ISC1439B
- Family ISH3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_002754 | ND | Sulfolobus solfataricus | Sulfolobus solfataricus P2 |
DNA section
IS Length : 1439 bp
Ends
IR Length : 21/24
IRL : CAGTTGTGTTTCACCAATTTTACTAGAAATGATGTAATTTCTATGGTAGG
IRR : CAGTTGTGTTTCACCAAATTATCTCACTTGAAAGATATTGTGTTAATTCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GATAAAACAAA | GTAAACTGC | TGAGCGTGGATC | 9 |
DNA sequence
CAGTTGTGTTTCACCAATTTTACTAGAAATGATGTAATTTCTATGGTAGGGGAAAATATCGAGTTATGGTTGTGAAAATCGGCTTATTTCAACATGATTA
TCAAAAAATTTTTAGATTAAACGAGAAGCATGGTTAAAAAGGAGTTTGTATATAGAGGGTAATATCATCTGTTTAGTATTATCAAGCGGGGAGGGGAGGT
CTAGGGAGGAGGTGAACAGGAAAGGGTTAAAGCGAGGGACTCCATGACTCCGTTATGCAAGTTTATGAAACGGGATTCAAAACGGAGTTGAAGTCCCTCG
CTAGTTATTTCATCGTCAATAATCTTAACGTTATCTCCCAAGAGTTGGACACGAGGATCGCGGACGCAGCTCCGTTCCTGTTGACAGGGAACAGGGGAAA
GGAGTACTTGAAGGTCGTTAGGGAAGGAGAGAAGGTGATGAGTCAAGGGGAGAGGAGCTTCAAGTTCTACCCTCACGTGAAAGTTGAGGGAGAGACTACA
ATCGTTGCAGTGGACGAGACCGCGATAACCGTGGGGGAGAAGGAGTCGAGGAAGGTGGAAGGATTTCAACTCTATAACGGGAAGAGGAAGGGAGTTAAGT
TGAGGTCCGTGGACTTGGTGTTCCCCTTGAGGTTGTCCCTCCTCGAGGAGATAGCTGACTTGAGAAGCGATACTCCCTCCCAGTTCCTGATGAGGGCCGT
GAGCGAAGTTGCTCAGCACCTCAAGATAGACTACGTTGTTGCTGACGCGGGTTTCCTGAACTTGAAGGTAATCAAGGAGATGCCCGTGAAGACCGTGGTA
GGAGGTAAGACCAACCTGAAGGGCTTCAAGGAACTCTCCAACGTCCCTCTAACCGAGAAGAAATGCGAGGTAAATGACAGGGTTTACGTTGCGTATAGGG
TCCTGAAGTACAATGACCTTTACTACTATGAAGTGATATACGTCAAGGAGAAACCCAGGCACTTCATCTTCGTTACCAACTTCAATGGAGATCCCTACAA
GCTAGCTGAGCTCTACAGGTTGAGATGGCAGAGCGAAGAGGGCTTCAAGGTCAGGAAGGCCAGGATAAGGTACGTGAGGAAGTTAACCAACAAGATCTTC
CTCTACCTCTATTACACTGTCCTAGATTCAGTGTGGAACCTCGTGAATTACCTCCTCTTCAACTTCAAGTCCACGAAAAGGAAGCCTCTCTCCTTCAACT
CCTTCGTCAGGCTTCTCTAACTTCCTCGGCGTGCAGAGGACACTCTGCACGCCGTTCTAACCACGTGATAAAAATTCAGATTATCTCCCTTTAATCTGAA
TCTACACGTTATGTTTATTGCAAATAATGTTAATATGCTATATTTCACTATAATATCACTATCTTTCTCTATATCAATTCCCTTTTGAAAGAATTAACAC
AATATCTTTCAAGTGAGATAATTTGGTGAAACACAACTG
TCAAAAAATTTTTAGATTAAACGAGAAGCATGGTTAAAAAGGAGTTTGTATATAGAGGGTAATATCATCTGTTTAGTATTATCAAGCGGGGAGGGGAGGT
CTAGGGAGGAGGTGAACAGGAAAGGGTTAAAGCGAGGGACTCCATGACTCCGTTATGCAAGTTTATGAAACGGGATTCAAAACGGAGTTGAAGTCCCTCG
CTAGTTATTTCATCGTCAATAATCTTAACGTTATCTCCCAAGAGTTGGACACGAGGATCGCGGACGCAGCTCCGTTCCTGTTGACAGGGAACAGGGGAAA
GGAGTACTTGAAGGTCGTTAGGGAAGGAGAGAAGGTGATGAGTCAAGGGGAGAGGAGCTTCAAGTTCTACCCTCACGTGAAAGTTGAGGGAGAGACTACA
ATCGTTGCAGTGGACGAGACCGCGATAACCGTGGGGGAGAAGGAGTCGAGGAAGGTGGAAGGATTTCAACTCTATAACGGGAAGAGGAAGGGAGTTAAGT
TGAGGTCCGTGGACTTGGTGTTCCCCTTGAGGTTGTCCCTCCTCGAGGAGATAGCTGACTTGAGAAGCGATACTCCCTCCCAGTTCCTGATGAGGGCCGT
GAGCGAAGTTGCTCAGCACCTCAAGATAGACTACGTTGTTGCTGACGCGGGTTTCCTGAACTTGAAGGTAATCAAGGAGATGCCCGTGAAGACCGTGGTA
GGAGGTAAGACCAACCTGAAGGGCTTCAAGGAACTCTCCAACGTCCCTCTAACCGAGAAGAAATGCGAGGTAAATGACAGGGTTTACGTTGCGTATAGGG
TCCTGAAGTACAATGACCTTTACTACTATGAAGTGATATACGTCAAGGAGAAACCCAGGCACTTCATCTTCGTTACCAACTTCAATGGAGATCCCTACAA
GCTAGCTGAGCTCTACAGGTTGAGATGGCAGAGCGAAGAGGGCTTCAAGGTCAGGAAGGCCAGGATAAGGTACGTGAGGAAGTTAACCAACAAGATCTTC
CTCTACCTCTATTACACTGTCCTAGATTCAGTGTGGAACCTCGTGAATTACCTCCTCTTCAACTTCAAGTCCACGAAAAGGAAGCCTCTCTCCTTCAACT
CCTTCGTCAGGCTTCTCTAACTTCCTCGGCGTGCAGAGGACACTCTGCACGCCGTTCTAACCACGTGATAAAAATTCAGATTATCTCCCTTTAATCTGAA
TCTACACGTTATGTTTATTGCAAATAATGTTAATATGCTATATTTCACTATAATATCACTATCTTTCTCTATATCAATTCCCTTTTGAAAGAATTAACAC
AATATCTTTCAAGTGAGATAATTTGGTGAAACACAACTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
966 bp | 321 aa | 255 | 1220 | + | No |
Chemistry : DDE
ORF sequence :
MQVYETGFKTELKSLASYFIVNNLNVISQELDTRIADAAPFLLTGNRGKEYLKVVREGEKVMSQGERSFKFYPHVKVEGETTIVAVDETAITVGEKESRK
VEGFQLYNGKRKGVKLRSVDLVFPLRLSLLEEIADLRSDTPSQFLMRAVSEVAQHLKIDYVVADAGFLNLKVIKEMPVKTVVGGKTNLKGFKELSNVPLT
EKKCEVNDRVYVAYRVLKYNDLYYYEVIYVKEKPRHFIFVTNFNGDPYKLAELYRLRWQSEEGFKVRKARIRYVRKLTNKIFLYLYYTVLDSVWNLVNYL
LFNFKSTKRKPLSFNSFVRLL
VEGFQLYNGKRKGVKLRSVDLVFPLRLSLLEEIADLRSDTPSQFLMRAVSEVAQHLKIDYVVADAGFLNLKVIKEMPVKTVVGGKTNLKGFKELSNVPLT
EKKCEVNDRVYVAYRVLKYNDLYYYEVIYVKEKPRHFIFVTNFNGDPYKLAELYRLRWQSEEGFKVRKARIRYVRKLTNKIFLYLYYTVLDSVWNLVNYL
LFNFKSTKRKPLSFNSFVRLL
Blast result :
Comments
ISC1439B is 87% aa similar to ISC1439A.
References
1] She,Q., Singh,R.K., Confalonieri,F., Zivanovic,Y., Allard,G., Awayez,M.J., Chan-Weiher,C.C., Clausen,I.G., Curtis,B.A., De Moors,A., Erauso,G., Fletcher,C., Gordon,P.M., Heikamp-de Jong,I., Jeffries,A.C., Kozera,C.J., Medina,N., Peng,X., Thi-Ngoc,H.P., Redder,P., Schenk,M.E., Theriault,C., Tolstrup,N., Charlebois,R.L., Doolittle,W.F., Duguet,M., Gaasterland,T., Garrett,R.A., Ragan,M.A., Sensen,C.W. and Van der Oost,J. (2001) Proc. Natl. Acad. Sci. U.S.A. 98 (14), 7835-7840