ISH18

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_006393 ND Haloarcula marismortui
Haloarcula marismortui plasmid pNG500
DNA section
IS Length : 1548 bp

Ends


IR Length : 11

IRL : TGCTGTGTTGACTTGATGGAAACACTGCTATCCCAAGAGAGCGTGAACTA
IRR : TGCTCTGTTGAATAGTGGTTTCTTCGTGCCCGGTCGCTCGCTGAGC

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

TGCTGTGTTGACTTGATGGAAACACTGCTATCCCAAGAGAGCGTGAACTAAGACATGGGGCGCAAGAGACCGACCGCTATTCCGTGCCATCGAGCACGTC
GTGTTGACTGGTCCGTGTGCGAAGGAAGCCGAGTCATGGGCGTTACAGCCCGGATGCCGCGCCCCGCGGCATCCGGGAAAGCCCGAATAGGTGAATCTCT
GCTTCACGCACTGGCGTCCCGGGTGAACAGACAATGTACCTCGGAATTGATGTCCACAAACAGTACGCACAGGTGGCAGTAATGGATGAGGCTGGTGAGA
TCGTCGAAGAGGTTCGCGTCGAGAACGCGAACCTCGACGACCTCGCCCAGCGATACGCTGGTGCTGAAGCCGCAATCGAAGCGACCAGCAATTACTACCA
CATCCACGATACGCTGTCGGAACATTTGGATGTGACTGTCGCTCACCCGAAGGAGCTGAATCAGATCGCTGACACCGACAAGAAAACTGATCGCGTCGAC
GCTAAAGAACTAGCGCGGATGGTACGGCTGAACTCTGTCCCTGAAAGCTATGTTCCAACCGACGAAGTCAGGGAAGCCCGCGCACTCGTGCGGGGGCGAC
AGACGTTAGTCGAAAACCGTACCAAATACGCCAACAAGATCCACGGGCTCCTTTCCGACCACGGTATCATTGAGGACGTGAAGCCGTTAACCATAGAGGG
ACGAGAGTTCCTGCGGGAACTCTCGATCCCGTCACCATGGGACTCGTTACTAGAGTCGTACATCGAGTTGATTGAGACGCTCACCGAGGAAATTCAGAAC
CTCGAAGAACGATCGAAGAGCGCGCTGGGTCTCTGAAGGAGACCCAGCTGCTGATGACGATTCCCGGCGTGAGTTACTATACGGCGTTGTCGATTTACGC
CGAGTTAGGCGAGATCAGTCGGTTTGACGGTGACAAATCGGTCGTCAGTTATGTCGGATTGAACCCGGTGATCCGCGAGTCAGGCGACTCGCGGATCGAG
GGGAGTATTTCGAAACGTGGATCCGGTCGTGTCCGGTGGTTGCTCGTCCAGGCTGCAAATACAGCAGTTCACACCTGTAACGATGAGTATCTAAGCCGTT
TCTATGAGCGGCTAGCAAGCCGGAAGAATTCACAGAAGGCGATCGTAGCCTGCGCTCGGAAAATGCTGGTGTCGATTTACCACATGCTAGACCGAGGCGG
GGTGTACGATCCACCTGATGTGAGTGCGTAGACGAGGGAACTGAGGGCCGCCGGGCGGGCGGCCCTCAGTGGTCGGTCGGGGCCAGCGTTAGCGACAGCT
ATCGCCGTATCGCGACCGCACCGCCTGAAGATATCCGCCGCCTGCCGGCTGGGAGAACGGCAGACCACAGTACGGCGAAACTATTTTTTCGAAAACGGTG
GTTTGTGTAGACAGCAGCGTTTCCATAGGTGAATAGCGCCCTCTGAGCGAGGATAATGATCCCCTCAATCTGTGGCGAGTGGTGTCAGCTCCTCACGGCC
CCGCTCAGCGAGCGACCGGGCACGAAGAAACCACTATTCAACAGAGCA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
603 bp200 aa234836+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MYLGIDVHKQYAQVAVMDEAGEIVEEVRVENANLDDLAQRYAGAEAAIEATSNYYHIHDTLSEHLDVTVAHPKELNQIADTDKKTDRVDAKELARMVRLN
SVPESYVPTDEVREARALVRGRQTLVENRTKYANKIHGLLSDHGIIEDVKPLTIEGREFLRELSIPSPWDSLLESYIELIETLTEEIQNLEERSKSALGL

 

Blast result :
Comments
ISH18 is 50% aa similar to ISMma5
References
1] Baliga,N.S., Bonneau,R., Facciotti,M.T., Pan,M., Glusman,G., Deutsch,E.W., Shannon,P., Chiu,Y., Weng,R.S., Gan,R.R., Hung,P., Date,S.V., Marcotte,E., Hood,L. and Ng,W.V. (2004) Genome Res. 14 (11), 2221-2234