ISH18
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006393 | ND | Haloarcula marismortui | Haloarcula marismortui plasmid pNG500 |
DNA section
IS Length : 1548 bp
Ends
IR Length : 11
IRL : TGCTGTGTTGACTTGATGGAAACACTGCTATCCCAAGAGAGCGTGAACTA
IRR : TGCTCTGTTGAATAGTGGTTTCTTCGTGCCCGGTCGCTCGCTGAGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
TGCTGTGTTGACTTGATGGAAACACTGCTATCCCAAGAGAGCGTGAACTAAGACATGGGGCGCAAGAGACCGACCGCTATTCCGTGCCATCGAGCACGTC
GTGTTGACTGGTCCGTGTGCGAAGGAAGCCGAGTCATGGGCGTTACAGCCCGGATGCCGCGCCCCGCGGCATCCGGGAAAGCCCGAATAGGTGAATCTCT
GCTTCACGCACTGGCGTCCCGGGTGAACAGACAATGTACCTCGGAATTGATGTCCACAAACAGTACGCACAGGTGGCAGTAATGGATGAGGCTGGTGAGA
TCGTCGAAGAGGTTCGCGTCGAGAACGCGAACCTCGACGACCTCGCCCAGCGATACGCTGGTGCTGAAGCCGCAATCGAAGCGACCAGCAATTACTACCA
CATCCACGATACGCTGTCGGAACATTTGGATGTGACTGTCGCTCACCCGAAGGAGCTGAATCAGATCGCTGACACCGACAAGAAAACTGATCGCGTCGAC
GCTAAAGAACTAGCGCGGATGGTACGGCTGAACTCTGTCCCTGAAAGCTATGTTCCAACCGACGAAGTCAGGGAAGCCCGCGCACTCGTGCGGGGGCGAC
AGACGTTAGTCGAAAACCGTACCAAATACGCCAACAAGATCCACGGGCTCCTTTCCGACCACGGTATCATTGAGGACGTGAAGCCGTTAACCATAGAGGG
ACGAGAGTTCCTGCGGGAACTCTCGATCCCGTCACCATGGGACTCGTTACTAGAGTCGTACATCGAGTTGATTGAGACGCTCACCGAGGAAATTCAGAAC
CTCGAAGAACGATCGAAGAGCGCGCTGGGTCTCTGAAGGAGACCCAGCTGCTGATGACGATTCCCGGCGTGAGTTACTATACGGCGTTGTCGATTTACGC
CGAGTTAGGCGAGATCAGTCGGTTTGACGGTGACAAATCGGTCGTCAGTTATGTCGGATTGAACCCGGTGATCCGCGAGTCAGGCGACTCGCGGATCGAG
GGGAGTATTTCGAAACGTGGATCCGGTCGTGTCCGGTGGTTGCTCGTCCAGGCTGCAAATACAGCAGTTCACACCTGTAACGATGAGTATCTAAGCCGTT
TCTATGAGCGGCTAGCAAGCCGGAAGAATTCACAGAAGGCGATCGTAGCCTGCGCTCGGAAAATGCTGGTGTCGATTTACCACATGCTAGACCGAGGCGG
GGTGTACGATCCACCTGATGTGAGTGCGTAGACGAGGGAACTGAGGGCCGCCGGGCGGGCGGCCCTCAGTGGTCGGTCGGGGCCAGCGTTAGCGACAGCT
ATCGCCGTATCGCGACCGCACCGCCTGAAGATATCCGCCGCCTGCCGGCTGGGAGAACGGCAGACCACAGTACGGCGAAACTATTTTTTCGAAAACGGTG
GTTTGTGTAGACAGCAGCGTTTCCATAGGTGAATAGCGCCCTCTGAGCGAGGATAATGATCCCCTCAATCTGTGGCGAGTGGTGTCAGCTCCTCACGGCC
CCGCTCAGCGAGCGACCGGGCACGAAGAAACCACTATTCAACAGAGCA
GTGTTGACTGGTCCGTGTGCGAAGGAAGCCGAGTCATGGGCGTTACAGCCCGGATGCCGCGCCCCGCGGCATCCGGGAAAGCCCGAATAGGTGAATCTCT
GCTTCACGCACTGGCGTCCCGGGTGAACAGACAATGTACCTCGGAATTGATGTCCACAAACAGTACGCACAGGTGGCAGTAATGGATGAGGCTGGTGAGA
TCGTCGAAGAGGTTCGCGTCGAGAACGCGAACCTCGACGACCTCGCCCAGCGATACGCTGGTGCTGAAGCCGCAATCGAAGCGACCAGCAATTACTACCA
CATCCACGATACGCTGTCGGAACATTTGGATGTGACTGTCGCTCACCCGAAGGAGCTGAATCAGATCGCTGACACCGACAAGAAAACTGATCGCGTCGAC
GCTAAAGAACTAGCGCGGATGGTACGGCTGAACTCTGTCCCTGAAAGCTATGTTCCAACCGACGAAGTCAGGGAAGCCCGCGCACTCGTGCGGGGGCGAC
AGACGTTAGTCGAAAACCGTACCAAATACGCCAACAAGATCCACGGGCTCCTTTCCGACCACGGTATCATTGAGGACGTGAAGCCGTTAACCATAGAGGG
ACGAGAGTTCCTGCGGGAACTCTCGATCCCGTCACCATGGGACTCGTTACTAGAGTCGTACATCGAGTTGATTGAGACGCTCACCGAGGAAATTCAGAAC
CTCGAAGAACGATCGAAGAGCGCGCTGGGTCTCTGAAGGAGACCCAGCTGCTGATGACGATTCCCGGCGTGAGTTACTATACGGCGTTGTCGATTTACGC
CGAGTTAGGCGAGATCAGTCGGTTTGACGGTGACAAATCGGTCGTCAGTTATGTCGGATTGAACCCGGTGATCCGCGAGTCAGGCGACTCGCGGATCGAG
GGGAGTATTTCGAAACGTGGATCCGGTCGTGTCCGGTGGTTGCTCGTCCAGGCTGCAAATACAGCAGTTCACACCTGTAACGATGAGTATCTAAGCCGTT
TCTATGAGCGGCTAGCAAGCCGGAAGAATTCACAGAAGGCGATCGTAGCCTGCGCTCGGAAAATGCTGGTGTCGATTTACCACATGCTAGACCGAGGCGG
GGTGTACGATCCACCTGATGTGAGTGCGTAGACGAGGGAACTGAGGGCCGCCGGGCGGGCGGCCCTCAGTGGTCGGTCGGGGCCAGCGTTAGCGACAGCT
ATCGCCGTATCGCGACCGCACCGCCTGAAGATATCCGCCGCCTGCCGGCTGGGAGAACGGCAGACCACAGTACGGCGAAACTATTTTTTCGAAAACGGTG
GTTTGTGTAGACAGCAGCGTTTCCATAGGTGAATAGCGCCCTCTGAGCGAGGATAATGATCCCCTCAATCTGTGGCGAGTGGTGTCAGCTCCTCACGGCC
CCGCTCAGCGAGCGACCGGGCACGAAGAAACCACTATTCAACAGAGCA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
603 bp | 200 aa | 234 | 836 | + | No |
Chemistry : DEDD
ORF sequence :
MYLGIDVHKQYAQVAVMDEAGEIVEEVRVENANLDDLAQRYAGAEAAIEATSNYYHIHDTLSEHLDVTVAHPKELNQIADTDKKTDRVDAKELARMVRLN
SVPESYVPTDEVREARALVRGRQTLVENRTKYANKIHGLLSDHGIIEDVKPLTIEGREFLRELSIPSPWDSLLESYIELIETLTEEIQNLEERSKSALGL
SVPESYVPTDEVREARALVRGRQTLVENRTKYANKIHGLLSDHGIIEDVKPLTIEGREFLRELSIPSPWDSLLESYIELIETLTEEIQNLEERSKSALGL
Blast result :
Comments
ISH18 is 50% aa similar to ISMma5
References
1] Baliga,N.S., Bonneau,R., Facciotti,M.T., Pan,M., Glusman,G., Deutsch,E.W., Shannon,P., Chiu,Y., Weng,R.S., Gan,R.R., Hung,P., Date,S.V., Marcotte,E., Hood,L. and Ng,W.V. (2004) Genome Res. 14 (11), 2221-2234