ISHch1

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007645 ND Hahella chejuensis
Hahella chejuensis KCTC 2396
DNA section
IS Length : 1037 bp

Ends


IR Length : 18/22

IRL : CCTAATCCTAATTACCATCCTTCCTAAGTCATGCTATGCTGTATATATAT
IRR : CCTAATTACCACTCAACCTAAGCCGATCTTCAGAAGCTTTTCTGGCATTG

Insertion site


Left flankDirect repeatRight flankDR Length
CCTATCAGTGTATGGGGAAATGCATAAGTATCTAAAT8

DNA sequence

CCTAATCCTAATTACCATCCTTCCTAAGTCATGCTATGCTGTATATATATACAGTTAAATGCTTGATTTCACAGGAGGCCTCCATGGCACGAAACAAAGT
GCAGTTTCAAAAAGGCTACAGTCTGGGCGAATTCTTTCAAGCCTATGGTACTGAAGGGCAGTGTTTCGATGCGTTATTCCAGTGGCGATGGCCCAACGGC
TTTCAATGCCCGTTTTGTGCCCATGATCAGTATTGCAAGTTGACTCAGCGCCAACTGCTGCAATGCAATCGGTGTCGTCGGCAAACCTCCATTACTGCCG
GAACTATTTTACAGTCCACTAAGCTGCCTCTGACGCTCTGGTTTCAAGCTATGTACCTGATCACTCAGGACAAAAAAGGGCTTTCCGCAATGAGGCTTCA
TCGGCAGTTGGGCATATCCTACAACGCCGCCTGGCGCCTGAAGCATAAGCTCATGCAAGTCATGATGGAACGCGATGATGATCGGAAGCTGGCGGGCTTT
ATCGAAGTGGATGATGCCTATCTGGGCGGTGAACGAGCCGGCGGCAAGCGAGGGCGTGGCGCCGATGCAAAGACGCCTTTCGTCGCAGCCGTGGAGACCA
CGAGTGAAGGCCATCCGACACGCATTCGGTTATCGGTCGTCAAGGGCTTTAAAACCCAGGAGATCTTGAATTGGAGCCAAAAATATCTGGAGGTTGGCAG
TACCGTGATCTCGGATGGCTTGGCCTGTTTCAATGCCGTGTCGGAAATCGGCTGTGCGCATGACCGGATTGTCTGTGGCGGCGGACGAGCCTCCGTGGAA
GAGCCGGAGTTTTACTGGGTAAATACGGTATTAGGTAACTTGAAGACTTCGTTGCGCAGCACCTACCACGCGGTGCGATCCAAATACGCGCAACGCTATT
TATCGGAATTCCAGTATCGATTTAATCGCCGATTTGATCTACGCATCCTAATACCCCGCTTGGCTTATGCGGCTGTCAGGACGCCGCCAATGCCAGAAAA
GCTTCTGAAGATCGGCTTAGGTTGAGTGGTAATTAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
942 bp313 aa841025+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MARNKVQFQKGYSLGEFFQAYGTEGQCFDALFQWRWPNGFQCPFCAHDQYCKLTQRQLLQCNRCRRQTSITAGTILQSTKLPLTLWFQAMYLITQDKKGL
SAMRLHRQLGISYNAAWRLKHKLMQVMMERDDDRKLAGFIEVDDAYLGGERAGGKRGRGADAKTPFVAAVETTSEGHPTRIRLSVVKGFKTQEILNWSQK
YLEVGSTVISDGLACFNAVSEIGCAHDRIVCGGGRASVEEPEFYWVNTVLGNLKTSLRSTYHAVRSKYAQRYLSEFQYRFNRRFDLRILIPRLAYAAVRT
PPMPEKLLKIGLG

 

Blast result :
Comments
ISHch1 is 73% aa similar to ISKpn3.
References
1] Jeong,H., Yim,J.H., Lee,C., Choi,S.H., Park,Y.K., Yoon,S.H., Hur,C.G., Kang,H.Y., Kim,D., Lee,H.H., Park,K.H., Park,S.H., Park,H.S., Lee,H.K., Oh,T.K. and Kim,J.F. (2005) Nucleic Acids Res. 33 (22), 7066-7073