ISNe7

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_004757 ND Nitrosomonas europaea
Nitrosomonas europaea ATCC 19718
DNA section
IS Length : 1050 bp

Ends


IR Length : 21/26

IRL : GGCTATGTCTGCATTAAACGTTGAAAAGTCATTTTTGTCCAACGAGCTGG
IRR : GGCTATGTATTCGTTAACAGTTGAAACTGATTTTCCCGGCCGAGAGCGGC

Insertion site


Left flankDirect repeatRight flankDR Length
AGCTTTGTATAACCTTTCTAATACCTGAAAAG8

DNA sequence

GGCTATGTCTGCATTAAACGTTGAAAAGTCATTTTTGTCCAACGAGCTGGAACATCAATAGAGGGAGGGCACGATTATGAAAGCCTCTGATTTTCGGGAA
TGGGTTGGAAAAATAACGCAACTTAGCCGCGGTCAGAAAGAGCAGACCAAACATAAGCTTGGTGGAATGGTGCCACGAATCGAGGTGGCGAAGTGGCTTG
AAAGTTCTTTTGAGCCGATTTGTCCGGTTTGCCAATCGAATCATTTTTATCGCTGGGGATATCAGGCGGGATTACAGCGTTTCTACTGCCGCATGTGCAA
GCACACGTTTACAGCTATATCGGGCACTCCGCTGGCTCGTCTGCGACACAAGGATCAATGGCTGAATTACAGCGCAGCATTGATTGAAGGCCTGACTGTG
CGGGCAAGCGCCAGACAATGCAGGATCGATAAGAACACCAGTTTCCGCTGGCGTCACCGATTTCTGACTTTACCGGCGGCTGCCAAAGCCAATCATCTGG
AAGGAATTGTCGAAGCGGATGAAACTTTCTTTCCTGTTTCCTGTAAAGGACAGCGCCAGCTGGATCGACCACCGCGTAAACGCGGTAAACAAATCCATAT
GCGGGGGACAGGAAAAGATCAGGTGCCAGTGCTGATAGTGCGCGACCGCTCGGGCGCAACAGCAGATTTTATGCTGGATGCAATTGACAGGAAGGCAATT
GAGCCTCCTTTACGAACTGTTCTGGAAAAAGATGTCATTTTCTGCAGCGATGGTGCGGCTGTTTATCGATCCGTGGCCCGCAGTCTTGGAATCACCCATC
GTCCCGTCAATCTTGCTGCCGGGGTTCGAGTCATCGCTGGTGTCTATCATATTCAGAACGTTAACGCTTACCACAGCCGGCTCAAACAATGGATGAAACG
ATTCCATGGCGTTGCTACCCGGTATCTGGAAAATTACCTCGGATGGTTCAGGTGGCTCGATCAACAGGAAAATCTCAGTTCACCTATTGTCCCACTGCAA
GCCGCTCTCGGCCGGGAAAATCAGTTTCAACTGTTAACGAATACATAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
972 bp323 aa771048+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKASDFREWVGKITQLSRGQKEQTKHKLGGMVPRIEVAKWLESSFEPICPVCQSNHFYRWGYQAGLQRFYCRMCKHTFTAISGTPLARLRHKDQWLNYSA
ALIEGLTVRASARQCRIDKNTSFRWRHRFLTLPAAAKANHLEGIVEADETFFPVSCKGQRQLDRPPRKRGKQIHMRGTGKDQVPVLIVRDRSGATADFML
DAIDRKAIEPPLRTVLEKDVIFCSDGAAVYRSVARSLGITHRPVNLAAGVRVIAGVYHIQNVNAYHSRLKQWMKRFHGVATRYLENYLGWFRWLDQQENL
SSPIVPLQAALGRENQFQLLTNT

 

Blast result :
Comments
ISNe7 is 62% aa similar to ISAzvi1.
References
1] Chain,P., Lamerdin,J., Larimer,F., Regala,W., Lao,V., Land,M., Hauser,L., Hooper,A., Klotz,M., Norton,J., Sayavedra-Soto,L., Arciero,D., Hommes,N., Whittaker,M. and Arp,D. (2003) J. Bacteriol. 185 (9), 2759-2773