ISHch1
- Family IS1595
- Group IS1595
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007645 | ND | Hahella chejuensis | Hahella chejuensis KCTC 2396 |
DNA section
IS Length : 1037 bp
Ends
IR Length : 18/22
IRL : CCTAATCCTAATTACCATCCTTCCTAAGTCATGCTATGCTGTATATATAT
IRR : CCTAATTACCACTCAACCTAAGCCGATCTTCAGAAGCTTTTCTGGCATTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCTATCAGTGTATGGGGA | AATGCATA | AGTATCTAAAT | 8 |
DNA sequence
CCTAATCCTAATTACCATCCTTCCTAAGTCATGCTATGCTGTATATATATACAGTTAAATGCTTGATTTCACAGGAGGCCTCCATGGCACGAAACAAAGT
GCAGTTTCAAAAAGGCTACAGTCTGGGCGAATTCTTTCAAGCCTATGGTACTGAAGGGCAGTGTTTCGATGCGTTATTCCAGTGGCGATGGCCCAACGGC
TTTCAATGCCCGTTTTGTGCCCATGATCAGTATTGCAAGTTGACTCAGCGCCAACTGCTGCAATGCAATCGGTGTCGTCGGCAAACCTCCATTACTGCCG
GAACTATTTTACAGTCCACTAAGCTGCCTCTGACGCTCTGGTTTCAAGCTATGTACCTGATCACTCAGGACAAAAAAGGGCTTTCCGCAATGAGGCTTCA
TCGGCAGTTGGGCATATCCTACAACGCCGCCTGGCGCCTGAAGCATAAGCTCATGCAAGTCATGATGGAACGCGATGATGATCGGAAGCTGGCGGGCTTT
ATCGAAGTGGATGATGCCTATCTGGGCGGTGAACGAGCCGGCGGCAAGCGAGGGCGTGGCGCCGATGCAAAGACGCCTTTCGTCGCAGCCGTGGAGACCA
CGAGTGAAGGCCATCCGACACGCATTCGGTTATCGGTCGTCAAGGGCTTTAAAACCCAGGAGATCTTGAATTGGAGCCAAAAATATCTGGAGGTTGGCAG
TACCGTGATCTCGGATGGCTTGGCCTGTTTCAATGCCGTGTCGGAAATCGGCTGTGCGCATGACCGGATTGTCTGTGGCGGCGGACGAGCCTCCGTGGAA
GAGCCGGAGTTTTACTGGGTAAATACGGTATTAGGTAACTTGAAGACTTCGTTGCGCAGCACCTACCACGCGGTGCGATCCAAATACGCGCAACGCTATT
TATCGGAATTCCAGTATCGATTTAATCGCCGATTTGATCTACGCATCCTAATACCCCGCTTGGCTTATGCGGCTGTCAGGACGCCGCCAATGCCAGAAAA
GCTTCTGAAGATCGGCTTAGGTTGAGTGGTAATTAGG
GCAGTTTCAAAAAGGCTACAGTCTGGGCGAATTCTTTCAAGCCTATGGTACTGAAGGGCAGTGTTTCGATGCGTTATTCCAGTGGCGATGGCCCAACGGC
TTTCAATGCCCGTTTTGTGCCCATGATCAGTATTGCAAGTTGACTCAGCGCCAACTGCTGCAATGCAATCGGTGTCGTCGGCAAACCTCCATTACTGCCG
GAACTATTTTACAGTCCACTAAGCTGCCTCTGACGCTCTGGTTTCAAGCTATGTACCTGATCACTCAGGACAAAAAAGGGCTTTCCGCAATGAGGCTTCA
TCGGCAGTTGGGCATATCCTACAACGCCGCCTGGCGCCTGAAGCATAAGCTCATGCAAGTCATGATGGAACGCGATGATGATCGGAAGCTGGCGGGCTTT
ATCGAAGTGGATGATGCCTATCTGGGCGGTGAACGAGCCGGCGGCAAGCGAGGGCGTGGCGCCGATGCAAAGACGCCTTTCGTCGCAGCCGTGGAGACCA
CGAGTGAAGGCCATCCGACACGCATTCGGTTATCGGTCGTCAAGGGCTTTAAAACCCAGGAGATCTTGAATTGGAGCCAAAAATATCTGGAGGTTGGCAG
TACCGTGATCTCGGATGGCTTGGCCTGTTTCAATGCCGTGTCGGAAATCGGCTGTGCGCATGACCGGATTGTCTGTGGCGGCGGACGAGCCTCCGTGGAA
GAGCCGGAGTTTTACTGGGTAAATACGGTATTAGGTAACTTGAAGACTTCGTTGCGCAGCACCTACCACGCGGTGCGATCCAAATACGCGCAACGCTATT
TATCGGAATTCCAGTATCGATTTAATCGCCGATTTGATCTACGCATCCTAATACCCCGCTTGGCTTATGCGGCTGTCAGGACGCCGCCAATGCCAGAAAA
GCTTCTGAAGATCGGCTTAGGTTGAGTGGTAATTAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
942 bp | 313 aa | 84 | 1025 | + | No |
Chemistry : DDE
ORF sequence :
MARNKVQFQKGYSLGEFFQAYGTEGQCFDALFQWRWPNGFQCPFCAHDQYCKLTQRQLLQCNRCRRQTSITAGTILQSTKLPLTLWFQAMYLITQDKKGL
SAMRLHRQLGISYNAAWRLKHKLMQVMMERDDDRKLAGFIEVDDAYLGGERAGGKRGRGADAKTPFVAAVETTSEGHPTRIRLSVVKGFKTQEILNWSQK
YLEVGSTVISDGLACFNAVSEIGCAHDRIVCGGGRASVEEPEFYWVNTVLGNLKTSLRSTYHAVRSKYAQRYLSEFQYRFNRRFDLRILIPRLAYAAVRT
PPMPEKLLKIGLG
SAMRLHRQLGISYNAAWRLKHKLMQVMMERDDDRKLAGFIEVDDAYLGGERAGGKRGRGADAKTPFVAAVETTSEGHPTRIRLSVVKGFKTQEILNWSQK
YLEVGSTVISDGLACFNAVSEIGCAHDRIVCGGGRASVEEPEFYWVNTVLGNLKTSLRSTYHAVRSKYAQRYLSEFQYRFNRRFDLRILIPRLAYAAVRT
PPMPEKLLKIGLG
Blast result :
Comments
ISHch1 is 73% aa similar to ISKpn3.
References
1] Jeong,H., Yim,J.H., Lee,C., Choi,S.H., Park,Y.K., Yoon,S.H., Hur,C.G., Kang,H.Y., Kim,D., Lee,H.H., Park,K.H., Park,S.H., Park,H.S., Lee,H.K., Oh,T.K. and Kim,J.F. (2005) Nucleic Acids Res. 33 (22), 7066-7073