ISSto13

  • Family IS607
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003106 ND Sulfolobus tokodaii
Sulfolobus tokodaii
DNA section
IS Length : 1928 bp

Ends


IR Length : 0

IRL : GGGCTGAATCCTTCTTCATGTTAATAGAAATCTTTTTATATTCGTTTATT
IRR : TTACCGTTTGTCCCTATACCATCATTTCAATCATTTTATCTTCAATCATG

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GGGCTGAATCCTTCTTCATGTTAATAGAAATCTTTTTATATTCGTTTATTATCAACTAAATTTGTGGAGAGGCTGTTAAGACCTAAGGAGGCTTGCCAAC
TACTAGGAATTTCATACTCAACGCTCCTAAGGTGGATTAGGGAGGGCAAGATTAGGGCAGTAATGACTGAGGGTGGGAAGTATAGGATACCATACAGTGA
GGTTAAGAAGTATTTGGAGAGGAGGGAGGAGATTAGGGCAGTAATTTACGCTAGGGTATCTTCAGCTAATCAAAAGGAGGACTTGGAAAGACAAATAAAC
TATTTAACAAACTACGCAACAGCGAAAGGTTACAAAGTAGTTGAAGTCTTGAAGGACATTGCTAGTGGGTTAAATACGCAGAGGAAAGGTCTACTAAAAC
TGCTCAAACTGGTCGAGAGCAGGAATGTCGACGTCGTTTTAATAACGTACAAGGACAGATTAACTAGGTTCGGGTTCGAATACTTAGAGGAGTTCTTTTC
AGCCATGGGAGTTAGGATAGAGGTAGTTTTCGGTGAAGAGCCAAAGGATGCAACGCAAGAACTCGTGGAGGATCTGATCTCAATCATAACATCGTTCGCA
GGGAAGATCTACGGGATGAGGAGCCACAAGAAGACGCTGTTTATACAAGGTGTAAAAAACCTAATAGGTGAGTTAAGTGGAGAGGACAGTAAAGTTGAGG
GTTAAAGTAGATTACGAGACCTATAGAAAGTTGAAGGAAGTCGAAGAGGAGTACAGGGGGATATTAGCTAACGCAATCGAGTACGGGTTGAGGAACAACA
CTACCTCGTTCACTAAGATCAAGGCGGGCATATATAAAGCGGAGAGGGAGAAACACAAGGACATACCGTCACACTACATCTACACGGCTTGCGAGGACGC
TAGCGAGAGGTTAAGCAGTTTCGAGAAAATGAAGAGAAAGGGTAGGGCTTATAGTGACAGACCAGAGGTAAGGAGGGTTACAGTACACCTAGATGACCAC
TTGTGGAAGTTCAGCCTCGATAGGATTTCAATTTCCACAAAGAGGGGTAGGGTTTCCCTATCTCCCATCTTCCCCAAGATATTCTGGAGGTATTACAATA
ACGGTTGGAGGGTTGCAAGCGAGGCTAGGTTTAAGCTCTTAAAGGGTAACGTGGTGGAACTCTACATTGTCTTTAAGAAGGATGAGCCTAAGCCTTACGA
GCCTAAAGCATTTATCCCAGTTGATCTCAATGAGAATTCGGTCTCTGTATTAGTTGATGGGAAACCAATCCTTTTAGAAACTAACACCAAGAAAATTACG
TTAGGTTATGAGTATAAAAGGAAGTGGATAACTGCTGGTAAGTCTACTAAGGATAGGGATACGAGGAGGAAGTTAAGGAAATTGAGGGAGAGGGATAAGA
AGGTGGATATTAGGAGGAAATTAGCTAAGCTTGTTGTTATGGAGGCTTTGGAAAGTAGAAGTGCAATAGTTTTAGAAGACCTACCTAAGAGGGCACCAGA
GCATATGATTAAGGACGTGAGGGACTCTCAACTTAGGCTAAGGATTTACCGTTCTGCATTTTCTTCCACAAAGAATGCCATTATGGAGAAGGCTAAGGAG
TTTGGTGTTCCCATAATTTTGGTTGATCCAGCATACACTTCATCCACATGCCCAGTCCATGGGTCAAAAATCATTTATCGACCCGATGGGGGCTCTGCCC
CAAGGGTCGGTGTCTGTGTGGTCGGAAAAGAGAGGTGGCATAGGGACGTTGTCTCACTATATAACCTCATGAGGAGGGCTGGAGATGTGAGCCCTATGCC
GTTGGGCTCAAAGGAGTCCCATGACCCACCTACCGTGAAACTTGGTAGGTGGTTGAGGGCTAAGTCCCTACACCAGATCATGATTGAAGATAAAATGATT
GAAATGATGGTATAGGGACAAACGGTAA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
642 bp213 aa64705+No
ORF function : Transposase
Chemistry : Serine

ORF sequence :

MERLLRPKEACQLLGISYSTLLRWIREGKIRAVMTEGGKYRIPYSEVKKYLERREEIRAVIYARVSSANQKEDLERQINYLTNYATAKGYKVVEVLKDIA
SGLNTQRKGLLKLLKLVESRNVDVVLITYKDRLTRFGFEYLEEFFSAMGVRIEVVFGEEPKDATQELVEDLISIITSFAGKIYGMRSHKKTLFIQGVKNL
IGELSGEDSKVEG

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1239 bp412 aa6771915+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MERTVKLRVKVDYETYRKLKEVEEEYRGILANAIEYGLRNNTTSFTKIKAGIYKAEREKHKDIPSHYIYTACEDASERLSSFEKMKRKGRAYSDRPEVRR
VTVHLDDHLWKFSLDRISISTKRGRVSLSPIFPKIFWRYYNNGWRVASEARFKLLKGNVVELYIVFKKDEPKPYEPKAFIPVDLNENSVSVLVDGKPILL
ETNTKKITLGYEYKRKWITAGKSTKDRDTRRKLRKLRERDKKVDIRRKLAKLVVMEALESRSAIVLEDLPKRAPEHMIKDVRDSQLRLRIYRSAFSSTKN
AIMEKAKEFGVPIILVDPAYTSSTCPVHGSKIIYRPDGGSAPRVGVCVVGKERWHRDVVSLYNLMRRAGDVSPMPLGSKESHDPPTVKLGRWLRAKSLHQ
IMIEDKMIEMMV

 

Blast result :
Comments
ISSto13 is 67% (ORF A) aa similar ISTko1 and 43% (ORF B) to IS1921.
References
1] Kawarabayasi,Y., Hino,Y., Horikawa,H., Jin-no,K., Takahashi,M., Sekine,M., Baba,S., Ankai,A., Kosugi,H., Hosoyama,A., Fukui,S., Nagai,Y., Nishijima,K., Otsuka,R., Nakazawa,H., Takamiya,M., Kato,Y., Yoshizawa,T., Tanaka,T., Kudoh,Y., Yamazaki,J., Kushida,N., Oguchi,A., Aoki,K., Masuda,S., Yanagii,M., Nishimura,M., Yamagishi,A., Oshima,T. and Kikuchi,H. (2001) DNA Res. 8 (4), 123-140