ISSto14
- Family ISH3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003106 | ND | Sulfolobus tokodaii | Sulfolobus tokodaii |
DNA section
IS Length : 1227 bp
Ends
IR Length : 16
IRL : CGGTAGACCCAAAATCTAATTAGTAAAAATAATTACCATAGGATAATATT
IRR : CGGTAGACCCAAAATCACCTCCTTAAAAATAAATCTATAGTATTAATAAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTGAAAGTCTCATCC | TTCA | GGGCGGGGATATA | 4 |
DNA sequence
CGGTAGACCCAAAATCTAATTAGTAAAAATAATTACCATAGGATAATATTAAACTCACATAAGATAACTGAATTTATAACGATATGAAGAATTCAATAAA
TTGGAGAAAGGTTTATGGTGAGGGAGGAGGAGTATTACCACGTGATAGGACAAGATGGTAATACCAAACCTCCCTCACCAAAATAACGTCCAACGGATAG
GATATAAATTACTTTCCATGTTAGACTTCAAAGGGAAAAAAGCAGAGGACGTAGGGAAGACACTAATCTCCGCGTGCTTATGGAACAGTTCCATAGAAAA
CAAGTCAAGTGCATACAACGTGTCGCCACAGACCGTGAGGAACTACGTAGAAGAGCAAGGAATAGAAGTAGTCGAGAAACTCTTGGAACAAATGAGGAAA
ATATCCTTGGAAACACTAAAGGGAGTAAAGGAAATAGACATATCAATAGACTGGACCACCAAAACTTGGTACGGGAAACAAGTTAAAGGACTGGGGACTT
CGGAAAAGGGAAACTCGTGGAACCACGCGACAGCGACGACCAAATATGGAGGGAAAATACTCCTACTGGCTTTCATCACACAAGTGAACGGCATGACAAA
GGAAGATATCGTGAAGGCCCTCGTGGAACAAGTCGTCGCAATGGGGTTAAAGATAAGGTTGATAACTCTTGATGCGGGTTTCTATACAGTTGGTGTGCTT
AACTTCATTTCGCAGTTTAAGTACATAATCGGTGTCCCCGTTGGGGACGTGAAGGTTTATGAGGAGTTTGACGGGGAGTACACGACTAACAGTAAGAGGA
AGAGGAGGGAGGAGCAAGTTAAGTTTAGGCTCCTCGTGTATAGCAAGGAGAAGGTTAGGAGGAAGAGGAGGGAGGTCGTTTATTTCGCTAGGGCTACTAA
CCTTGACCTAAAAAAGGGGGACGTGTTGAAGTTGTATAATAAGGTAAGGGGCCCCATAGAGACTTCTTATCGTGACATTAAGGCGTTCCTTCCCTTCACT
AGTTCCACTAAGTTCGTCTTTCGCACGCTGATCTTCGTGCTGGCCATGGCCTTTTACTCCTTCTACACTATATTTAAGAGTGTGATGGGTAGGGAAGAGT
TCAGACGACTACTGATCCTCTTGTTCCCTGAAGATTTACTAAATTTGGAAAATTCCCTATTTAATCTGGTGGAAACACTTATTAATACTATAGATTTATT
TTTAAGGAGGTGATTTTGGGTCTACCG
TTGGAGAAAGGTTTATGGTGAGGGAGGAGGAGTATTACCACGTGATAGGACAAGATGGTAATACCAAACCTCCCTCACCAAAATAACGTCCAACGGATAG
GATATAAATTACTTTCCATGTTAGACTTCAAAGGGAAAAAAGCAGAGGACGTAGGGAAGACACTAATCTCCGCGTGCTTATGGAACAGTTCCATAGAAAA
CAAGTCAAGTGCATACAACGTGTCGCCACAGACCGTGAGGAACTACGTAGAAGAGCAAGGAATAGAAGTAGTCGAGAAACTCTTGGAACAAATGAGGAAA
ATATCCTTGGAAACACTAAAGGGAGTAAAGGAAATAGACATATCAATAGACTGGACCACCAAAACTTGGTACGGGAAACAAGTTAAAGGACTGGGGACTT
CGGAAAAGGGAAACTCGTGGAACCACGCGACAGCGACGACCAAATATGGAGGGAAAATACTCCTACTGGCTTTCATCACACAAGTGAACGGCATGACAAA
GGAAGATATCGTGAAGGCCCTCGTGGAACAAGTCGTCGCAATGGGGTTAAAGATAAGGTTGATAACTCTTGATGCGGGTTTCTATACAGTTGGTGTGCTT
AACTTCATTTCGCAGTTTAAGTACATAATCGGTGTCCCCGTTGGGGACGTGAAGGTTTATGAGGAGTTTGACGGGGAGTACACGACTAACAGTAAGAGGA
AGAGGAGGGAGGAGCAAGTTAAGTTTAGGCTCCTCGTGTATAGCAAGGAGAAGGTTAGGAGGAAGAGGAGGGAGGTCGTTTATTTCGCTAGGGCTACTAA
CCTTGACCTAAAAAAGGGGGACGTGTTGAAGTTGTATAATAAGGTAAGGGGCCCCATAGAGACTTCTTATCGTGACATTAAGGCGTTCCTTCCCTTCACT
AGTTCCACTAAGTTCGTCTTTCGCACGCTGATCTTCGTGCTGGCCATGGCCTTTTACTCCTTCTACACTATATTTAAGAGTGTGATGGGTAGGGAAGAGT
TCAGACGACTACTGATCCTCTTGTTCCCTGAAGATTTACTAAATTTGGAAAATTCCCTATTTAATCTGGTGGAAACACTTATTAATACTATAGATTTATT
TTTAAGGAGGTGATTTTGGGTCTACCG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1059 bp | 352 aa | 155 | 1213 | + | No |
Chemistry : DDE
ORF sequence :
MVIPNLPHQNNVQRIGYKLLSMLDFKGKKAEDVGKTLISACLWNSSIENKSSAYNVSPQTVRNYVEEQGIEVVEKLLEQMRKISLETLKGVKEIDISIDW
TTKTWYGKQVKGLGTSEKGNSWNHATATTKYGGKILLLAFITQVNGMTKEDIVKALVEQVVAMGLKIRLITLDAGFYTVGVLNFISQFKYIIGVPVGDVK
VYEEFDGEYTTNSKRKRREEQVKFRLLVYSKEKVRRKRREVVYFARATNLDLKKGDVLKLYNKVRGPIETSYRDIKAFLPFTSSTKFVFRTLIFVLAMAF
YSFYTIFKSVMGREEFRRLLILLFPEDLLNLENSLFNLVETLINTIDLFLRR
TTKTWYGKQVKGLGTSEKGNSWNHATATTKYGGKILLLAFITQVNGMTKEDIVKALVEQVVAMGLKIRLITLDAGFYTVGVLNFISQFKYIIGVPVGDVK
VYEEFDGEYTTNSKRKRREEQVKFRLLVYSKEKVRRKRREVVYFARATNLDLKKGDVLKLYNKVRGPIETSYRDIKAFLPFTSSTKFVFRTLIFVLAMAF
YSFYTIFKSVMGREEFRRLLILLFPEDLLNLENSLFNLVETLINTIDLFLRR
Blast result :
Comments
ISSto14 is 88% aa similar to ISC1225
References
1] Kawarabayasi,Y., Hino,Y., Horikawa,H., Jin-no,K., Takahashi,M., Sekine,M., Baba,S., Ankai,A., Kosugi,H., Hosoyama,A., Fukui,S., Nagai,Y., Nishijima,K., Otsuka,R., Nakazawa,H., Takamiya,M., Kato,Y., Yoshizawa,T., Tanaka,T., Kudoh,Y., Yamazaki,J., Kushida,N., Oguchi,A., Aoki,K., Masuda,S., Yanagii,M., Nishimura,M., Yamagishi,A., Oshima,T. and Kikuchi,H. (2001) DNA Res. 8 (4), 123-140