ISC1229

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_002754 ND Sulfolobus solfataricus
Sulfolobus solfataricus P2
DNA section
IS Length : 1232 bp

Ends


Left end : CCTATACAGGTTTTATTAGTCGGGTAGAGTAATACTCTCCTCGACTGGGGAAACATGGTCGAGACACTATCTGAAGCAAAGTCTTCGGCTACGGGCGTGA
Right end : ACCCTTCCCCTTAATCGCCACCTGGGTTGAAAGGACCCACGTGGCAATGTTAGCTAATACTATGCTTGAAGTTTGACCGAAAGGTTTATTACTGAACGCC

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

CCTATACAGGTTTTATTAGTCGGGTAGAGTAATACTCTCCTCGACTGGGGAAACATGGTCGAGACACTATCTGAAGCAAAGTCTTCGGCTACGGGCGTGA
CTAACCCCTACCGTCGGACTGAACATTGTGATAAAATTCACGAATATAGGTGTGACAAAGGGGTAGGGGTAATAGGAATAGACGTATCAAAAGATTATTT
AATAACTAGTAGGGGGAGGGTGAGAAAATACGAGAACAACAAAGAGGGATATGAAGAGATACTTGAAATGAAACCTTGTACAATAGTCCTAGAACCTATG
GGAGTTTACGCAATAAGGCCTTCACAATACTTCAAGGAGAAAGGAATAAAAGTACTACAGGTTAGTCCAAACATGTTATCAAGAGAAAAGGAGTTTAGGG
GAAAGAAAACAGATTTTTACGATGCTGAAAAAATAGAAAACATGGTTGATAAGGCAAAGGAGTACGAGTATAACCCCTTAAGAGAACTAGTAACACTTTA
CCTCTTCCTCAAGGACATAGAAGTAAAGTACAAGAACAGGTTAGAGAGAACACTATTCCTAGTAAGCGACAACAACAAGATAAGCAAGGAAAGGTTAGAA
AAACTCGCAAAAGGAGATTTTACACAAGAAGAACTATACCAACTAGAATACACACCAATAGTAGTTGAAGAAATCAAAGTCCTAGCAAAAACACTCCTAG
AAACGCAAGAGAAATTGAAAGAAGTTAGGAGGATGATCGAGGAACAAGTACCGGATAATCACGTTTTATTAACAATCCCGGGAATTGGGAGGCTTGCAGC
TGGTATTATTATTGGTATTGTTGGTGATATTAGGCGTTTTCCTAAACCAGAATCATTTGTTGCCTATTGTGGTCTAGATCCCGTAGTGGAGAGGAGCGGG
AAGGCTGTGGTAAGTAAGGGTATTTCGAAGAGGGGTAATAAGTACTTGCGTAGTTTGCTTTACTTCTTGGCAGGGAGGAATTATTCTAGGAATCCTAATT
TGCTGAAGTTTTATGAGACACACAAGGATAGGCTTCACGGTAGGAAGTTGTATGCTGCTTTGGCTAGGAAGTTGGCAAGGGTTGTATGGAGTGTATGGTA
TAATAATAAGCCTTATGAGCCTAAATAGGTGAACCCTTCCCCTTAATCGCCACCTGGGTTGAAAGGACCCACGTGGCAATGTTAGCTAATACTATGCTTG
AAGTTTGACCGAAAGGTTTATTACTGAACGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1074 bp357 aa551128+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MVETLSEAKSSATGVTNPYRRTEHCDKIHEYRCDKGVGVIGIDVSKDYLITSRGRVRKYENNKEGYEEILEMKPCTIVLEPMGVYAIRPSQYFKEKGIKV
LQVSPNMLSREKEFRGKKTDFYDAEKIENMVDKAKEYEYNPLRELVTLYLFLKDIEVKYKNRLERTLFLVSDNNKISKERLEKLAKGDFTQEELYQLEYT
PIVVEEIKVLAKTLLETQEKLKEVRRMIEEQVPDNHVLLTIPGIGRLAAGIIIGIVGDIRRFPKPESFVAYCGLDPVVERSGKAVVSKGISKRGNKYLRS
LLYFLAGRNYSRNPNLLKFYETHKDRLHGRKLYAALARKLARVVWSVWYNNKPYEPK

 

Blast result :
Comments
ISC1229 is 94% aa similar to ISSto6. There are 2 complete and 7 partial copies in Sulfolobus solfataricus P2 genome.
References
1] She,Q., Singh,R.K., Confalonieri,F., Zivanovic,Y., Allard,G.,Awayez,M.J., Chan-Weiher,C.C., Clausen,I.G., Curtis,B.A., De Moors,A., Erauso,G., Fletcher,C., Gordon,P.M., Heikamp-de Jong,I., Jeffries,A.C., Kozera,C.J., Medina,N., Peng,X., Thi-Ngoc,H.P.,Redder,P., Schenk,M.E., Theriault,C., Tolstrup,N., Charlebois,R.L.,Doolittle,W.F., Duguet,M., Gaasterland,T., Garrett,R.A., Ragan,M.A., Sensen,C.W. and Van der Oost,J. (2001) Proc. Natl. Acad. Sci. U.S.A. 98 (14), 7835-7840