ISPpr5

  • Family IS1595
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CR378664 ND Photobacterium profundum
Photobacterium profundum SS9
DNA section
IS Length : 973 bp

Ends


IR Length : 18/23

IRL : CATGCCTCTGCACATGAGTCAGTTTGGCCTATATTCTTAGTATCAATCAC
IRR : CATGCCTGTGCACTTAGCTCAGTACGAATGTATAGGTGCGTGAATAATTG

Insertion site


Left flankDirect repeatRight flankDR Length
TTCAACACTATTATTTAAAGACCTTTACG8

DNA sequence

CATGCCTCTGCACATGAGTCAGTTTGGCCTATATTCTTAGTATCAATCACGCTTAAAAGTGCAGTGTGCTATGAAAATGCCAGAAGCTAGCTTTTTTGAA
TGGCAACGCCAGTTTGGGACTGAAGCTGATTGCTTAAATCACCTTAAGCAGATGAGATGGCCCAATGGCTTTGTTTGCCCTACGTGTGGTTGTGACCACG
GATATGACGTGACAACTCGTAATACCTATGAGTGCAGCCAATGTCATAAACAAACCTCGATAACCGCCGACACCTTATTTCATGGTAGCCGTATTCCGTT
AACTAAATGGCTCTGGGCTATTTACTTTCTAGGCTCAGATAAAGGCAGCATTTCAGCATTAAGACTTAGCAAGCTCATCGAGGTTAACTGGCGAACGGCA
CGATTGATTCTGAGTAAATTGAGAACAGCAATGGGTCATAGAGATAGCCTGTATCGGCTTTCAGGTGTTATAGAAATTGATGACGCCTTGGTAGGAGGCA
GGAGAAAAGGTAAGCGTGGCCGTGGCGCTGAAGGAAAGACTCCCGTTATAGTAGCGGTTGAAAGCAAAGGCAAAAGAGCCGGTTTTATTGCAATGCAGGC
AGTAGACAGTGTTTGCCATGATACAGTGAACAAGTTTGTTGCTAAGCACTTAAATGAGCAGCAAGAAGTCCATACTGATGCGCTACCTGCGCTGAATATT
ATAGACAACACTCAACAACATGAAGCCAAGGTTACTCCCAGTGAGTTGGTTGATGAGTGGCTTCCCTGGGTTCATATAGCCATCGGTAACTTAAAAACAT
TTTTGCTTGGCACTTTTCATGGTGTGTCGGGACAATACTTGCAAGAATACCTTGATGAATTCTGTTACCGCTTCAATCGAAGGAAAATGGAAAGAGAGAT
CCCTAATAGGTTATTAAACCTCGCAATTATTCACGCACCTATACATTCGTACTGAGCTAAGTGCACAGGCATG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
885 bp294 aa71955+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKMPEASFFEWQRQFGTEADCLNHLKQMRWPNGFVCPTCGCDHGYDVTTRNTYECSQCHKQTSITADTLFHGSRIPLTKWLWAIYFLGSDKGSISALRLS
KLIEVNWRTARLILSKLRTAMGHRDSLYRLSGVIEIDDALVGGRRKGKRGRGAEGKTPVIVAVESKGKRAGFIAMQAVDSVCHDTVNKFVAKHLNEQQEV
HTDALPALNIIDNTQQHEAKVTPSELVDEWLPWVHIAIGNLKTFLLGTFHGVSGQYLQEYLDEFCYRFNRRKMEREIPNRLLNLAIIHAPIHSY

 

Blast result :
Comments
ISPpr5 is 53% aa similar to ISHch1.
References
1] Vezzi,A., Campanaro,S., D'Angelo,M., Simonato,F., Vitulo,N., Lauro,F., Cestaro,A., Malacrida,G., Simionati,B., Cannata,N., Bartlett,D. and Valle,G. (2004) Direct submission Genbank