ISMva1

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008726 ND Mycobacterium vanbaalenii
Mycobacterium vanbaalenii PYR-1
DNA section
IS Length : 1093 bp

Ends


IR Length : 23/24

IRL : ACTGCTTATCTACTTAAGTGGACCTATGCTGGTCAGCATGGGTATCCAGG
IRR : ACTGCTTATCTGCTTAAGTGGACCGAGATGTCAGAATTCTCCGTGGGTGT

Insertion site


Left flankDirect repeatRight flankDR Length
CCATTGCATCGAACATGTGTTCGATTTTAAGC8
TGCGATAATCGAATGTATGTTCGGTTCGGTGT8
CGCTAGAATCGAACGTATGTTCGCATACGCGG8
GTCGGTGGTCGAATGTATGTTCGAGCTATGTC8
ATCTATGCTCGAACATGTGTTCGATGAGTCGG8
ACACTTCATCGAACATATGATCGAATCGTGGC8
CACCGCTGTCGAAGGCATGTTCGACCACCGAC8

DNA sequence

ACTGCTTATCTACTTAAGTGGACCTATGCTGGTCAGCATGGGTATCCAGGGCGCTCCCGTGGGTGGTGTGGACTATCCACGGACCTACCAGGAATTCCGG
GAGTGGTTCCCCGACGATGCCTCGTGCGCAGCGTATTTGGCCCGTTTGCGCTGGCCAGACGGCTTTCGATGTCCATCGTGCGACCACGATCGGGCGTGGC
AAACCTCGACCCGACACTGGAAATGCGTGAGCTGCGGCCGCAAGACCTCCGTCACGGCGGGCACCATTTTTCATCGCACCCGGACCCCGTTGAGTACGTG
GTTCGCCGCCATCTGGTTGGTCACCTCGCAGAAGAACGGTGCATCAGCCAAGAATCTGCACGACATGCTCGGCTTGGGCTCTTACGAGACCGCCTGGGCG
TGGCTGCACAAACTGCGCCGGGCCATGGTGCGCCCTGACCGAGAATTGCTCAGCGACGTCGTTGAAGTCGACGAGTCTTTCGTCGGCGGCCGCGCCACCG
GCAAGCTAGGGGCCTCCACCAGCAAGGCGCCAGTCATGATTGCGGTGGAAAACCTTGGGCCGCAAGTGAATCGAAAGCTTCGGCTAGGCCGCGTCCGACT
CGGCGTGGCAGACTCTCCAGGCTCGAAACAGCTCGTCGACTTCGCCCGCACGACCGTCGAACCTGGCTCCGTCATCCGCACCGACGGCGCCCGCATGTTC
CGCACCCTGGCCAGCGAAGGCTTCAAACACGAGTACATCTCCGGTTACAGCTCACCAGAGCCCGGCCACGTCACCCTGCCGGGGCCACACCGGGTGGCCT
CATTGCTCAAGCGCTGGAACGCCGGCACTCATCACTACCGCGTCGAACGCGAGCACCTGCAGTACTACCTCGACGAATTCACTTTCCGGTTCAACCGACG
CAGATCATCCGCCCGCGGCATGCTCTTCTACCGGCTGCTGCAGCAAAGCGTCAACACCGACCCTCACCCGCTGGCCGAACTGGTAAGCCGCACGTCAGAG
CTGTTCCCGCTCAACGACAATGCCGCCGAATTCGTGCCCAGCGACACCCACGGAGAATTCTGACATCTCGGTCCACTTAAGCAGATAAGCAGT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1005 bp334 aa591063+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGGVDYPRTYQEFREWFPDDASCAAYLARLRWPDGFRCPSCDHDRAWQTSTRHWKCVSCGRKTSVTAGTIFHRTRTPLSTWFAAIWLVTSQKNGASAKNL
HDMLGLGSYETAWAWLHKLRRAMVRPDRELLSDVVEVDESFVGGRATGKLGASTSKAPVMIAVENLGPQVNRKLRLGRVRLGVADSPGSKQLVDFARTTV
EPGSVIRTDGARMFRTLASEGFKHEYISGYSSPEPGHVTLPGPHRVASLLKRWNAGTHHYRVEREHLQYYLDEFTFRFNRRRSSARGMLFYRLLQQSVNT
DPHPLAELVSRTSELFPLNDNAAEFVPSDTHGEF

 

Blast result :
Comments
ISMva1 is 96% aa similar to ISMysp2.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. (2006) Direct submission GenBank.