ISSysp1
- Family IS1595
- Group IS1595
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AANO01000003.1 | ND | Synechococcus sp. | Synechococcus sp. WH 5701 |
DNA section
IS Length : 1032 bp
Ends
IR Length : 21/22
IRL : CTTGATTAGGTAGCAAGCTCCGTCAGCCGGCTTTGTCGCATAAGCTGGTA
IRR : CTTGATTAGGTAGCAAACTCCGCGCTCCTCAGGAGGTGCTCCGGCCGTGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCGACTTCAAAGCCATT | AGAGAT | TTTATCCAGAAT | 6 |
DNA sequence
CTTGATTAGGTAGCAAGCTCCGTCAGCCGGCTTTGTCGCATAAGCTGGTACGTGTGTACCAGGGGTGATTGGCATGGCTATGAATCGGATTCAGTTCCAG
GCCAGCCTGTCGCTGCCCAAGTTCATCGAGCTCTACGGCACCGAGGAGAATTGCGAGGCCGCCCTGGAGCAGGCGCGCTGGCCCGACGGCTTCAGATGCC
CCCGTTGTGAGGGCAAGGAGTATGGGCTCATCGGTGGCCGTCGCCACAAGCGCTATCAGTGCCGGAGCTGCCGCCATCAGGCCACCCTCACGGCCGGCAC
CATCATGGAGGCGACCAAGTTACCGCTGACCACCTGGTTCCTGGCTTTCTATCTGGTGGGCCAGGCCAAGACTGGCATTTCTTCCCTCGCCCTGATGCGC
CATCTCGGGGTGAACTACCGAACAGCGTGGCTGGTTCACAACAAGATCATGCAGGCGATGAGCGAGCGGGAGGAGGCCTATGTCCTGCGGGGAAAGGTGC
AGGTGGATGATGCCTACCTTGGCGGAGAACGCTGTGGTGGCAAGGCAGGACTGGGATCGGAGAACAAGGTGCCGATTGTGGCGGCCGTCTCTCTCGATGA
TGCGGGCCACCCCCGGCACGTGAAGCTTGCCACCGTGGCCACGTTCTCCTTTGCCGCCATCGCTGACTGGGCTCAAGATGCACTGGCGATTGGATGTGAG
GTGATCTCTGACGGACTTGCCTGCTTCCGTGCCGTAGCAGAAGTCGGTTGCTTTCATCAAGCTGTGGTCGTGAAGGGGCGCCATCCCAACGAACTGCCTG
AATTCCGCTGGATCAACACGGTACTCAGTAACTTGAAAACCAGCTTCAGCGGAACGTTCCATGCTCTGCGATTCGATAAATACGCAGACCGCTACCTGGG
CGCCTTCAATTACCGTTTCAACCGGCGCTTCAACTTGGGAGAGATGACCGAGCGGGTGGTTCATGCCATCTGCAGCTGCACCGCACGGCCGGAGCACCTC
CTGAGGAGCGCGGAGTTTGCTACCTAATCAAG
GCCAGCCTGTCGCTGCCCAAGTTCATCGAGCTCTACGGCACCGAGGAGAATTGCGAGGCCGCCCTGGAGCAGGCGCGCTGGCCCGACGGCTTCAGATGCC
CCCGTTGTGAGGGCAAGGAGTATGGGCTCATCGGTGGCCGTCGCCACAAGCGCTATCAGTGCCGGAGCTGCCGCCATCAGGCCACCCTCACGGCCGGCAC
CATCATGGAGGCGACCAAGTTACCGCTGACCACCTGGTTCCTGGCTTTCTATCTGGTGGGCCAGGCCAAGACTGGCATTTCTTCCCTCGCCCTGATGCGC
CATCTCGGGGTGAACTACCGAACAGCGTGGCTGGTTCACAACAAGATCATGCAGGCGATGAGCGAGCGGGAGGAGGCCTATGTCCTGCGGGGAAAGGTGC
AGGTGGATGATGCCTACCTTGGCGGAGAACGCTGTGGTGGCAAGGCAGGACTGGGATCGGAGAACAAGGTGCCGATTGTGGCGGCCGTCTCTCTCGATGA
TGCGGGCCACCCCCGGCACGTGAAGCTTGCCACCGTGGCCACGTTCTCCTTTGCCGCCATCGCTGACTGGGCTCAAGATGCACTGGCGATTGGATGTGAG
GTGATCTCTGACGGACTTGCCTGCTTCCGTGCCGTAGCAGAAGTCGGTTGCTTTCATCAAGCTGTGGTCGTGAAGGGGCGCCATCCCAACGAACTGCCTG
AATTCCGCTGGATCAACACGGTACTCAGTAACTTGAAAACCAGCTTCAGCGGAACGTTCCATGCTCTGCGATTCGATAAATACGCAGACCGCTACCTGGG
CGCCTTCAATTACCGTTTCAACCGGCGCTTCAACTTGGGAGAGATGACCGAGCGGGTGGTTCATGCCATCTGCAGCTGCACCGCACGGCCGGAGCACCTC
CTGAGGAGCGCGGAGTTTGCTACCTAATCAAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
948 bp | 315 aa | 80 | 1027 | + | No |
Chemistry : DDE
ORF sequence :
MNRIQFQASLSLPKFIELYGTEENCEAALEQARWPDGFRCPRCEGKEYGLIGGRRHKRYQCRSCRHQATLTAGTIMEATKLPLTTWFLAFYLVGQAKTGI
SSLALMRHLGVNYRTAWLVHNKIMQAMSEREEAYVLRGKVQVDDAYLGGERCGGKAGLGSENKVPIVAAVSLDDAGHPRHVKLATVATFSFAAIADWAQD
ALAIGCEVISDGLACFRAVAEVGCFHQAVVVKGRHPNELPEFRWINTVLSNLKTSFSGTFHALRFDKYADRYLGAFNYRFNRRFNLGEMTERVVHAICSC
TARPEHLLRSAEFAT
SSLALMRHLGVNYRTAWLVHNKIMQAMSEREEAYVLRGKVQVDDAYLGGERCGGKAGLGSENKVPIVAAVSLDDAGHPRHVKLATVATFSFAAIADWAQD
ALAIGCEVISDGLACFRAVAEVGCFHQAVVVKGRHPNELPEFRWINTVLSNLKTSFSGTFHALRFDKYADRYLGAFNYRFNRRFNLGEMTERVVHAICSC
TARPEHLLRSAEFAT
Blast result :
Comments
ISSysp1 is 64% aa similar to ISGur2.
References
1] Scanlan,D., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission Genbank