ISSto14

  • Family ISH3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003106 ND Sulfolobus tokodaii
Sulfolobus tokodaii
DNA section
IS Length : 1227 bp

Ends


IR Length : 16

IRL : CGGTAGACCCAAAATCTAATTAGTAAAAATAATTACCATAGGATAATATT
IRR : CGGTAGACCCAAAATCACCTCCTTAAAAATAAATCTATAGTATTAATAAG

Insertion site


Left flankDirect repeatRight flankDR Length
TTTGAAAGTCTCATCCTTCAGGGCGGGGATATA4

DNA sequence

CGGTAGACCCAAAATCTAATTAGTAAAAATAATTACCATAGGATAATATTAAACTCACATAAGATAACTGAATTTATAACGATATGAAGAATTCAATAAA
TTGGAGAAAGGTTTATGGTGAGGGAGGAGGAGTATTACCACGTGATAGGACAAGATGGTAATACCAAACCTCCCTCACCAAAATAACGTCCAACGGATAG
GATATAAATTACTTTCCATGTTAGACTTCAAAGGGAAAAAAGCAGAGGACGTAGGGAAGACACTAATCTCCGCGTGCTTATGGAACAGTTCCATAGAAAA
CAAGTCAAGTGCATACAACGTGTCGCCACAGACCGTGAGGAACTACGTAGAAGAGCAAGGAATAGAAGTAGTCGAGAAACTCTTGGAACAAATGAGGAAA
ATATCCTTGGAAACACTAAAGGGAGTAAAGGAAATAGACATATCAATAGACTGGACCACCAAAACTTGGTACGGGAAACAAGTTAAAGGACTGGGGACTT
CGGAAAAGGGAAACTCGTGGAACCACGCGACAGCGACGACCAAATATGGAGGGAAAATACTCCTACTGGCTTTCATCACACAAGTGAACGGCATGACAAA
GGAAGATATCGTGAAGGCCCTCGTGGAACAAGTCGTCGCAATGGGGTTAAAGATAAGGTTGATAACTCTTGATGCGGGTTTCTATACAGTTGGTGTGCTT
AACTTCATTTCGCAGTTTAAGTACATAATCGGTGTCCCCGTTGGGGACGTGAAGGTTTATGAGGAGTTTGACGGGGAGTACACGACTAACAGTAAGAGGA
AGAGGAGGGAGGAGCAAGTTAAGTTTAGGCTCCTCGTGTATAGCAAGGAGAAGGTTAGGAGGAAGAGGAGGGAGGTCGTTTATTTCGCTAGGGCTACTAA
CCTTGACCTAAAAAAGGGGGACGTGTTGAAGTTGTATAATAAGGTAAGGGGCCCCATAGAGACTTCTTATCGTGACATTAAGGCGTTCCTTCCCTTCACT
AGTTCCACTAAGTTCGTCTTTCGCACGCTGATCTTCGTGCTGGCCATGGCCTTTTACTCCTTCTACACTATATTTAAGAGTGTGATGGGTAGGGAAGAGT
TCAGACGACTACTGATCCTCTTGTTCCCTGAAGATTTACTAAATTTGGAAAATTCCCTATTTAATCTGGTGGAAACACTTATTAATACTATAGATTTATT
TTTAAGGAGGTGATTTTGGGTCTACCG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1059 bp352 aa1551213+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MVIPNLPHQNNVQRIGYKLLSMLDFKGKKAEDVGKTLISACLWNSSIENKSSAYNVSPQTVRNYVEEQGIEVVEKLLEQMRKISLETLKGVKEIDISIDW
TTKTWYGKQVKGLGTSEKGNSWNHATATTKYGGKILLLAFITQVNGMTKEDIVKALVEQVVAMGLKIRLITLDAGFYTVGVLNFISQFKYIIGVPVGDVK
VYEEFDGEYTTNSKRKRREEQVKFRLLVYSKEKVRRKRREVVYFARATNLDLKKGDVLKLYNKVRGPIETSYRDIKAFLPFTSSTKFVFRTLIFVLAMAF
YSFYTIFKSVMGREEFRRLLILLFPEDLLNLENSLFNLVETLINTIDLFLRR

 

Blast result :
Comments
ISSto14 is 88% aa similar to ISC1225
References
1] Kawarabayasi,Y., Hino,Y., Horikawa,H., Jin-no,K., Takahashi,M., Sekine,M., Baba,S., Ankai,A., Kosugi,H., Hosoyama,A., Fukui,S., Nagai,Y., Nishijima,K., Otsuka,R., Nakazawa,H., Takamiya,M., Kato,Y., Yoshizawa,T., Tanaka,T., Kudoh,Y., Yamazaki,J., Kushida,N., Oguchi,A., Aoki,K., Masuda,S., Yanagii,M., Nishimura,M., Yamagishi,A., Oshima,T. and Kikuchi,H. (2001) DNA Res. 8 (4), 123-140