACGCGGGG
GCGAAGTAGACAAAAGAAAACGAGGTGAACAGGTCGCAGTGCTTTTGTCGATAGACCGTAGTAAGCACATGATTGATGGTGTTTTAGCGGATGATACAGC
CTCTGAAATCAGTTCGCATTTAGAACCATATATAGTCAAAGATTCTATCTTGTGCAGTGATGGCGCTTGGGCATACGTCAGCATAGCTGAAGAAACAAAT
TGTGACCATAAAAGGCTGATAAGTAATGAAAATAGAGTGCAAGATAAGATTTATCATATTCAGACAGTGAATGGTGCTATAGCACATTTTAAAGGTTGGA
TAGATATAAAAATGCGAGGCGTCGCAACGAAGTATTTACCCCATTATCTCGCTTGGTTTAGAGAAAGCTATGCAGGTCTTAATTTTCAGCAAATGTTAGT
AGCGGCATACCGATGACAACAATAATCTGGAACAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
951 bp316 aa661016+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRAKTFTYRLKYITQLLLDMTPAQREQVKLNIQSIQPEITVGDIIQPIFDISPQCPHCHSLHFNKWGKSGSVQRYRCKECAKTFNIKTKTPLAKLHKCDL
WLQYAECMELKLPLRQAAKICNINLKTAFLWRHRFLEAQSEQYKDKLSGIIEVDEFFLAYSEKGTKKLNGDRVARKRGGEVDKRKRGEQVAVLLSIDRSK
HMIDGVLADDTASEISSHLEPYIVKDSILCSDGAWAYVSIAEETNCDHKRLISNENRVQDKIYHIQTVNGAIAHFKGWIDIKMRGVATKYLPHYLAWFRE
SYAGLNFQQMLVAAYR

 

Blast result :
Comments
ISPpr6 is 53% aa similar to ISAzvi1.
References
1] Vezzi,A., Campanaro,S., D'Angelo,M., Simonato,F., Vitulo,N., Lauro,F., Cestaro,A., Malacrida,G., Simionati,B., Cannata,N., Bartlett,D. and Valle,G. (2004) Direct submission Genbank.