ISC1228
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_002754 | ND | Sulfolobus solfataricus | Sulfolobus solfataricus P2 |
DNA section
IS Length : 1228 bp
Ends
Left end : CCTATATATAGGTTAATTAGCTGGGGAGAGTAATACTCCTCAGCTGGGGAAATATGGTCGAGATGGGAATTGAAGCAAAGTCTTCGGGCGAGGGCGTGAC
Right end : CCTCCCCTATCACTAGCTAACGTGGATTGAAAGAGTCCGCGTGGCAATAGTAGCTGATACTATGCTCAAAATTTGACCGAAAGATTTATTACTGAACGCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
CCTATATATAGGTTAATTAGCTGGGGAGAGTAATACTCCTCAGCTGGGGAAATATGGTCGAGATGGGAATTGAAGCAAAGTCTTCGGGCGAGGGCGTGAC
GAGCCCCTACAGTCGGACTGAACATTGTGAAAATATTCACGAATATAGGTGTGACACAAGGGTAGGGGTAATTGGAATAGACGTATCAAAAGAACACTTG
GTAACAAGTAAGGGGAGGGTGAGGAAATTCACAAACAACGAGAAGGGCTACGAAGAAATACTAACCATGAAGCCAAACATCATCGTAATAGAACCCACAG
GAGTATACTCAACAAGACCTTGCCAATACTTCAAAGAAAGAGGAGTGAAAGTCCTACTAGTCAGTCCTACCTTGCTATGGAAAGAAAAGGACGTAAGGGG
AAAGAAAACAGATTTTTACGACGCAGAAAAACTTGAAAACATGGTAAATAAGGCTAGAGAATACGTTAACAACCCCTTAAAAGAGTTAGTATCACTCTAC
CTCTTCATGAAGGATGTGCAAACGAAACAAGAGAACAGGTTAAGGAGAGCTCTCTTCCTCGTGAGCGACGAGGAGAAGTTGAGCGAGGAGAGATTGGAGA
AGTTCTCTAAGGGAGACTTCTCTGACGTAAAACTGTATCAACTGGAATACACTGGTACAGTACTACGTGAGATTCAAGTCCTAGCGAGAACACTACTTCA
AACGCGAGAAGAGTTGAAGGAGGTGAGGAAAATGATAGAGGGTAATGTGCCTCAAGACCACGTGTTACTCACGATTCCCGGAATAGGGAAACTGGCAGCT
GGGATTATAATTGGGATTGTGGGTGATATTAAGCGCTTCCCAAGACCTGAATCCTTCGTTGCTTATTGCGGTTTAGACCCGGTGGTTGAGAGGAGTGGTA
GGATTGAGGTTAGAAAGGGTATCTCCAAGAGGGGTAACAAGTATTTGCGTAGCTTGTTTTATTTCCTTGCCGAGACTCAATATTCGCGTAACCCAACTCT
CCTTAAGTTCTACGAAACCCACAAGGATAAACTGAAGGGTAGGAAACTGTACACTGCCTTAGCTGGGAAGTTGGCTAGGATAGTGTGGAGTGTTTGGTAT
AATAATAAACCTTATGAGGTGAAGTGACCCTCCCCTATCACTAGCTAACGTGGATTGAAAGAGTCCGCGTGGCAATAGTAGCTGATACTATGCTCAAAAT
TTGACCGAAAGATTTATTACTGAACGCC
GAGCCCCTACAGTCGGACTGAACATTGTGAAAATATTCACGAATATAGGTGTGACACAAGGGTAGGGGTAATTGGAATAGACGTATCAAAAGAACACTTG
GTAACAAGTAAGGGGAGGGTGAGGAAATTCACAAACAACGAGAAGGGCTACGAAGAAATACTAACCATGAAGCCAAACATCATCGTAATAGAACCCACAG
GAGTATACTCAACAAGACCTTGCCAATACTTCAAAGAAAGAGGAGTGAAAGTCCTACTAGTCAGTCCTACCTTGCTATGGAAAGAAAAGGACGTAAGGGG
AAAGAAAACAGATTTTTACGACGCAGAAAAACTTGAAAACATGGTAAATAAGGCTAGAGAATACGTTAACAACCCCTTAAAAGAGTTAGTATCACTCTAC
CTCTTCATGAAGGATGTGCAAACGAAACAAGAGAACAGGTTAAGGAGAGCTCTCTTCCTCGTGAGCGACGAGGAGAAGTTGAGCGAGGAGAGATTGGAGA
AGTTCTCTAAGGGAGACTTCTCTGACGTAAAACTGTATCAACTGGAATACACTGGTACAGTACTACGTGAGATTCAAGTCCTAGCGAGAACACTACTTCA
AACGCGAGAAGAGTTGAAGGAGGTGAGGAAAATGATAGAGGGTAATGTGCCTCAAGACCACGTGTTACTCACGATTCCCGGAATAGGGAAACTGGCAGCT
GGGATTATAATTGGGATTGTGGGTGATATTAAGCGCTTCCCAAGACCTGAATCCTTCGTTGCTTATTGCGGTTTAGACCCGGTGGTTGAGAGGAGTGGTA
GGATTGAGGTTAGAAAGGGTATCTCCAAGAGGGGTAACAAGTATTTGCGTAGCTTGTTTTATTTCCTTGCCGAGACTCAATATTCGCGTAACCCAACTCT
CCTTAAGTTCTACGAAACCCACAAGGATAAACTGAAGGGTAGGAAACTGTACACTGCCTTAGCTGGGAAGTTGGCTAGGATAGTGTGGAGTGTTTGGTAT
AATAATAAACCTTATGAGGTGAAGTGACCCTCCCCTATCACTAGCTAACGTGGATTGAAAGAGTCCGCGTGGCAATAGTAGCTGATACTATGCTCAAAAT
TTGACCGAAAGATTTATTACTGAACGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1074 bp | 357 aa | 54 | 1127 | + | No |
Chemistry : DEDD
ORF sequence :
MVEMGIEAKSSGEGVTSPYSRTEHCENIHEYRCDTRVGVIGIDVSKEHLVTSKGRVRKFTNNEKGYEEILTMKPNIIVIEPTGVYSTRPCQYFKERGVKV
LLVSPTLLWKEKDVRGKKTDFYDAEKLENMVNKAREYVNNPLKELVSLYLFMKDVQTKQENRLRRALFLVSDEEKLSEERLEKFSKGDFSDVKLYQLEYT
GTVLREIQVLARTLLQTREELKEVRKMIEGNVPQDHVLLTIPGIGKLAAGIIIGIVGDIKRFPRPESFVAYCGLDPVVERSGRIEVRKGISKRGNKYLRS
LFYFLAETQYSRNPTLLKFYETHKDKLKGRKLYTALAGKLARIVWSVWYNNKPYEVK
LLVSPTLLWKEKDVRGKKTDFYDAEKLENMVNKAREYVNNPLKELVSLYLFMKDVQTKQENRLRRALFLVSDEEKLSEERLEKFSKGDFSDVKLYQLEYT
GTVLREIQVLARTLLQTREELKEVRKMIEGNVPQDHVLLTIPGIGKLAAGIIIGIVGDIKRFPRPESFVAYCGLDPVVERSGRIEVRKGISKRGNKYLRS
LFYFLAETQYSRNPTLLKFYETHKDKLKGRKLYTALAGKLARIVWSVWYNNKPYEVK
Blast result :
Comments
ISC1228 is 87% aa similar to ISSto6.
References
1] She,Q., Singh,R.K., Confalonieri,F., Zivanovic,Y., Allard,G.,Awayez,M.J., Chan-Weiher,C.C., Clausen,I.G., Curtis,B.A., De Moors,A., Erauso,G., Fletcher,C., Gordon,P.M., Heikamp-de Jong,I., Jeffries,A.C., Kozera,C.J., Medina,N., Peng,X., Thi-Ngoc,H.P.,Redder,P., Schenk,M.E., Theriault,C., Tolstrup,N., Charlebois,R.L.,Doolittle,W.F., Duguet,M., Gaasterland,T., Garrett,R.A., Ragan,M.A., Sensen,C.W. and Van der Oost,J. (2001) Proc. Natl. Acad. Sci. U.S.A. 98 (14), 7835-7840