ISSag10
- Family IS1595
- Group ISPna2
Isoform Synonym(s) MtnLNU
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY928180 | ND | Streptococcus agalactiae | Streptococcus agalactiae UCN36 |
DNA section
IS Length : 1724 bp
Ends
IR Length : 22/25
IRL : GGCTCTGTCACAACAAATGGTTGATTTTTGACGAGGAATAGCGTATAATA
IRR : GGCTATGTCACAACAAACAGTTGATAAATAGCCTTTTTATAGGGGAGTAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNNNNNNNN | TTATTTTT | NNNNNNNNNN | 8 |
DNA sequence
GGCTCTGTCACAACAAATGGTTGATTTTTGACGAGGAATAGCGTATAATAATAGTAAGAAACAGTACCACCGAAGGAGGTAATTGGATATGCCTACTATC
AAAGACGCATTAGATATTATCGGTAAGTTGACTGTCGCAGAGCAGGAAAGCCTTAAAACAATGCTTTTAAGTCCTGCCTTTGTAAAGTCTTTGAATATTG
AAGATTTCGCAGCAAAGGAACGCTTTGCAAATGGTCGTGTATGCCCTCTTTGTGGCTGTATCCATGTGGTTCGCAATGGTCATCGTAAAGATGGCACACA
GCGATATGTATGTAAGGATTGTGGCAAGTCCTTCGTGATTGCTACGAACTCCATTGTGTCTGGTACAAGAAAAGACTTGTCCGTGTGGGAGCAGTACATT
GATTGTATGATGAATGGCTTATCCATTCGTAAGACTGCTGTTGCTTGTGGGATTCACAGAAACACCGCATTCCTTTGGAGACACAAGATTTTGGATGCAC
TTCAGAATATGGCAGACGATGTTACCCTTGACGGCATTATTGAGGCTGACGAAACTTTTTTCGCCATCTCGTACAAGGGCAATCATAGCAAGAGTAAGAC
ATTTGCTATGCCACGCAAGGCTCATAAGCGTGGTCATTCTACACATATCAGAGGCTTGTCCCAAGAAAAGGTATGTGTTCCTTGTGCGGTTAATAGGAAT
GGCTTGTCTATCTCCAAGATTACGAATACTGGTAGAGTTTCTACAAGAGATTTACATCATATTTATGATGGTAGGATTAAGACCAATTCCACTCTTGTTA
CGGACAAGATGAACTCCTATGTGAGATTTACAAATGCCAATGGCATTGACCTTGTGCAGTTAAAGACTGGCAAAGCCAAGAAAGGCATTTATAATATCCA
ACATATCAATAGCTACCATAGCCAGCTAAAGAGGTTTATGCGTGGCTTTAACGGTGTTTCTACCAAGTATCTGAACAACTATCTTGTGTGGAATAACCTT
GTAAATTACGCCAAAGAAAGCGACATGGAGAAAAGGAACATCTTCTTAACTTTCGTTTTGGCAACATTGAAAACTGCTAAATGCAGAGATTTATCAAACA
GACCAGCAGTTCCTCTGGTCGCCTAATTAGAATTTGTGGAGATGATAAGATGGTCAATATAACAGATGTAAACCAGATTTTCCAATTTGCAATAGATGCG
GAGATTAAAGTCTTTCTTGATGGTGGCTGGGGTGTAGATGCTCTTCTTGGATATCAGTCAAGAGCCCATAATGATATTGACATTTTTGTAGAAAAGAACG
ATTATCAGAACTTTATAGAAATAATGAAAGCTAATGGCTTTTATGAGATTAAGATGGAATATACAACATTGAACCATACTGTATGGGAAGATTTGAAAAA
CAGAATTATTGATTTGCATTGTTTTGAATATACGGACGAAGGTGAAATTCTTTATGATGGGGATTGTTTTCCGGTAGAAACTCTTTCGGGTAAAGGAAGA
ATTGAGGAAATAGAGGTTTCCTGTATTGAACCATATAGTCAAGTAATGTTCCATCTGGGATACGAGTTTGATGAAAATGATGCACATGATGTGAAGTTAT
TGTGTGAGACACTTCATATCGAAATTCCAAATGAGTATAGATAACTGCAAATAACAGTTTGTAGGGGAGTTCTGATACTCCCCTATAAAAAGGCTATTTA
TCAACTGTTTGTTGTGACATAGCC
AAAGACGCATTAGATATTATCGGTAAGTTGACTGTCGCAGAGCAGGAAAGCCTTAAAACAATGCTTTTAAGTCCTGCCTTTGTAAAGTCTTTGAATATTG
AAGATTTCGCAGCAAAGGAACGCTTTGCAAATGGTCGTGTATGCCCTCTTTGTGGCTGTATCCATGTGGTTCGCAATGGTCATCGTAAAGATGGCACACA
GCGATATGTATGTAAGGATTGTGGCAAGTCCTTCGTGATTGCTACGAACTCCATTGTGTCTGGTACAAGAAAAGACTTGTCCGTGTGGGAGCAGTACATT
GATTGTATGATGAATGGCTTATCCATTCGTAAGACTGCTGTTGCTTGTGGGATTCACAGAAACACCGCATTCCTTTGGAGACACAAGATTTTGGATGCAC
TTCAGAATATGGCAGACGATGTTACCCTTGACGGCATTATTGAGGCTGACGAAACTTTTTTCGCCATCTCGTACAAGGGCAATCATAGCAAGAGTAAGAC
ATTTGCTATGCCACGCAAGGCTCATAAGCGTGGTCATTCTACACATATCAGAGGCTTGTCCCAAGAAAAGGTATGTGTTCCTTGTGCGGTTAATAGGAAT
GGCTTGTCTATCTCCAAGATTACGAATACTGGTAGAGTTTCTACAAGAGATTTACATCATATTTATGATGGTAGGATTAAGACCAATTCCACTCTTGTTA
CGGACAAGATGAACTCCTATGTGAGATTTACAAATGCCAATGGCATTGACCTTGTGCAGTTAAAGACTGGCAAAGCCAAGAAAGGCATTTATAATATCCA
ACATATCAATAGCTACCATAGCCAGCTAAAGAGGTTTATGCGTGGCTTTAACGGTGTTTCTACCAAGTATCTGAACAACTATCTTGTGTGGAATAACCTT
GTAAATTACGCCAAAGAAAGCGACATGGAGAAAAGGAACATCTTCTTAACTTTCGTTTTGGCAACATTGAAAACTGCTAAATGCAGAGATTTATCAAACA
GACCAGCAGTTCCTCTGGTCGCCTAATTAGAATTTGTGGAGATGATAAGATGGTCAATATAACAGATGTAAACCAGATTTTCCAATTTGCAATAGATGCG
GAGATTAAAGTCTTTCTTGATGGTGGCTGGGGTGTAGATGCTCTTCTTGGATATCAGTCAAGAGCCCATAATGATATTGACATTTTTGTAGAAAAGAACG
ATTATCAGAACTTTATAGAAATAATGAAAGCTAATGGCTTTTATGAGATTAAGATGGAATATACAACATTGAACCATACTGTATGGGAAGATTTGAAAAA
CAGAATTATTGATTTGCATTGTTTTGAATATACGGACGAAGGTGAAATTCTTTATGATGGGGATTGTTTTCCGGTAGAAACTCTTTCGGGTAAAGGAAGA
ATTGAGGAAATAGAGGTTTCCTGTATTGAACCATATAGTCAAGTAATGTTCCATCTGGGATACGAGTTTGATGAAAATGATGCACATGATGTGAAGTTAT
TGTGTGAGACACTTCATATCGAAATTCCAAATGAGTATAGATAACTGCAAATAACAGTTTGTAGGGGAGTTCTGATACTCCCCTATAAAAAGGCTATTTA
TCAACTGTTTGTTGTGACATAGCC
Protein section
ORF number : 2
ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
495 bp | 164 aa | 1150 | 1644 | + | No |
Annotation : O-lincosamide nucleotidyltransferaseDescription : Antibiotic resistance
ORF sequence :
MVNITDVNQIFQFAIDAEIKVFLDGGWGVDALLGYQSRAHNDIDIFVEKNDYQNFIEIMKANGFYEIKMEYTTLNHTVWEDLKNRIIDLHCFEYTDEGEI
LYDGDCFPVETLSGKGRIEEIEVSCIEPYSQVMFHLGYEFDENDAHDVKLLCETLHIEIPNEYR
LYDGDCFPVETLSGKGRIEEIEVSCIEPYSQVMFHLGYEFDENDAHDVKLLCETLHIEIPNEYR
Blast result :ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1038 bp | 345 aa | 89 | 1126 | + | No |
Chemistry : DDE
ORF sequence :
MPTIKDALDIIGKLTVAEQESLKTMLLSPAFVKSLNIEDFAAKERFANGRVCPLCGCIHVVRNGHRKDGTQRYVCKDCGKSFVIATNSIVSGTRKDLSVW
EQYIDCMMNGLSIRKTAVACGIHRNTAFLWRHKILDALQNMADDVTLDGIIEADETFFAISYKGNHSKSKTFAMPRKAHKRGHSTHIRGLSQEKVCVPCA
VNRNGLSISKITNTGRVSTRDLHHIYDGRIKTNSTLVTDKMNSYVRFTNANGIDLVQLKTGKAKKGIYNIQHINSYHSQLKRFMRGFNGVSTKYLNNYLV
WNNLVNYAKESDMEKRNIFLTFVLATLKTAKCRDLSNRPAVPLVA
EQYIDCMMNGLSIRKTAVACGIHRNTAFLWRHKILDALQNMADDVTLDGIIEADETFFAISYKGNHSKSKTFAMPRKAHKRGHSTHIRGLSQEKVCVPCA
VNRNGLSISKITNTGRVSTRDLHHIYDGRIKTNSTLVTDKMNSYVRFTNANGIDLVQLKTGKAKKGIYNIQHINSYHSQLKRFMRGFNGVSTKYLNNYLV
WNNLVNYAKESDMEKRNIFLTFVLATLKTAKCRDLSNRPAVPLVA
Blast result :
Comments
ISSag10 is 58% aa similar to ISBwe1
The second ORF is the gene of O-lincosamide nucleotidyltransferase.
The second ORF is the gene of O-lincosamide nucleotidyltransferase.
References
1] Achard,A., Villers,C., Pichereau,V. and Leclercq,R. (2005) Antimicrob. Agents Chemother. 49 (7), 2716-2719