ISH20

  • Family ISH3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_006397 ND Haloarcula marismortui
Haloarcula marismortui chromosome II
DNA section
IS Length : 1374 bp

Ends


IR Length : 15

IRL : CAGTCGATCACATCGGGTTAGAGTAAGCGTCTGCTTGGAGAGGATATGCA
IRR : CAGTCGATCACATCGACAGCCGCGTAACCCCGTTTGATGACGGTGAACTA

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

CAGTCGATCACATCGGGTTAGAGTAAGCGTCTGCTTGGAGAGGATATGCAGTCAACTCAAGCAGACAGCGAGATAGAGGAAGAGCACCTGCTTAATTTTG
TCGTCAACAGCCTCGAAGAGGAGCTTACGGTAGACCTCGACGAGAACGTAGAGGTCACGACAGAGACATTGTGCGAGGTCCTCGCCGGCGCCAGCGCCGG
CGGGACCTCAATCAACCACGTCTGCGACACGACTGACGACTCACCACACGCTAATACCGTCTGTGGACATCTCACCGATCAGTTTGAACTGGATTCGGTT
GAATCGGTTGGAGACACGCTGCTTCAACGAGATACGCTTGAGACACTTCCAGATCGACGTGGAGGTCTGCGCAGACCTCCACCTCAATCCCTACTACGGT
GATGAGGACGAAACCGAGGCTCTGTACTCCTCACAGGCCAAGCGTGGAACAACGACGTTTCACGCCTATACTAACGCTCTACGTACGCCTACGCAACAAG
CGATACACGCTGGCGGTTCGCCAGCTCGTTGCTGGCGAAACCACCAGCGATGTCCTCGGTGAGTTTCTGGAATTCCTTGACGGCCTTGACCTCGGCGTCA
AGGCCGTCTACCTTGATTGAGGTTTCTACAACAGCACCTGTCTCAGGCTGCTGTACGCGCACAATTACGCCTATGTGATGCCGATCGTCAAGTGGGGTGA
GACGATTCAAAACAAACTCAGCGAAGGCTGGAGCCGCGAGATCGAACACGATCTCGCTGGCGAGGTGGAGTTCCCTGTGTTCATCGACTGCGTGTACCAG
CAGGGACGGTACGACGAACATGGGGTGGCGCGTCACGGCTACGCCGCTGACGCGCCCTTTATCGACACGCCACGAGATGCACGAGAGCACTACAGCAAGC
GCTTCGGCATCGAATCAAGCTACCGATTAGCCAAGCAGAGCCTCGCTTTCACTAGTTCTCAGGATGCTGGACTGCGGTTGGTAATGTTTGTAGTGAGCCT
ACTGCTTCAGAACAGCTGGCGATATCTTCACTGGAGGTACGTGGCGGCGCCCCGCCGTGGGGGGCGCCGCCTCTTGCAGTGGTCGTTCACGGAGTTTTGC
GAAATGACGCTTCGCGCAGCTTGGACAGCACTCGGTGTCCGCAGGTCTGTTCCAGCGAATCAACCACTTGACGACCGGTTCTTCCGGTAGCTGTCCATCG
GGCCGGACAGCGGTCGTCAGTGGTGACACTGTCGCGTCGGCAGCAGTCTGCCGCCGACAGCGACGGTCCATCCCGAAAATCATGCTCACCAGCGGTTCGA
AGATGCTCCACAGCTAGTTCGGTTTAGTTCACCGTCATCAAACGGGGTTACGCGGCTGTCGATGTGATCGACTG
Protein section
ORF number : 0

 

Comments
ISH20 is 79% aa similar to ISH3C (Blast X results), pseudogene.
References
1] Baliga,N.S., Bonneau,R., Facciotti,M.T., Pan,M., Glusman,G., Deutsch,E.W., Shannon,P., Chiu,Y., Weng,R.S., Gan,R.R., Hung,P., Date,S.V., Marcotte,E., Hood,L. and Ng,W.V. (2004) Genome Res. 14 (11), 2221-2234