ISArch8

  • Family IS1634
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY714833 ND Uncultured archaeon
Uncultured archaeon GZfos1D1 clone GZfos1D1
DNA section
IS Length : 1923 bp

Ends


IR Length : 20/24

IRL : CTTGACTTTCAAAGATAACTGAAACTGCCCCTATTTCCCGAAGTTTTTCG
IRR : CTTGAGTTTCAAACATATGTGAAAAATCGATAGCCAGAACCATCATCCAC

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

CTTGACTTTCAAAGATAACTGAAACTGCCCCTATTTCCCGAAGTTTTTCGATAGCGAGCGCCTGCGTCGATCATTTCAGATGTTAGTCCCCTACTAATTA
ATAATTAATTTTACCTCTATTCCTATCGATAATTGGCCAAAATATTTATATACTATAGTCCCCTACTACTAATACATGGTCTTCCTGGAAAAGAAGAAAA
AGAAGGGACACATCTACTGGTACGCAACAGAAAGAAAAATGGTCAACGGGGTGGTGAAACGAACATGGCAGGAATATCTCGGAACGGCAGAAAAGATACG
GGAGTGCGCTAGAAGATCAAAAGATCTGCCGCACATCAAACTAAAATCGTTCCAGTACGGAAAGACCGCCGCGCTCCTCGCCGTATCTGACGAACTGAAC
TTTGTAGAGACCGTAAACAAGCACACCAACAAAAAGAAGATCGAAGGTCTGACAGTTGGTGAGTATCTACTTTTAAACATCATTGGACGGGGCGATGGGG
CATTATCAGAGAATGCCCTGCAGAAATGGTTTAACAAGTCCACACTCAGCACACTCTGGAAGTTTCCGCACCAACTGAGCTGTCAGAACTTCTTAAATCA
CTATAAATATATAGATCAGGAGACCAGCAGGAAGATAGAGGATGACCTATGCGCGGCGCTGATCGAGATGGGTCTAACGCCCCAGCTACTCTTCCTGGAC
GAGTCAAACTGGTTTACATATATTGAAAAAGGAGAGGAAATACCTCAAAAGGGAAAAAGCAAGCAGTTCAGGTACGATAAGAACCTGATCTCAGTGGGGC
TCGCAGTATCCGAAGATAATGTGCCATTTATGCATGAAACTTATGAAGGAAACACGCACGACTCAAAGATATTCCCAAGACTGCTGGACACGCTCACAGA
ACGGCTGCGTAACCTGGAAATAACCACTAAAAACCTGGTACTGGTCTTTGACAAGGGTAATAACTCTGAAGTGAATATCAATGACGTATTGTCTGATATG
CACATCGTAGCCTCTGCAAAGCCTGATCAGGCAAGGGATTTGCTGAGAATACCGCTCGATAAGTACAAATACCTGTACACAAACTCCAAAGGTCACAAAA
TATATGGTTACAGGACACAATATGAGTTTTTTGGGCGGGAATTCACTACAGTCGTTGCGTATAGCGATGCCTCGCACAAAAAACAGATGGGAAGTTATGA
GAAGCGAAAATCAAAGATTCTGGATAAATTTGCGGATCTGAAGAGAAGGCTTGGGAGCAACAGAGGTAAGGAGCGGGATGCGAGTAGCGTGGAGAGGGAA
GTAAATGAGATCATTCATAAGGATTTCAGAGCGATAATCGGATATAAGATTGGCGAGGTACCAGAGGGTAAGAAGAAACCCGCGCTTGTGTACTGGATCA
AAGACGCGGAGAAAGAACGTTACGACGGGTTCGGAAAGATGGTAATTTTCACTGACAAGGACCGATGGCACTCTGAAAAGATAGTAAAGACTTATAACAA
GAAGTCTCTTGTAGAAGACGACTTCAAACTGCTGAACGATGTATTACTCGTTCCTATAGGCCCTGTCAACCATCATAAGGACGATAACATCAGAGTGCAT
ACATTCCTTTGCGTTACAGGGCTGATTTTTTACAGATACTTAGCTTACCGGTGCAAACATTTTCATATAAGTCTGAAACGACTTGTGGAGGAGCTTTCAG
GGATACGTATTGCACTTGCGGAGAACAAGGCGAAGAGTGGCAAGATCGAGTTGGTGGTGGAGGAGATGGATTCGACACAAGCCAGGTTATTCTCCCATCT
GAATCTCGGGAAATTTATTACTGCGGGATAGTGAAATCGGTATTAAGGGGCTTAATGTTTTGGTGGGGACTATGTGGATGATGGTTCTGGCTATCGATTT
TTCACATATGTTTGAAACTCAAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1656 bp551 aa1761831+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MVFLEKKKKKGHIYWYATERKMVNGVVKRTWQEYLGTAEKIRECARRSKDLPHIKLKSFQYGKTAALLAVSDELNFVETVNKHTNKKKIEGLTVGEYLLL
NIIGRGDGALSENALQKWFNKSTLSTLWKFPHQLSCQNFLNHYKYIDQETSRKIEDDLCAALIEMGLTPQLLFLDESNWFTYIEKGEEIPQKGKSKQFRY
DKNLISVGLAVSEDNVPFMHETYEGNTHDSKIFPRLLDTLTERLRNLEITTKNLVLVFDKGNNSEVNINDVLSDMHIVASAKPDQARDLLRIPLDKYKYL
YTNSKGHKIYGYRTQYEFFGREFTTVVAYSDASHKKQMGSYEKRKSKILDKFADLKRRLGSNRGKERDASSVEREVNEIIHKDFRAIIGYKIGEVPEGKK
KPALVYWIKDAEKERYDGFGKMVIFTDKDRWHSEKIVKTYNKKSLVEDDFKLLNDVLLVPIGPVNHHKDDNIRVHTFLCVTGLIFYRYLAYRCKHFHISL
KRLVEELSGIRIALAENKAKSGKIELVVEEMDSTQARLFSHLNLGKFITAG

 

Blast result :
Comments
ISArch9 is 74% aa similar to ISMac10.
References
1] Hallam,S.J., Putnam,N., Preston,C.M., Detter,J.C., Rokhsar,D., Richardson,P.M. and DeLong,E.F. (2004) Science 305 (5689), 1457-1462