ISHma10

  • Family IS5
  • Group ISH1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_006392 ND Haloarcula marismortui
Haloarcula marismortui plasmid pNG400
DNA section
IS Length : 935 bp

Ends


IR Length : 14/15

IRL : GGCTCAGTTGAATCCACAGATGGCGCCGGGATAGGTCGTTAGAATCACCG
IRR : GGCTCAATTGAATCCGGCGAATTTCGGCGTTTCAGCGTTCAATTGCCTGC

Insertion site


Left flankDirect repeatRight flankDR Length
GTTCTTTAGCGTACCTGCTACCGTCTAGAGTATTCACCTATGAGTCA8

DNA sequence

GGCTCAGTTGAATCCACAGATGGCGCCGGGATAGGTCGTTAGAATCACCGGTATGAAGCGGGAGAGTAATGTTATGCACAACACCCTCTTCCGCTTCGTG
AAGCAAGTGGCTTCACTCGCTCAAAAGCTTACTGACGCTGCGCTGATGGAACTGAGTGATCCAGCCGGCAACGGGTTTGCCGGCTGGAAGCACGCAGTCT
TGCTCTATCTGCGCGAACACATGAGCGCGGAGTACGAGGAAATCATCGACTGGGCCGAAGAGATGGAACGTGTTCGAGCGGTATTGAATCTTCAACGCGG
GGAGTTTCCCGCGCCTTCGACGCTGTGTAAGGCGTTCAAACGGGCATCGATAACTGTCTGGCGACAGCTGCTCCGCCGGTCGGCGGAGCTGCTGGACCAG
AATGGTCACGCCGCAATTGATGCCACCTACTTCGACCGTCAGCAGGCATCGTCTCACTACTTGCGACGGATTGATCGTTCCGTCAAAACGATCCAGACGA
CGTTTCTCGTAGATACAGCTGAGGGAGCAATTCTTGACTTACACTGCAGCACGAAGTGGCCTGACGAAACCAAGATCGGCCCGAAGGTCGCCCTGCGGAA
CGCGGGCGACCTTCGAAGCTTGGCCGCTGACAAAGGCTATGATGACATGAGCTTCCGTGAGGAGCTTCGAAACGCCGGGATTTGTCCGCTGATCAAGCAC
CGTGTTTTCGCTCCTTACGATCACGCACACAACGCCCGAATAGACGACGAGCTCTATGGTCAGCGATCACAGACTGAGTCCGTCAACTCCTCAATCAAGC
GCTCGCACGGCTCCGCCGTCCGAGCGCGTGACTGGTTCCGCCAGTTCCGGGAGATAACGCTCATAGCCGGCGTTTATAACGTGGAGCAGGCAATTGAACG
CTGAAACGCCGAAATTCGCCGGATTCAATTGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
852 bp283 aa53904+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKRESNVMHNTLFRFVKQVASLAQKLTDAALMELSDPAGNGFAGWKHAVLLYLREHMSAEYEEIIDWAEEMERVRAVLNLQRGEFPAPSTLCKAFKRASI
TVWRQLLRRSAELLDQNGHAAIDATYFDRQQASSHYLRRIDRSVKTIQTTFLVDTAEGAILDLHCSTKWPDETKIGPKVALRNAGDLRSLAADKGYDDMS
FREELRNAGICPLIKHRVFAPYDHAHNARIDDELYGQRSQTESVNSSIKRSHGSAVRARDWFRQFREITLIAGVYNVEQAIER

 

Blast result :
Comments
ISHma10 is 65% aa similar to ISH9.
References
1] Baliga,N.S., Bonneau,R., Facciotti,M.T., Pan,M., Glusman,G., Deutsch,E.W., Shannon,P., Chiu,Y., Weng,R.S., Gan,R.R., Hung,P., Date,S.V., Marcotte,E., Hood,L. and Ng,W.V. (2004) Genome Res. 14 (11), 2221-2234