ISMba20

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007355 ND Methanosarcina barkeri
Methanosarcina barkeri fusaro
DNA section
IS Length : 1519 bp

Ends


Left end : AAAACGCACATGAAATTCTTCGAATAACAGGCACAAATAAATGAAAGTAGTTTACCCCACATTTTTTGACTATTGATCTCCTCATTACCTTGGGCAGTAA
Right end : GATGAACGAATAAAAATAATGAGTGAAATATTTGCAATAACGGAAAAACAGAATGAAGAGAGCACGTGAGGAAGATTTCCTCATGTACTTTCATGCTAAA

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

AAAACGCACATGAAATTCTTCGAATAACAGGCACAAATAAATGAAAGTAGTTTACCCCACATTTTTTGACTATTGATCTCCTCATTACCTTGGGCAGTAA
GGTTGTCTTGTTTTTGGTTTATCAAAACCGTACTAAAACTAATCAGTGAATTGCCATCGAAGGCTCAAATGTGACTTTGATCATGGATGCTAAATTGGCC
TTTTAGGCAATTCCACTGCCCAAACCAAATTGGGTGATCTAATTTGATTGAAGTCATAAACAAAGCTTGTGGTCTAGATATTCACAAACTCTTTTTCATT
GCTACAATTCTCAGTCTATCTGGTGAAAAACAACAGCAACGTTTTAACAGAGATGATGAGGGAATTTTAGCCCTTAAAAAATGGGTAATCTCAGAAAAAT
GTAATGTTGTTGCATGTGAATCAACAAGTGATTTCTGGGTTCCGATTCATGATTCATTGATAAATTATCTACCTGTAATAGTTGGAAATGCACGAGATAT
GAAGGTATTTACTCATAAAAAAACAGATAAGATCGACTCAGAAGTCATTGCGCAACTTGCACTTAATAATATGATTCAGCCATCAAGAGTTTTCCCAAAG
GATCAGAGAGATTTTAGGTCATATGTTCGACTTCGGTTAACACTTGTACAAAAAAGAACAGATATAAAAAATAAAGCTCACTCAATTCTTGCATCTGAAA
TGTTAAACCTGAAGAATGCACTGACAGACATTTTTGGCAAGAATGGCAGAATGATCTTATCAGGAATCTCTTCAGGTAAGAGTGTTGACCAGATTATAGC
AAGCCTCTCTCCAAATGTTCGGAAAAAAGCTGCTCAGATAAGAGAAATTCTTGATCGAGAAATCTCTCAAAGTGCTGCATTCAGACTTCAGATCTGTCTG
AAACTCATAAAGAGTCTTGATGATGAGATCGAAGCTTTAGAAAAAGAAATTTTCAATTATGCTTATCAAAAGCATAAAAGAGAAATGGAGATTTTAATGT
CAGTTCCTGGCATAGGAGAACTTGGTGCTGCAACTCTACTTGCTGAGATAGGCAACTTTAAGGATTTTTCTTCTGGAAATAAGCTTGCTTCCTGGCTTGG
TCTGGTTCCTAATGTGTATCAATCTGCAGATAAATACCACAACGGAAGAATCACAAAGAGAGGATCGAAAACAGCAAGATGGATTCTGACGCAGATTTCT
CAGGCAGCAGCAAGAACGAAAAATAGCAAGTTAAAAGAGTTTTTTAACAGAAAAAAGAAGTCAATTGGACATTCCAAGGCAATAATTGCCTTGGCAAGGA
AAATTGCAACGATAATATGGCATCTTATCGTAAACGATGAGATGTACGAAGATGAAACTGGATATAAAAAGGGAGAAACTCAAAAGAGGAAGATTGTCGA
GACCGAGATATTTTCCGTTGATGAACGAATAAAAATAATGAGTGAAATATTTGCAATAACGGAAAAACAGAATGAAGAGAGCACGTGAGGAAGATTTCCT
CATGTACTTTCATGCTAAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1245 bp414 aa2441488+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MIEVINKACGLDIHKLFFIATILSLSGEKQQQRFNRDDEGILALKKWVISEKCNVVACESTSDFWVPIHDSLINYLPVIVGNARDMKVFTHKKTDKIDSE
VIAQLALNNMIQPSRVFPKDQRDFRSYVRLRLTLVQKRTDIKNKAHSILASEMLNLKNALTDIFGKNGRMILSGISSGKSVDQIIASLSPNVRKKAAQIR
EILDREISQSAAFRLQICLKLIKSLDDEIEALEKEIFNYAYQKHKREMEILMSVPGIGELGAATLLAEIGNFKDFSSGNKLASWLGLVPNVYQSADKYHN
GRITKRGSKTARWILTQISQAAARTKNSKLKEFFNRKKKSIGHSKAIIALARKIATIIWHLIVNDEMYEDETGYKKGETQKRKIVETEIFSVDERIKIMS
EIFAITEKQNEEST

 

Blast result :
Comments
ISMba20 is 93% aa similar to ISMba7.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goodwin,L.A., Saunders,E.H., Schmutz,J., Larimer,F., Land,M., Anderson,I. and Richardson,P. (2005) Direct submission GenBank