ISPto1
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAPR01000036 | ND | Psychroflexus torquis | Psychroflexus torquis ATCC 700755 |
DNA section
IS Length : 1081 bp
Ends
IR Length : 20/27
IRL : GGCTCTAGTTTAATACAGCTATTATATGTATATTTAGATTATGAACATAG
IRR : GGCTCTAGTTTAGGTCTGCGTTGATATTAAGTTTTCATATCTAGATTCGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTATTTCACTTAA | TTGTTTTC | TTAAATCCGAATTT | 8 |
DNA sequence
GGCTCTAGTTTAATACAGCTATTATATGTATATTTAGATTATGAACATAGATAATCTAAAAGAGGAAATACTATCACTATCCACTCTAGATCGTGATAAT
CTGTTAAAGGATATTACAGATTCACTTGAGCATAATCAATTGGTTGAGCGGGCTTCCCGTCGCCATATTTTAGATAATAAAATGGGCGGATGCCCACATT
GTTTACATGAAAAATATGTTCGTTTTGGAGTTGACAAAGGCTCGCAGCGCTATAAGTGCAAGTCTTGCAATAGAAGCTTTACTGAATATACTGGCACTTG
GATGGCGGGACTTCAAAGAAAGGATATGATTTCATCTTATTTAAGTCTTATGGTTCAAGAAAAAAGTTTAGATAAAATAAGTTCAGAATTAGGCATCAAT
AAAAAGACAGCCTTTGATTGGCGTCATAAGATATTAGCTTCATTCGATACTAAAAATGACGATGACCAAGACAACTTTACAGGTATTACAGAGAGTGACG
AAACCTTTTTCCTAAGATCAGAAAAAGGTATGGAGGTAAAAGATAGGGAATCAAGAAAAAGAGGCGGTAAGTCTAAAAAGAGAGGTATAAGTAAAGATCA
AGTTGCGGTAATTGTAACACAGGATAGAAAATCAACATTAGACCTTAGCGTGGCTAAACTCGGTCGAATAGGAAAAGTAGATATAGAAAATGCTATCGGT
AAACGTGTTATAAAGGATATAACCATATTGTGTAGCGATGCCCATCACAGTTATAAAGGGTTTGCCAAAGATAGCGAAACAGAGTTCCACATCGTAAATG
CATCAAAAGGAGAAAGAGTAAAAGGAAAGTATCACATACAACACGTTAATTCTACTCACAATAGAGTTAAAAAATGGATTGAAAATACCTTTTGGGGAGT
ATCAACAAAATATCTACAACAATATATGAATTGGTATCGAATAAAGGAAAATATAAAGTCTAGAAGCGATAGAGCCAACGCCTTTGTGGAAGAAACAATT
GCTCTAGGTACATTGAAACGGTATAATCAAATCGAATCTAGATATGAAAACTTAATATCAACGCAGACCTAAACTAGAGCC
CTGTTAAAGGATATTACAGATTCACTTGAGCATAATCAATTGGTTGAGCGGGCTTCCCGTCGCCATATTTTAGATAATAAAATGGGCGGATGCCCACATT
GTTTACATGAAAAATATGTTCGTTTTGGAGTTGACAAAGGCTCGCAGCGCTATAAGTGCAAGTCTTGCAATAGAAGCTTTACTGAATATACTGGCACTTG
GATGGCGGGACTTCAAAGAAAGGATATGATTTCATCTTATTTAAGTCTTATGGTTCAAGAAAAAAGTTTAGATAAAATAAGTTCAGAATTAGGCATCAAT
AAAAAGACAGCCTTTGATTGGCGTCATAAGATATTAGCTTCATTCGATACTAAAAATGACGATGACCAAGACAACTTTACAGGTATTACAGAGAGTGACG
AAACCTTTTTCCTAAGATCAGAAAAAGGTATGGAGGTAAAAGATAGGGAATCAAGAAAAAGAGGCGGTAAGTCTAAAAAGAGAGGTATAAGTAAAGATCA
AGTTGCGGTAATTGTAACACAGGATAGAAAATCAACATTAGACCTTAGCGTGGCTAAACTCGGTCGAATAGGAAAAGTAGATATAGAAAATGCTATCGGT
AAACGTGTTATAAAGGATATAACCATATTGTGTAGCGATGCCCATCACAGTTATAAAGGGTTTGCCAAAGATAGCGAAACAGAGTTCCACATCGTAAATG
CATCAAAAGGAGAAAGAGTAAAAGGAAAGTATCACATACAACACGTTAATTCTACTCACAATAGAGTTAAAAAATGGATTGAAAATACCTTTTGGGGAGT
ATCAACAAAATATCTACAACAATATATGAATTGGTATCGAATAAAGGAAAATATAAAGTCTAGAAGCGATAGAGCCAACGCCTTTGTGGAAGAAACAATT
GCTCTAGGTACATTGAAACGGTATAATCAAATCGAATCTAGATATGAAAACTTAATATCAACGCAGACCTAAACTAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1032 bp | 343 aa | 41 | 1072 | + | No |
Chemistry : DDE
ORF sequence :
MNIDNLKEEILSLSTLDRDNLLKDITDSLEHNQLVERASRRHILDNKMGGCPHCLHEKYVRFGVDKGSQRYKCKSCNRSFTEYTGTWMAGLQRKDMISSY
LSLMVQEKSLDKISSELGINKKTAFDWRHKILASFDTKNDDDQDNFTGITESDETFFLRSEKGMEVKDRESRKRGGKSKKRGISKDQVAVIVTQDRKSTL
DLSVAKLGRIGKVDIENAIGKRVIKDITILCSDAHHSYKGFAKDSETEFHIVNASKGERVKGKYHIQHVNSTHNRVKKWIENTFWGVSTKYLQQYMNWYR
IKENIKSRSDRANAFVEETIALGTLKRYNQIESRYENLISTQT
LSLMVQEKSLDKISSELGINKKTAFDWRHKILASFDTKNDDDQDNFTGITESDETFFLRSEKGMEVKDRESRKRGGKSKKRGISKDQVAVIVTQDRKSTL
DLSVAKLGRIGKVDIENAIGKRVIKDITILCSDAHHSYKGFAKDSETEFHIVNASKGERVKGKYHIQHVNSTHNRVKKWIENTFWGVSTKYLQQYMNWYR
IKENIKSRSDRANAFVEETIALGTLKRYNQIESRYENLISTQT
Blast result :
Comments
ISPto1 is 60% aa similar to ISBwe1.
References
1] Bowman,J., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission GenBank.