ISNmo1
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAOF01000004 | ND | Nitrococcus mobilis | Nitrococcus mobilis Nb-231 |
DNA section
IS Length : 1114 bp
Ends
IR Length : 21/24
IRL : CGTGCTTATCCGGTTGTCTCCCACGCCCACCACCGATAGTATATTGAGCC
IRR : CGTGCTTATCCGGTTAGCTCCCAGAGCTACTAGATGTAGTGGGCCGAGAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GACGGGATTACCCAAA | GGATGATC | ATCCGGGGTTGTGA | 8 |
DNA sequence
CGTGCTTATCCGGTTGTCTCCCACGCCCACCACCGATAGTATATTGAGCCTCTGCATCACACTGGAGCAACCGTGGCTTTCGAGGTGTTTGAGCGGGATG
ATTTGCGGTTCCCACGCTCGTTGTCGGAATTTCAGCGCCTCTTTCCGGATGAGGCGGCTTGCGCTGCCTATCTTGAACACGCCCGATGGAGCGACGGGTT
CGCGTGCCGTCACTGTGGGGTGGCTGATGAGCCATATCGCTTTGCCAATCGTTCCGGCGTTCTTCGATGTCGCCATTGCGGCCGCGACACCAGCCTTACC
GCAGGCACCGTCATGGAGCGCACGCACACGCCGCTCTCGGTGTGGTTCTGGGCGGCTTACTTGGTGGCCAGCCAAACGCCGGGCATATCGGCCGTGCAGT
TCCAGCGGCAACTCGGATTGTCGCGCTACGAGACCGCCTTCCAGATTCTTCACAAGCTTCGCGTCGGCATGGTTCGTCCCGATCAGGATCGAATCGGCGG
AAGGGCGGAAGAAGTCGTCGAGGCCGATGAAACCTGGGTGGGTGGCCGTACGCGCGGCAAGGGACGGGGCGTTCATGACATGGCGATCGTGGCTGGTGCC
GTCGAAGTCCGCCAGCGCAAACGCTCTGACAGCAGCCTCAACAAGCGGAAGAGCGGGCGTTATGCTGGCCGTGTGCGCCTGACTCTGGTTCCAGACCGCA
GCGCCCGATCGCTCGGCCGCTTCATCGAGAGCGCCGTGGCACCGGGCACAAGAATCATTACCGATGACTGGAGCGGGTACGCTGGCTTGGCTTCGCGCAA
CTATCTCCACACCGCCGTCGCGCAGCGGGGTGATCCACAGGTTGCCGAAGAGTTCATGCCCATCATTCATCTCGTATTCTCAAATCTCAAGACCTGGCTG
TGCGGTATCCATCATGGAGTCAGTCCGCAGCATCTACAGGCGTACCTCGATGAGTTCACCTTTCGCTTCAACCGCCGTTTCTACCCGTTCAACGCATTCC
GCTCCCTGCTTGGCATTGCGGGTGATGTCACCGCGCTAACCTACGCCGAGCTTTACGCCGAAAAGTCTCGGCCCACTACATCTAGTAGCTCTGGGAGCTA
ACCGGATAAGCACG
ATTTGCGGTTCCCACGCTCGTTGTCGGAATTTCAGCGCCTCTTTCCGGATGAGGCGGCTTGCGCTGCCTATCTTGAACACGCCCGATGGAGCGACGGGTT
CGCGTGCCGTCACTGTGGGGTGGCTGATGAGCCATATCGCTTTGCCAATCGTTCCGGCGTTCTTCGATGTCGCCATTGCGGCCGCGACACCAGCCTTACC
GCAGGCACCGTCATGGAGCGCACGCACACGCCGCTCTCGGTGTGGTTCTGGGCGGCTTACTTGGTGGCCAGCCAAACGCCGGGCATATCGGCCGTGCAGT
TCCAGCGGCAACTCGGATTGTCGCGCTACGAGACCGCCTTCCAGATTCTTCACAAGCTTCGCGTCGGCATGGTTCGTCCCGATCAGGATCGAATCGGCGG
AAGGGCGGAAGAAGTCGTCGAGGCCGATGAAACCTGGGTGGGTGGCCGTACGCGCGGCAAGGGACGGGGCGTTCATGACATGGCGATCGTGGCTGGTGCC
GTCGAAGTCCGCCAGCGCAAACGCTCTGACAGCAGCCTCAACAAGCGGAAGAGCGGGCGTTATGCTGGCCGTGTGCGCCTGACTCTGGTTCCAGACCGCA
GCGCCCGATCGCTCGGCCGCTTCATCGAGAGCGCCGTGGCACCGGGCACAAGAATCATTACCGATGACTGGAGCGGGTACGCTGGCTTGGCTTCGCGCAA
CTATCTCCACACCGCCGTCGCGCAGCGGGGTGATCCACAGGTTGCCGAAGAGTTCATGCCCATCATTCATCTCGTATTCTCAAATCTCAAGACCTGGCTG
TGCGGTATCCATCATGGAGTCAGTCCGCAGCATCTACAGGCGTACCTCGATGAGTTCACCTTTCGCTTCAACCGCCGTTTCTACCCGTTCAACGCATTCC
GCTCCCTGCTTGGCATTGCGGGTGATGTCACCGCGCTAACCTACGCCGAGCTTTACGCCGAAAAGTCTCGGCCCACTACATCTAGTAGCTCTGGGAGCTA
ACCGGATAAGCACG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1029 bp | 342 aa | 73 | 1101 | + | No |
Chemistry : DDE
ORF sequence :
MAFEVFERDDLRFPRSLSEFQRLFPDEAACAAYLEHARWSDGFACRHCGVADEPYRFANRSGVLRCRHCGRDTSLTAGTVMERTHTPLSVWFWAAYLVAS
QTPGISAVQFQRQLGLSRYETAFQILHKLRVGMVRPDQDRIGGRAEEVVEADETWVGGRTRGKGRGVHDMAIVAGAVEVRQRKRSDSSLNKRKSGRYAGR
VRLTLVPDRSARSLGRFIESAVAPGTRIITDDWSGYAGLASRNYLHTAVAQRGDPQVAEEFMPIIHLVFSNLKTWLCGIHHGVSPQHLQAYLDEFTFRFN
RRFYPFNAFRSLLGIAGDVTALTYAELYAEKSRPTTSSSSGS
QTPGISAVQFQRQLGLSRYETAFQILHKLRVGMVRPDQDRIGGRAEEVVEADETWVGGRTRGKGRGVHDMAIVAGAVEVRQRKRSDSSLNKRKSGRYAGR
VRLTLVPDRSARSLGRFIESAVAPGTRIITDDWSGYAGLASRNYLHTAVAQRGDPQVAEEFMPIIHLVFSNLKTWLCGIHHGVSPQHLQAYLDEFTFRFN
RRFYPFNAFRSLLGIAGDVTALTYAELYAEKSRPTTSSSSGS
Blast result :
Comments
ISNmo1 is 54% aa similar to ISPosp3.
References
1] Waterbury,J., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission Genbank.