ISSto11

  • Family IS607
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003106 ND Sulfolobus tokodaii
Sulfolobus tokodaii
DNA section
IS Length : 1923 bp

Ends


IR Length : 0

IRL : GCCGTTGACAACAGTTTCCGATAAGCCGTGAAGTTTAAGTATTTTGTATA
IRR : GGGTTTGGGCTTCATTGAATTTTCATGAATTTGAATCCAATCCTTAGTCC

Insertion site


Left flankDirect repeatRight flankDR Length
ACTTTTAAACCTAGTTTACT0

DNA sequence

GCCGTTGACAACAGTTTCCGATAAGCCGTGAAGTTTAAGTATTTTGTATATAATTTCATGGTAGTGCTTAAACCGAAAGAGGTCTGCTAGAGATTAGGGA
TTTCCTACCGAACCCTACAGAACTACGTGAAAAAGGGCTACATCAAACCAGTAATACTACAGACCGGAAAATGGAGGTTCAGAGAAGAAGACGTAGAGAA
ACTAATGGGGATTATTAGAAAGAGGAAAATAATATTATACGCAAGAGTATCATCAAACACACAAAAAGACCACTTAATAAACCAAGTAAAGTACCTAGAG
GAACAAGTCAAGGACTACGACCAAGTAATAACAGACATGGGGTCTGGATTAAACATGAAGAGAAAAGGATTCCTCAAGTTGTTGAGAATGATACTAAACA
ACGAAGTATCAAAAGTACTCATAGCTCACCCAGACAGACTAGTTAAATTTGGTTTCGAGATACTAGAAGAAGTATGCAAAGCACACAACTGCGAACTTGT
AGTGTTAAACAATGAGGACAAAACACCAGAACAAGAGTTGATAGAGGATCTAATCCCAATCCTAGTATCATTCAGCGGGAAATTACACAGAATGACGAGT
AACAAATACGAAAAGGTGAAGAAATGTGTCGAAGAACTTAAGGCTTAAACCAGAAGAGGAGTACATTTACCTAACATACTCCATCAAGAACGATAAGAAG
GAGGAGAGCAAGATATTACTAGAGAACTATAGAGTACTACTACAGAAAGCATTAGACTGGTTGTGGGAAAAGACAAAGGTTGAGAAGAAGGAAATGAAGA
AGGGTAAGAAAATTTTCATGAAGATCAAAATAACCCTACCAAAGAAGAAGGAAGTATACAAGACGTTGAGGGACGAATTAGAGAAGAACAACACTCTAGC
TTCACACTACGTTGACAAGGCTATAAACGATGCTTACTCAATATTGAGGGGTTGGAAGAGGAGGGCTGAAAAGGGGCAAGCATCATTAAGAAAACCTAGA
TTAAAGAAGGTTTACGTTAGGGTAAAGTCAACACTTAGGAAAGTTGAGGGTGAGAGCGTTAGGATTACTGTAAGACCTTACGATTATATTACATTTTCGT
GGTCTCAGACTTGGTTTTCACGAAGAGTTAAGGGACTTGAGTTAGGTGAGCCTATAATTAAGGAGGATAAAGTGTACTTGCCATTTCGTTATAAGTTGCC
TTGGTTTACTCCCCTAGATTTTCTAGCAATTGATAGTAACCTTTACACATTAGACGCCTATGATGGTGATAAGTTCATCACATTTTCCCTGAAAGAGCTA
TACAGTTTGAAGTTTGGGATGGAGTTGAAGAGGAGTAGAATACAACGTTTTGCCTCAAAACATGGTAGGAAGGGTAAGGAGTTGCTAAAGAAGTACTCTC
ACCGTGAGAGGAACCGCGTACTAGATTATATCCACAAGTTAGTCAACGAATTGTTAGAGATGTATCCCATTACGATGTTTGCTGTTGAGAAGTTAAATAA
GCAATTAATGTTTGACGACGCAAATGACTCCCTCTCTAAGAAGATATCGAGGACTGTATGGAGGACTATACACCATGTGTTGAGGTACAAGGCTCCCCTT
TACGGTTCCTTCGTGAAAGAGGCGAACCCATACCTCACATCTAAGTCCTGCCCCAGATGTGGATGGGTTTCCCGAAAGGTTGGCGGGACTTTTAGGTGCG
AGAGGTGTGGGTTCACTCTTGATAGGCAGTTGAATGCGTCTCTAAATATCTACCTCAAGATGTGCGGGTTACCCCACATCCGTGATATTCCAAGGGTGTG
GGTTGGGGTTACCCCGCTAAAGGGGCGGAGGAGGATGAGTAGGGCAATGCCCCGTGACCCTGGTGAAGCCCAAGGACTAAGGATTGGATTCAAATTCATG
AAAATTCAATGAAGCCCAAACCC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
522 bp173 aa127648+No
ORF function : Transposase
Chemistry : Serine

ORF sequence :

MKKGYIKPVILQTGKWRFREEDVEKLMGIIRKRKIILYARVSSNTQKDHLINQVKYLEEQVKDYDQVITDMGSGLNMKRKGFLKLLRMILNNEVSKVLIA
HPDRLVKFGFEILEEVCKAHNCELVVLNNEDKTPEQELIEDLIPILVSFSGKLHRMTSNKYEKVKKCVEELKA

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1287 bp428 aa6261912+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MSKNLRLKPEEEYIYLTYSIKNDKKEESKILLENYRVLLQKALDWLWEKTKVEKKEMKKGKKIFMKIKITLPKKKEVYKTLRDELEKNNTLASHYVDKAI
NDAYSILRGWKRRAEKGQASLRKPRLKKVYVRVKSTLRKVEGESVRITVRPYDYITFSWSQTWFSRRVKGLELGEPIIKEDKVYLPFRYKLPWFTPLDFL
AIDSNLYTLDAYDGDKFITFSLKELYSLKFGMELKRSRIQRFASKHGRKGKELLKKYSHRERNRVLDYIHKLVNELLEMYPITMFAVEKLNKQLMFDDAN
DSLSKKISRTVWRTIHHVLRYKAPLYGSFVKEANPYLTSKSCPRCGWVSRKVGGTFRCERCGFTLDRQLNASLNIYLKMCGLPHIRDIPRVWVGVTPLKG
RRRMSRAMPRDPGEAQGLRIGFKFMKIQ

 

Blast result :
Comments
ISSto11 is 95% (ORF A) and 90% (ORF B) aa similar to IS1921.
File updated : september 10 2012, according to Margie Romine suggestion.
References
1] Kawarabayasi,Y., Hino,Y., Horikawa,H., Jin-no,K., Takahashi,M., Sekine,M., Baba,S., Ankai,A., Kosugi,H., Hosoyama,A., Fukui,S., Nagai,Y., Nishijima,K., Otsuka,R., Nakazawa,H., Takamiya,M., Kato,Y., Yoshizawa,T., Tanaka,T., Kudoh,Y., Yamazaki,J., Kushida,N., Oguchi,A., Aoki,K., Masuda,S., Yanagii,M., Nishimura,M., Yamagishi,A., Oshima,T. and Kikuchi,H. (2001) DNA Res. 8 (4), 123-140