ISSysp1

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AANO01000003.1 ND Synechococcus sp.
Synechococcus sp. WH 5701
DNA section
IS Length : 1032 bp

Ends


IR Length : 21/22

IRL : CTTGATTAGGTAGCAAGCTCCGTCAGCCGGCTTTGTCGCATAAGCTGGTA
IRR : CTTGATTAGGTAGCAAACTCCGCGCTCCTCAGGAGGTGCTCCGGCCGTGC

Insertion site


Left flankDirect repeatRight flankDR Length
TCGACTTCAAAGCCATTAGAGATTTTATCCAGAAT6

DNA sequence

CTTGATTAGGTAGCAAGCTCCGTCAGCCGGCTTTGTCGCATAAGCTGGTACGTGTGTACCAGGGGTGATTGGCATGGCTATGAATCGGATTCAGTTCCAG
GCCAGCCTGTCGCTGCCCAAGTTCATCGAGCTCTACGGCACCGAGGAGAATTGCGAGGCCGCCCTGGAGCAGGCGCGCTGGCCCGACGGCTTCAGATGCC
CCCGTTGTGAGGGCAAGGAGTATGGGCTCATCGGTGGCCGTCGCCACAAGCGCTATCAGTGCCGGAGCTGCCGCCATCAGGCCACCCTCACGGCCGGCAC
CATCATGGAGGCGACCAAGTTACCGCTGACCACCTGGTTCCTGGCTTTCTATCTGGTGGGCCAGGCCAAGACTGGCATTTCTTCCCTCGCCCTGATGCGC
CATCTCGGGGTGAACTACCGAACAGCGTGGCTGGTTCACAACAAGATCATGCAGGCGATGAGCGAGCGGGAGGAGGCCTATGTCCTGCGGGGAAAGGTGC
AGGTGGATGATGCCTACCTTGGCGGAGAACGCTGTGGTGGCAAGGCAGGACTGGGATCGGAGAACAAGGTGCCGATTGTGGCGGCCGTCTCTCTCGATGA
TGCGGGCCACCCCCGGCACGTGAAGCTTGCCACCGTGGCCACGTTCTCCTTTGCCGCCATCGCTGACTGGGCTCAAGATGCACTGGCGATTGGATGTGAG
GTGATCTCTGACGGACTTGCCTGCTTCCGTGCCGTAGCAGAAGTCGGTTGCTTTCATCAAGCTGTGGTCGTGAAGGGGCGCCATCCCAACGAACTGCCTG
AATTCCGCTGGATCAACACGGTACTCAGTAACTTGAAAACCAGCTTCAGCGGAACGTTCCATGCTCTGCGATTCGATAAATACGCAGACCGCTACCTGGG
CGCCTTCAATTACCGTTTCAACCGGCGCTTCAACTTGGGAGAGATGACCGAGCGGGTGGTTCATGCCATCTGCAGCTGCACCGCACGGCCGGAGCACCTC
CTGAGGAGCGCGGAGTTTGCTACCTAATCAAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
948 bp315 aa801027+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNRIQFQASLSLPKFIELYGTEENCEAALEQARWPDGFRCPRCEGKEYGLIGGRRHKRYQCRSCRHQATLTAGTIMEATKLPLTTWFLAFYLVGQAKTGI
SSLALMRHLGVNYRTAWLVHNKIMQAMSEREEAYVLRGKVQVDDAYLGGERCGGKAGLGSENKVPIVAAVSLDDAGHPRHVKLATVATFSFAAIADWAQD
ALAIGCEVISDGLACFRAVAEVGCFHQAVVVKGRHPNELPEFRWINTVLSNLKTSFSGTFHALRFDKYADRYLGAFNYRFNRRFNLGEMTERVVHAICSC
TARPEHLLRSAEFAT

 

Blast result :
Comments
ISSysp1 is 64% aa similar to ISGur2.
References
1] Scanlan,D., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission Genbank