ISC1290

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_002754 ND Sulfolobus solfataricus
Sulfolobus solfataricus P2
DNA section
IS Length : 1286 bp

Ends


IR Length : 34/36

IRL : GAGAGTGTCCCAAGTGCAAATAATTGAATAAATCTATGTAAAGGTTTATA
IRR : GAGAGTGTCCCAAGCGCAAATAATTGAATAAATATAGTATGATAGAAAAA

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GAGAGTGTCCCAAGTGCAAATAATTGAATAAATCTATGTAAAGGTTTATAGATAATAATTCAAAAGATATCGTGAATTACTGAGAAATTTTGAATTTTCG
CTTGAAGCAAAAAGTCGCGTAATACTTAAAGGGAACCGGGACGATGTAGTACCGATTCACATGAAGCATTGGATAGAATACTACAACGGCCCGGTTCCCT
ATGAACATTTATCAGCAAGGCATAAAACACTTGTGAAAATGAACTACATGCTGATCACGTCTGAAGTGCTGTCGCGTCTCTCTGACCTCTTCATATTGAG
AGCGTTAATAGTAATGATTGTGTGGACGTGCTCCTACAGGGACGTGCGGAGCTACTACGAGTCAGACGTGGTGGTAAGGTGGTTCCTAGGCGAGTACAAG
TCTAAGTCGGAGATCCATAGGAGGGCAAAGAAATTTAGGGGAGAGGTAAAGACTCTGTTCAAGGAGTACGCCAAGGAGTTGGAGGGGAAGATGAGTAGAC
TTGCCGACTACTTACCTAGCAGTGCGTTATACGGAAAGGTTGGAAAGCTGTGGATCGTGGATTCCTTCCTAATCGAGGTACCCTTCGGGAAGAGGAACAA
GGAAACATTGAAGAAGAAGTTTGAGCTAGACCTAAGGCAGAGGAAGTACAGGGAGGCGGCTAACACGCTCTTCTTTTACATTAAGTGCAAAGCGAGGAGG
AGGTTCAAGGGAGAGTTTACAAAGAAGAGGAACAGGAGTTACTTCGGCTTCAAGGTCTTCAACCTCATGTCGCCAACAATGATAGTTCACGAGATTCAAG
TGGAACTGGCCAATTTTCCGGACAATAAGGTTGGCTTCTCTCGCAGCGGTTATAAGGTAGTGGATAGGGGCTTCGTGGGGAAGTCCTCGACCTGGTTGAT
AGGTTTCTCTAGTTTCAGGAGGTATGTGGAGTTCTTTGGGATCTTCTTGAGGAGGTATTGGAGGCCTTACGCTACTGAAAAGGGTATGGTCGAGTTCTTT
GTCTACGTTATCGCGTTGATTTACAACTCCTACATCTACACTTCTGTGTTATCGCGTGTTCCGGAGAGTCAACTCGCCCACTAACTTGTACCGCGAGAGT
TGATCAAGGTAGTGTGGACTATGTTGGAAATTCTGTTTTTCTCTATACTTGATTATTTTCCATTACAATATAAGCTTAATCTCTCGTTATACTGAAAGAT
ATAATTATATTTTATTCTTAATTAATTATAAAATTATTTTTCTATCATACTATATTTATTCAATTATTTGCGCTTGGGACACTCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
924 bp307 aa1611084+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKHWIEYYNGPVPYEHLSARHKTLVKMNYMLITSEVLSRLSDLFILRALIVMIVWTCSYRDVRSYYESDVVVRWFLGEYKSKSEIHRRAKKFRGEVKTLF
KEYAKELEGKMSRLADYLPSSALYGKVGKLWIVDSFLIEVPFGKRNKETLKKKFELDLRQRKYREAANTLFFYIKCKARRRFKGEFTKKRNRSYFGFKVF
NLMSPTMIVHEIQVELANFPDNKVGFSRSGYKVVDRGFVGKSSTWLIGFSSFRRYVEFFGIFLRRYWRPYATEKGMVEFFVYVIALIYNSYIYTSVLSRV
PESQLAH

 

Blast result :
Comments
ISC1294 is 49% aa similar to ISSto3.
References
1] She,Q., Singh,R.K., Confalonieri,F., Zivanovic,Y., Allard,G., Awayez,M.J., Chan-Weiher,C.C., Clausen,I.G., Curtis,B.A., De Moors,A., Erauso,G., Fletcher,C., Gordon,P.M., Heikamp-de Jong,I., Jeffries,A.C., Kozera,C.J., Medina,N., Peng,X., Thi-Ngoc,H.P., Redder,P., Schenk,M.E., Theriault,C., Tolstrup,N., Charlebois,R.L., Doolittle,W.F., Duguet,M., Gaasterland,T., Garrett,R.A., Ragan,M.A., Sensen,C.W. and Van der Oost,J. (2001) Proc. Natl. Acad. Sci. U.S.A. 98 (14), 7835-7840