ISFac9
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Ferroplasma acidarmanus | Ferroplasma acidarmanus Fer1 |
DNA section
IS Length : 1487 bp
Ends
Left end : TTGTGAATGCTATATGAGAAATAACCTATACTAAAAATCAATCTGGAGTTATCCAGATGTGTATAGGGAGGGGGAGTATATAAATACTGTACTTACGTAC
Right end : ATAAGGAGAAAATGGTAGGGAATTATAAGAGGTATGCATAATGGTCATTAAATTGTAAATAAAATATTACATTCGATAATCTAATATAGGTGTATTTATA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
TTGTGAATGCTATATGAGAAATAACCTATACTAAAAATCAATCTGGAGTTATCCAGATGTGTATAGGGAGGGGGAGTATATAAATACTGTACTTACGTAC
TGTTCTGTGAATCTCCCCTGATTCATCATTGCTGATCGGCATTCTCTTTCCAATGGGAAAGTAATAGGTGTCTGCTTAATGAATCATTAATCCCTGTATA
TGTATGGGTGGAGGAAATATAAATGTTATCCGTAGGAATTGATACGCATGAAAGAATGCATTATGCAGAAATACAGGATGAAAAAGAAAATAAACTATGG
CATGGAAAGATCAGGAATATAAAAGAAGATTTTGAATTTTTAATAGATAAAATAAGTAAAATAGAGAAGAGCAATAATGATAAGGTTGAATTTATATTTA
TGAATCCTACTGGGAATTACCATGTTCCATTGAAATATTTCCTGGAAAATAATAATTTTACTGTATACATGGTAGATGCAAGGAAGACATTGAATTTAAG
AAAGATGATAAACCTTAATACTATTAAATCAGACAGTGAAGATGCACATATCTTAGCAGCTACACCATGGCATGATCCTAAATACAGGGAATATACAGGC
CATAATAGGTCTTCATTGTCCAGTATTTCAAGGGAAAGGAGTATTGTTGTTAAAAGTATTACTGCAATAAAGAATTATATACATAGTGACCTTGCAGCTG
TATTCCCTGAATTTACAGATTTGTACAGCATTAATTCTGCTGCAGGAATGGCAATACTCTATGAATATGCAACACCGTACAGTATTCTAAATGCAGGTAT
TGATAATATTATAAAATCGATAAAAAAGGCAAGCAAGGGGCATTATAGAATAGAAGATATAAACAGGCTAATGGAAACTGCTGAAAACAGCATAGGAATC
CCTGATAAAGATGATGCATATAAATTCAAAATAAGGATGAATATATCCAGGCTAAGGGATGAGATGAATAATTTAAAGAATATTGAAAAAGAGATTATAA
GTAGAAGCAGCAATAATGGGGATGTTAATAACCTCACCAATCTCAGGGGCCTTGGGATTATAAATTCTGCAATAATAGTATCTGAGGTAGGAAATATAGA
ACAGTTCGAATCAGCATTGAAATTAGAATCATATGCAGGAAAATGTCCTGATATAGGGGGTTCGGGAGGTAAAACACATTCTAAGGGAATAACACATGTA
AGGAATAAATTTCTTAGCAATGCTGTATATGAGAGTGCAATTTCACTGGTAATGAATAAAAATAAGGAATTCTATGATATATTCAACAGGGAAATAGGAA
AAAAGAAATCCAATGTACAGGCATATATAGCAGTTGCAAAAAGATTGTTATTCCATATATACAGCATTATGAAGAATCATAAACCATATAAGGAGAAAAT
GGTAGGGAATTATAAGAGGTATGCATAATGGTCATTAAATTGTAAATAAAATATTACATTCGATAATCTAATATAGGTGTATTTATA
TGTTCTGTGAATCTCCCCTGATTCATCATTGCTGATCGGCATTCTCTTTCCAATGGGAAAGTAATAGGTGTCTGCTTAATGAATCATTAATCCCTGTATA
TGTATGGGTGGAGGAAATATAAATGTTATCCGTAGGAATTGATACGCATGAAAGAATGCATTATGCAGAAATACAGGATGAAAAAGAAAATAAACTATGG
CATGGAAAGATCAGGAATATAAAAGAAGATTTTGAATTTTTAATAGATAAAATAAGTAAAATAGAGAAGAGCAATAATGATAAGGTTGAATTTATATTTA
TGAATCCTACTGGGAATTACCATGTTCCATTGAAATATTTCCTGGAAAATAATAATTTTACTGTATACATGGTAGATGCAAGGAAGACATTGAATTTAAG
AAAGATGATAAACCTTAATACTATTAAATCAGACAGTGAAGATGCACATATCTTAGCAGCTACACCATGGCATGATCCTAAATACAGGGAATATACAGGC
CATAATAGGTCTTCATTGTCCAGTATTTCAAGGGAAAGGAGTATTGTTGTTAAAAGTATTACTGCAATAAAGAATTATATACATAGTGACCTTGCAGCTG
TATTCCCTGAATTTACAGATTTGTACAGCATTAATTCTGCTGCAGGAATGGCAATACTCTATGAATATGCAACACCGTACAGTATTCTAAATGCAGGTAT
TGATAATATTATAAAATCGATAAAAAAGGCAAGCAAGGGGCATTATAGAATAGAAGATATAAACAGGCTAATGGAAACTGCTGAAAACAGCATAGGAATC
CCTGATAAAGATGATGCATATAAATTCAAAATAAGGATGAATATATCCAGGCTAAGGGATGAGATGAATAATTTAAAGAATATTGAAAAAGAGATTATAA
GTAGAAGCAGCAATAATGGGGATGTTAATAACCTCACCAATCTCAGGGGCCTTGGGATTATAAATTCTGCAATAATAGTATCTGAGGTAGGAAATATAGA
ACAGTTCGAATCAGCATTGAAATTAGAATCATATGCAGGAAAATGTCCTGATATAGGGGGTTCGGGAGGTAAAACACATTCTAAGGGAATAACACATGTA
AGGAATAAATTTCTTAGCAATGCTGTATATGAGAGTGCAATTTCACTGGTAATGAATAAAAATAAGGAATTCTATGATATATTCAACAGGGAAATAGGAA
AAAAGAAATCCAATGTACAGGCATATATAGCAGTTGCAAAAAGATTGTTATTCCATATATACAGCATTATGAAGAATCATAAACCATATAAGGAGAAAAT
GGTAGGGAATTATAAGAGGTATGCATAATGGTCATTAAATTGTAAATAAAATATTACATTCGATAATCTAATATAGGTGTATTTATA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1206 bp | 401 aa | 223 | 1428 | + | No |
Chemistry : DEDD
ORF sequence :
MLSVGIDTHERMHYAEIQDEKENKLWHGKIRNIKEDFEFLIDKISKIEKSNNDKVEFIFMNPTGNYHVPLKYFLENNNFTVYMVDARKTLNLRKMINLNT
IKSDSEDAHILAATPWHDPKYREYTGHNRSSLSSISRERSIVVKSITAIKNYIHSDLAAVFPEFTDLYSINSAAGMAILYEYATPYSILNAGIDNIIKSI
KKASKGHYRIEDINRLMETAENSIGIPDKDDAYKFKIRMNISRLRDEMNNLKNIEKEIISRSSNNGDVNNLTNLRGLGIINSAIIVSEVGNIEQFESALK
LESYAGKCPDIGGSGGKTHSKGITHVRNKFLSNAVYESAISLVMNKNKEFYDIFNREIGKKKSNVQAYIAVAKRLLFHIYSIMKNHKPYKEKMVGNYKRY
A
IKSDSEDAHILAATPWHDPKYREYTGHNRSSLSSISRERSIVVKSITAIKNYIHSDLAAVFPEFTDLYSINSAAGMAILYEYATPYSILNAGIDNIIKSI
KKASKGHYRIEDINRLMETAENSIGIPDKDDAYKFKIRMNISRLRDEMNNLKNIEKEIISRSSNNGDVNNLTNLRGLGIINSAIIVSEVGNIEQFESALK
LESYAGKCPDIGGSGGKTHSKGITHVRNKFLSNAVYESAISLVMNKNKEFYDIFNREIGKKKSNVQAYIAVAKRLLFHIYSIMKNHKPYKEKMVGNYKRY
A
Blast result :
Comments
ISFac9 is 46% aa similar to ISFnu4.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2005) Direct submission Genbank