ISNmo1

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAOF01000004 ND Nitrococcus mobilis
Nitrococcus mobilis Nb-231
DNA section
IS Length : 1114 bp

Ends


IR Length : 21/24

IRL : CGTGCTTATCCGGTTGTCTCCCACGCCCACCACCGATAGTATATTGAGCC
IRR : CGTGCTTATCCGGTTAGCTCCCAGAGCTACTAGATGTAGTGGGCCGAGAC

Insertion site


Left flankDirect repeatRight flankDR Length
GACGGGATTACCCAAAGGATGATCATCCGGGGTTGTGA8

DNA sequence

CGTGCTTATCCGGTTGTCTCCCACGCCCACCACCGATAGTATATTGAGCCTCTGCATCACACTGGAGCAACCGTGGCTTTCGAGGTGTTTGAGCGGGATG
ATTTGCGGTTCCCACGCTCGTTGTCGGAATTTCAGCGCCTCTTTCCGGATGAGGCGGCTTGCGCTGCCTATCTTGAACACGCCCGATGGAGCGACGGGTT
CGCGTGCCGTCACTGTGGGGTGGCTGATGAGCCATATCGCTTTGCCAATCGTTCCGGCGTTCTTCGATGTCGCCATTGCGGCCGCGACACCAGCCTTACC
GCAGGCACCGTCATGGAGCGCACGCACACGCCGCTCTCGGTGTGGTTCTGGGCGGCTTACTTGGTGGCCAGCCAAACGCCGGGCATATCGGCCGTGCAGT
TCCAGCGGCAACTCGGATTGTCGCGCTACGAGACCGCCTTCCAGATTCTTCACAAGCTTCGCGTCGGCATGGTTCGTCCCGATCAGGATCGAATCGGCGG
AAGGGCGGAAGAAGTCGTCGAGGCCGATGAAACCTGGGTGGGTGGCCGTACGCGCGGCAAGGGACGGGGCGTTCATGACATGGCGATCGTGGCTGGTGCC
GTCGAAGTCCGCCAGCGCAAACGCTCTGACAGCAGCCTCAACAAGCGGAAGAGCGGGCGTTATGCTGGCCGTGTGCGCCTGACTCTGGTTCCAGACCGCA
GCGCCCGATCGCTCGGCCGCTTCATCGAGAGCGCCGTGGCACCGGGCACAAGAATCATTACCGATGACTGGAGCGGGTACGCTGGCTTGGCTTCGCGCAA
CTATCTCCACACCGCCGTCGCGCAGCGGGGTGATCCACAGGTTGCCGAAGAGTTCATGCCCATCATTCATCTCGTATTCTCAAATCTCAAGACCTGGCTG
TGCGGTATCCATCATGGAGTCAGTCCGCAGCATCTACAGGCGTACCTCGATGAGTTCACCTTTCGCTTCAACCGCCGTTTCTACCCGTTCAACGCATTCC
GCTCCCTGCTTGGCATTGCGGGTGATGTCACCGCGCTAACCTACGCCGAGCTTTACGCCGAAAAGTCTCGGCCCACTACATCTAGTAGCTCTGGGAGCTA
ACCGGATAAGCACG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1029 bp342 aa731101+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAFEVFERDDLRFPRSLSEFQRLFPDEAACAAYLEHARWSDGFACRHCGVADEPYRFANRSGVLRCRHCGRDTSLTAGTVMERTHTPLSVWFWAAYLVAS
QTPGISAVQFQRQLGLSRYETAFQILHKLRVGMVRPDQDRIGGRAEEVVEADETWVGGRTRGKGRGVHDMAIVAGAVEVRQRKRSDSSLNKRKSGRYAGR
VRLTLVPDRSARSLGRFIESAVAPGTRIITDDWSGYAGLASRNYLHTAVAQRGDPQVAEEFMPIIHLVFSNLKTWLCGIHHGVSPQHLQAYLDEFTFRFN
RRFYPFNAFRSLLGIAGDVTALTYAELYAEKSRPTTSSSSGS

 

Blast result :
Comments
ISNmo1 is 54% aa similar to ISPosp3.
References
1] Waterbury,J., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission Genbank.