ISPpr5
- Family IS1595
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CR378664 | ND | Photobacterium profundum | Photobacterium profundum SS9 |
DNA section
IS Length : 973 bp
Ends
IR Length : 18/23
IRL : CATGCCTCTGCACATGAGTCAGTTTGGCCTATATTCTTAGTATCAATCAC
IRR : CATGCCTGTGCACTTAGCTCAGTACGAATGTATAGGTGCGTGAATAATTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTCAACACTA | TTATTTAA | AGACCTTTACG | 8 |
DNA sequence
CATGCCTCTGCACATGAGTCAGTTTGGCCTATATTCTTAGTATCAATCACGCTTAAAAGTGCAGTGTGCTATGAAAATGCCAGAAGCTAGCTTTTTTGAA
TGGCAACGCCAGTTTGGGACTGAAGCTGATTGCTTAAATCACCTTAAGCAGATGAGATGGCCCAATGGCTTTGTTTGCCCTACGTGTGGTTGTGACCACG
GATATGACGTGACAACTCGTAATACCTATGAGTGCAGCCAATGTCATAAACAAACCTCGATAACCGCCGACACCTTATTTCATGGTAGCCGTATTCCGTT
AACTAAATGGCTCTGGGCTATTTACTTTCTAGGCTCAGATAAAGGCAGCATTTCAGCATTAAGACTTAGCAAGCTCATCGAGGTTAACTGGCGAACGGCA
CGATTGATTCTGAGTAAATTGAGAACAGCAATGGGTCATAGAGATAGCCTGTATCGGCTTTCAGGTGTTATAGAAATTGATGACGCCTTGGTAGGAGGCA
GGAGAAAAGGTAAGCGTGGCCGTGGCGCTGAAGGAAAGACTCCCGTTATAGTAGCGGTTGAAAGCAAAGGCAAAAGAGCCGGTTTTATTGCAATGCAGGC
AGTAGACAGTGTTTGCCATGATACAGTGAACAAGTTTGTTGCTAAGCACTTAAATGAGCAGCAAGAAGTCCATACTGATGCGCTACCTGCGCTGAATATT
ATAGACAACACTCAACAACATGAAGCCAAGGTTACTCCCAGTGAGTTGGTTGATGAGTGGCTTCCCTGGGTTCATATAGCCATCGGTAACTTAAAAACAT
TTTTGCTTGGCACTTTTCATGGTGTGTCGGGACAATACTTGCAAGAATACCTTGATGAATTCTGTTACCGCTTCAATCGAAGGAAAATGGAAAGAGAGAT
CCCTAATAGGTTATTAAACCTCGCAATTATTCACGCACCTATACATTCGTACTGAGCTAAGTGCACAGGCATG
TGGCAACGCCAGTTTGGGACTGAAGCTGATTGCTTAAATCACCTTAAGCAGATGAGATGGCCCAATGGCTTTGTTTGCCCTACGTGTGGTTGTGACCACG
GATATGACGTGACAACTCGTAATACCTATGAGTGCAGCCAATGTCATAAACAAACCTCGATAACCGCCGACACCTTATTTCATGGTAGCCGTATTCCGTT
AACTAAATGGCTCTGGGCTATTTACTTTCTAGGCTCAGATAAAGGCAGCATTTCAGCATTAAGACTTAGCAAGCTCATCGAGGTTAACTGGCGAACGGCA
CGATTGATTCTGAGTAAATTGAGAACAGCAATGGGTCATAGAGATAGCCTGTATCGGCTTTCAGGTGTTATAGAAATTGATGACGCCTTGGTAGGAGGCA
GGAGAAAAGGTAAGCGTGGCCGTGGCGCTGAAGGAAAGACTCCCGTTATAGTAGCGGTTGAAAGCAAAGGCAAAAGAGCCGGTTTTATTGCAATGCAGGC
AGTAGACAGTGTTTGCCATGATACAGTGAACAAGTTTGTTGCTAAGCACTTAAATGAGCAGCAAGAAGTCCATACTGATGCGCTACCTGCGCTGAATATT
ATAGACAACACTCAACAACATGAAGCCAAGGTTACTCCCAGTGAGTTGGTTGATGAGTGGCTTCCCTGGGTTCATATAGCCATCGGTAACTTAAAAACAT
TTTTGCTTGGCACTTTTCATGGTGTGTCGGGACAATACTTGCAAGAATACCTTGATGAATTCTGTTACCGCTTCAATCGAAGGAAAATGGAAAGAGAGAT
CCCTAATAGGTTATTAAACCTCGCAATTATTCACGCACCTATACATTCGTACTGAGCTAAGTGCACAGGCATG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
885 bp | 294 aa | 71 | 955 | + | No |
Chemistry : DDE
ORF sequence :
MKMPEASFFEWQRQFGTEADCLNHLKQMRWPNGFVCPTCGCDHGYDVTTRNTYECSQCHKQTSITADTLFHGSRIPLTKWLWAIYFLGSDKGSISALRLS
KLIEVNWRTARLILSKLRTAMGHRDSLYRLSGVIEIDDALVGGRRKGKRGRGAEGKTPVIVAVESKGKRAGFIAMQAVDSVCHDTVNKFVAKHLNEQQEV
HTDALPALNIIDNTQQHEAKVTPSELVDEWLPWVHIAIGNLKTFLLGTFHGVSGQYLQEYLDEFCYRFNRRKMEREIPNRLLNLAIIHAPIHSY
KLIEVNWRTARLILSKLRTAMGHRDSLYRLSGVIEIDDALVGGRRKGKRGRGAEGKTPVIVAVESKGKRAGFIAMQAVDSVCHDTVNKFVAKHLNEQQEV
HTDALPALNIIDNTQQHEAKVTPSELVDEWLPWVHIAIGNLKTFLLGTFHGVSGQYLQEYLDEFCYRFNRRKMEREIPNRLLNLAIIHAPIHSY
Blast result :
Comments
ISPpr5 is 53% aa similar to ISHch1.
References
1] Vezzi,A., Campanaro,S., D'Angelo,M., Simonato,F., Vitulo,N., Lauro,F., Cestaro,A., Malacrida,G., Simionati,B., Cannata,N., Bartlett,D. and Valle,G. (2004) Direct submission Genbank