ISH19
- Family IS5
- Group ISH1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006393 | ND | Haloarcula marismortui | Haloarcula marismortui ATCC 43049 plasmid pNG500 |
DNA section
IS Length : 936 bp
Ends
IR Length : 17/21
IRL : GGCTCTGGTGAATCGCGGGACTGCGTCGGTTTCGACCGTTAGAACTAGTG
IRR : GGCCGTGGTGAATCGCCAGACATAGCTTGATTCCACGGCTACAGAGTCTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGCCGGTAGTCCT | ACCGATG | GAAAACACCCCACCG | 7 |
DNA sequence
GGCTCTGGTGAATCGCGGGACTGCGTCGGTTTCGACCGTTAGAACTAGTGGTATGAAGCGGGAAACCGCCGATGCTCTATGTCGAAGATCTCCCGCTTCA
CGAAGAAAGCAGTCCAGTTAGCTAAAAATGCTGTTGGTGAGCGAGGCGAAGTCGCCGCCCCCGAAGGGGGTGGCGGCTTCGCCGAGTATGCGGTGGTGTC
GCTGCACTGTCTGCGGGTTTACCTGGAAAAATCCTACCGAGTAGCACTTGATTTGCTGAGTGAGATGCCACAGATACTCGGGGAGATCGGCCTCGACGCG
GCCGATCTCCCCGACCACTCCACGCTAGTCAAGTGGTTTGACAGAATCAAGACTGCACTCTGGCGAGTGCTGCTGCGCCTGTCGGCGCAGGAGCACGAGC
CATCTGGTCACGCCGCTATCGATGCGACATTTTTCGACCGCGAAAACGCTAGCAAACACTACTGCCGCCGGACGAATTACCGGGTTCAGACGCTCAAAGC
GACAGCTCTCGTCGACACAGAAAGCCAAGCCATTCTAGACGTGCACTGTACGACTGAGAAACGCCACGACACGCAACTCGGCTGGCAGGTCGCCCGCGCA
ACGCGGCGACCTCGCCAGCCTCGCTGCCGACAAAGGCTACGATTGGATGGATTTACGCGAAAAACTCCGCGAAGAGGGCGTAAGACCCCTGATCAAACAC
CGTGAGTTCCGGCCCATCGATCACGCGCACAACGCGCGGATCGATGGGCCTCGATACCGCCAACGAGCGATGTGTGAGACCGTCTTCTCCACAATCAAGC
GCACGCTCGGCGACGCCGTGCGTGCGCGAACTTGGTACGGTGAGTTTCGTGAACTCGTTCTGATGTGTGTCGTTCACAACATCAAGGAGACTCTGTAGCC
GTGGAATCAAGCTATGTCTGGCGATTCACCACGGCC
CGAAGAAAGCAGTCCAGTTAGCTAAAAATGCTGTTGGTGAGCGAGGCGAAGTCGCCGCCCCCGAAGGGGGTGGCGGCTTCGCCGAGTATGCGGTGGTGTC
GCTGCACTGTCTGCGGGTTTACCTGGAAAAATCCTACCGAGTAGCACTTGATTTGCTGAGTGAGATGCCACAGATACTCGGGGAGATCGGCCTCGACGCG
GCCGATCTCCCCGACCACTCCACGCTAGTCAAGTGGTTTGACAGAATCAAGACTGCACTCTGGCGAGTGCTGCTGCGCCTGTCGGCGCAGGAGCACGAGC
CATCTGGTCACGCCGCTATCGATGCGACATTTTTCGACCGCGAAAACGCTAGCAAACACTACTGCCGCCGGACGAATTACCGGGTTCAGACGCTCAAAGC
GACAGCTCTCGTCGACACAGAAAGCCAAGCCATTCTAGACGTGCACTGTACGACTGAGAAACGCCACGACACGCAACTCGGCTGGCAGGTCGCCCGCGCA
ACGCGGCGACCTCGCCAGCCTCGCTGCCGACAAAGGCTACGATTGGATGGATTTACGCGAAAAACTCCGCGAAGAGGGCGTAAGACCCCTGATCAAACAC
CGTGAGTTCCGGCCCATCGATCACGCGCACAACGCGCGGATCGATGGGCCTCGATACCGCCAACGAGCGATGTGTGAGACCGTCTTCTCCACAATCAAGC
GCACGCTCGGCGACGCCGTGCGTGCGCGAACTTGGTACGGTGAGTTTCGTGAACTCGTTCTGATGTGTGTCGTTCACAACATCAAGGAGACTCTGTAGCC
GTGGAATCAAGCTATGTCTGGCGATTCACCACGGCC
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
820 bp | 273 aa | 79 | 898 | + | Yes |
Chemistry : DDE
ORF sequence :
MSKISRFTKKAVQLAKNAVGERGEVAAPEGGGGFAEYAVVSLHCLRVYLEKSYRVALDLLSEMPQILGEIGLDAADLPDHSTLVKWFDRIKTALWRVLLR
LSAQEHEPSGHAAIDATFFDRENASKHYCRRTNYRVQTLKATALVDTESQAILDVHCTTEKRHDTQLGWQVARATRGDLASLAADKGYDWMDLREKLREE
GVRPLIKHREFRPIDHAHNARIDGPRYRQRAMCETVFSTIKRTLGDAVRARTWYGEFRELVLMCVVHNIKETL
LSAQEHEPSGHAAIDATFFDRENASKHYCRRTNYRVQTLKATALVDTESQAILDVHCTTEKRHDTQLGWQVARATRGDLASLAADKGYDWMDLREKLREE
GVRPLIKHREFRPIDHAHNARIDGPRYRQRAMCETVFSTIKRTLGDAVRARTWYGEFRELVLMCVVHNIKETL
Blast result :
Comments
ISH19 is 93% aa similar to ISH9. There is a premature STOP codon and a frameshift. The transposase is probably inactive, it was reconstructed in silico.
References
1] Baliga,N.S., Bonneau,R., Facciotti,M.T., Pan,M., Glusman,G., Deutsch,E.W., Shannon,P., Chiu,Y., Weng,R.S., Gan,R.R., Hung,P., Date,S.V., Marcotte,E., Hood,L. and Ng,W.V. (2004) Genome Res. 14 (11), 2221-2234