ISFac9

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Ferroplasma acidarmanus
Ferroplasma acidarmanus Fer1
DNA section
IS Length : 1487 bp

Ends


Left end : TTGTGAATGCTATATGAGAAATAACCTATACTAAAAATCAATCTGGAGTTATCCAGATGTGTATAGGGAGGGGGAGTATATAAATACTGTACTTACGTAC
Right end : ATAAGGAGAAAATGGTAGGGAATTATAAGAGGTATGCATAATGGTCATTAAATTGTAAATAAAATATTACATTCGATAATCTAATATAGGTGTATTTATA

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

TTGTGAATGCTATATGAGAAATAACCTATACTAAAAATCAATCTGGAGTTATCCAGATGTGTATAGGGAGGGGGAGTATATAAATACTGTACTTACGTAC
TGTTCTGTGAATCTCCCCTGATTCATCATTGCTGATCGGCATTCTCTTTCCAATGGGAAAGTAATAGGTGTCTGCTTAATGAATCATTAATCCCTGTATA
TGTATGGGTGGAGGAAATATAAATGTTATCCGTAGGAATTGATACGCATGAAAGAATGCATTATGCAGAAATACAGGATGAAAAAGAAAATAAACTATGG
CATGGAAAGATCAGGAATATAAAAGAAGATTTTGAATTTTTAATAGATAAAATAAGTAAAATAGAGAAGAGCAATAATGATAAGGTTGAATTTATATTTA
TGAATCCTACTGGGAATTACCATGTTCCATTGAAATATTTCCTGGAAAATAATAATTTTACTGTATACATGGTAGATGCAAGGAAGACATTGAATTTAAG
AAAGATGATAAACCTTAATACTATTAAATCAGACAGTGAAGATGCACATATCTTAGCAGCTACACCATGGCATGATCCTAAATACAGGGAATATACAGGC
CATAATAGGTCTTCATTGTCCAGTATTTCAAGGGAAAGGAGTATTGTTGTTAAAAGTATTACTGCAATAAAGAATTATATACATAGTGACCTTGCAGCTG
TATTCCCTGAATTTACAGATTTGTACAGCATTAATTCTGCTGCAGGAATGGCAATACTCTATGAATATGCAACACCGTACAGTATTCTAAATGCAGGTAT
TGATAATATTATAAAATCGATAAAAAAGGCAAGCAAGGGGCATTATAGAATAGAAGATATAAACAGGCTAATGGAAACTGCTGAAAACAGCATAGGAATC
CCTGATAAAGATGATGCATATAAATTCAAAATAAGGATGAATATATCCAGGCTAAGGGATGAGATGAATAATTTAAAGAATATTGAAAAAGAGATTATAA
GTAGAAGCAGCAATAATGGGGATGTTAATAACCTCACCAATCTCAGGGGCCTTGGGATTATAAATTCTGCAATAATAGTATCTGAGGTAGGAAATATAGA
ACAGTTCGAATCAGCATTGAAATTAGAATCATATGCAGGAAAATGTCCTGATATAGGGGGTTCGGGAGGTAAAACACATTCTAAGGGAATAACACATGTA
AGGAATAAATTTCTTAGCAATGCTGTATATGAGAGTGCAATTTCACTGGTAATGAATAAAAATAAGGAATTCTATGATATATTCAACAGGGAAATAGGAA
AAAAGAAATCCAATGTACAGGCATATATAGCAGTTGCAAAAAGATTGTTATTCCATATATACAGCATTATGAAGAATCATAAACCATATAAGGAGAAAAT
GGTAGGGAATTATAAGAGGTATGCATAATGGTCATTAAATTGTAAATAAAATATTACATTCGATAATCTAATATAGGTGTATTTATA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1206 bp401 aa2231428+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MLSVGIDTHERMHYAEIQDEKENKLWHGKIRNIKEDFEFLIDKISKIEKSNNDKVEFIFMNPTGNYHVPLKYFLENNNFTVYMVDARKTLNLRKMINLNT
IKSDSEDAHILAATPWHDPKYREYTGHNRSSLSSISRERSIVVKSITAIKNYIHSDLAAVFPEFTDLYSINSAAGMAILYEYATPYSILNAGIDNIIKSI
KKASKGHYRIEDINRLMETAENSIGIPDKDDAYKFKIRMNISRLRDEMNNLKNIEKEIISRSSNNGDVNNLTNLRGLGIINSAIIVSEVGNIEQFESALK
LESYAGKCPDIGGSGGKTHSKGITHVRNKFLSNAVYESAISLVMNKNKEFYDIFNREIGKKKSNVQAYIAVAKRLLFHIYSIMKNHKPYKEKMVGNYKRY
A

 

Blast result :
Comments
ISFac9 is 46% aa similar to ISFnu4.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2005) Direct submission Genbank