ISNe7
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_004757 | ND | Nitrosomonas europaea | Nitrosomonas europaea ATCC 19718 |
DNA section
IS Length : 1050 bp
Ends
IR Length : 21/26
IRL : GGCTATGTCTGCATTAAACGTTGAAAAGTCATTTTTGTCCAACGAGCTGG
IRR : GGCTATGTATTCGTTAACAGTTGAAACTGATTTTCCCGGCCGAGAGCGGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGCTTTGTATAACC | TTTCTAAT | ACCTGAAAAG | 8 |
DNA sequence
GGCTATGTCTGCATTAAACGTTGAAAAGTCATTTTTGTCCAACGAGCTGGAACATCAATAGAGGGAGGGCACGATTATGAAAGCCTCTGATTTTCGGGAA
TGGGTTGGAAAAATAACGCAACTTAGCCGCGGTCAGAAAGAGCAGACCAAACATAAGCTTGGTGGAATGGTGCCACGAATCGAGGTGGCGAAGTGGCTTG
AAAGTTCTTTTGAGCCGATTTGTCCGGTTTGCCAATCGAATCATTTTTATCGCTGGGGATATCAGGCGGGATTACAGCGTTTCTACTGCCGCATGTGCAA
GCACACGTTTACAGCTATATCGGGCACTCCGCTGGCTCGTCTGCGACACAAGGATCAATGGCTGAATTACAGCGCAGCATTGATTGAAGGCCTGACTGTG
CGGGCAAGCGCCAGACAATGCAGGATCGATAAGAACACCAGTTTCCGCTGGCGTCACCGATTTCTGACTTTACCGGCGGCTGCCAAAGCCAATCATCTGG
AAGGAATTGTCGAAGCGGATGAAACTTTCTTTCCTGTTTCCTGTAAAGGACAGCGCCAGCTGGATCGACCACCGCGTAAACGCGGTAAACAAATCCATAT
GCGGGGGACAGGAAAAGATCAGGTGCCAGTGCTGATAGTGCGCGACCGCTCGGGCGCAACAGCAGATTTTATGCTGGATGCAATTGACAGGAAGGCAATT
GAGCCTCCTTTACGAACTGTTCTGGAAAAAGATGTCATTTTCTGCAGCGATGGTGCGGCTGTTTATCGATCCGTGGCCCGCAGTCTTGGAATCACCCATC
GTCCCGTCAATCTTGCTGCCGGGGTTCGAGTCATCGCTGGTGTCTATCATATTCAGAACGTTAACGCTTACCACAGCCGGCTCAAACAATGGATGAAACG
ATTCCATGGCGTTGCTACCCGGTATCTGGAAAATTACCTCGGATGGTTCAGGTGGCTCGATCAACAGGAAAATCTCAGTTCACCTATTGTCCCACTGCAA
GCCGCTCTCGGCCGGGAAAATCAGTTTCAACTGTTAACGAATACATAGCC
TGGGTTGGAAAAATAACGCAACTTAGCCGCGGTCAGAAAGAGCAGACCAAACATAAGCTTGGTGGAATGGTGCCACGAATCGAGGTGGCGAAGTGGCTTG
AAAGTTCTTTTGAGCCGATTTGTCCGGTTTGCCAATCGAATCATTTTTATCGCTGGGGATATCAGGCGGGATTACAGCGTTTCTACTGCCGCATGTGCAA
GCACACGTTTACAGCTATATCGGGCACTCCGCTGGCTCGTCTGCGACACAAGGATCAATGGCTGAATTACAGCGCAGCATTGATTGAAGGCCTGACTGTG
CGGGCAAGCGCCAGACAATGCAGGATCGATAAGAACACCAGTTTCCGCTGGCGTCACCGATTTCTGACTTTACCGGCGGCTGCCAAAGCCAATCATCTGG
AAGGAATTGTCGAAGCGGATGAAACTTTCTTTCCTGTTTCCTGTAAAGGACAGCGCCAGCTGGATCGACCACCGCGTAAACGCGGTAAACAAATCCATAT
GCGGGGGACAGGAAAAGATCAGGTGCCAGTGCTGATAGTGCGCGACCGCTCGGGCGCAACAGCAGATTTTATGCTGGATGCAATTGACAGGAAGGCAATT
GAGCCTCCTTTACGAACTGTTCTGGAAAAAGATGTCATTTTCTGCAGCGATGGTGCGGCTGTTTATCGATCCGTGGCCCGCAGTCTTGGAATCACCCATC
GTCCCGTCAATCTTGCTGCCGGGGTTCGAGTCATCGCTGGTGTCTATCATATTCAGAACGTTAACGCTTACCACAGCCGGCTCAAACAATGGATGAAACG
ATTCCATGGCGTTGCTACCCGGTATCTGGAAAATTACCTCGGATGGTTCAGGTGGCTCGATCAACAGGAAAATCTCAGTTCACCTATTGTCCCACTGCAA
GCCGCTCTCGGCCGGGAAAATCAGTTTCAACTGTTAACGAATACATAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
972 bp | 323 aa | 77 | 1048 | + | No |
Chemistry : DDE
ORF sequence :
MKASDFREWVGKITQLSRGQKEQTKHKLGGMVPRIEVAKWLESSFEPICPVCQSNHFYRWGYQAGLQRFYCRMCKHTFTAISGTPLARLRHKDQWLNYSA
ALIEGLTVRASARQCRIDKNTSFRWRHRFLTLPAAAKANHLEGIVEADETFFPVSCKGQRQLDRPPRKRGKQIHMRGTGKDQVPVLIVRDRSGATADFML
DAIDRKAIEPPLRTVLEKDVIFCSDGAAVYRSVARSLGITHRPVNLAAGVRVIAGVYHIQNVNAYHSRLKQWMKRFHGVATRYLENYLGWFRWLDQQENL
SSPIVPLQAALGRENQFQLLTNT
ALIEGLTVRASARQCRIDKNTSFRWRHRFLTLPAAAKANHLEGIVEADETFFPVSCKGQRQLDRPPRKRGKQIHMRGTGKDQVPVLIVRDRSGATADFML
DAIDRKAIEPPLRTVLEKDVIFCSDGAAVYRSVARSLGITHRPVNLAAGVRVIAGVYHIQNVNAYHSRLKQWMKRFHGVATRYLENYLGWFRWLDQQENL
SSPIVPLQAALGRENQFQLLTNT
Blast result :
Comments
ISNe7 is 62% aa similar to ISAzvi1.
References
1] Chain,P., Lamerdin,J., Larimer,F., Regala,W., Lao,V., Land,M., Hauser,L., Hooper,A., Klotz,M., Norton,J., Sayavedra-Soto,L., Arciero,D., Hommes,N., Whittaker,M. and Arp,D. (2003) J. Bacteriol. 185 (9), 2759-2773