ISHma10
- Family IS5
- Group ISH1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006392 | ND | Haloarcula marismortui | Haloarcula marismortui plasmid pNG400 |
DNA section
IS Length : 935 bp
Ends
IR Length : 14/15
IRL : GGCTCAGTTGAATCCACAGATGGCGCCGGGATAGGTCGTTAGAATCACCG
IRR : GGCTCAATTGAATCCGGCGAATTTCGGCGTTTCAGCGTTCAATTGCCTGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTTCTTTAGCGTACCTGCTACC | GTCTAGAG | TATTCACCTATGAGTCA | 8 |
DNA sequence
GGCTCAGTTGAATCCACAGATGGCGCCGGGATAGGTCGTTAGAATCACCGGTATGAAGCGGGAGAGTAATGTTATGCACAACACCCTCTTCCGCTTCGTG
AAGCAAGTGGCTTCACTCGCTCAAAAGCTTACTGACGCTGCGCTGATGGAACTGAGTGATCCAGCCGGCAACGGGTTTGCCGGCTGGAAGCACGCAGTCT
TGCTCTATCTGCGCGAACACATGAGCGCGGAGTACGAGGAAATCATCGACTGGGCCGAAGAGATGGAACGTGTTCGAGCGGTATTGAATCTTCAACGCGG
GGAGTTTCCCGCGCCTTCGACGCTGTGTAAGGCGTTCAAACGGGCATCGATAACTGTCTGGCGACAGCTGCTCCGCCGGTCGGCGGAGCTGCTGGACCAG
AATGGTCACGCCGCAATTGATGCCACCTACTTCGACCGTCAGCAGGCATCGTCTCACTACTTGCGACGGATTGATCGTTCCGTCAAAACGATCCAGACGA
CGTTTCTCGTAGATACAGCTGAGGGAGCAATTCTTGACTTACACTGCAGCACGAAGTGGCCTGACGAAACCAAGATCGGCCCGAAGGTCGCCCTGCGGAA
CGCGGGCGACCTTCGAAGCTTGGCCGCTGACAAAGGCTATGATGACATGAGCTTCCGTGAGGAGCTTCGAAACGCCGGGATTTGTCCGCTGATCAAGCAC
CGTGTTTTCGCTCCTTACGATCACGCACACAACGCCCGAATAGACGACGAGCTCTATGGTCAGCGATCACAGACTGAGTCCGTCAACTCCTCAATCAAGC
GCTCGCACGGCTCCGCCGTCCGAGCGCGTGACTGGTTCCGCCAGTTCCGGGAGATAACGCTCATAGCCGGCGTTTATAACGTGGAGCAGGCAATTGAACG
CTGAAACGCCGAAATTCGCCGGATTCAATTGAGCC
AAGCAAGTGGCTTCACTCGCTCAAAAGCTTACTGACGCTGCGCTGATGGAACTGAGTGATCCAGCCGGCAACGGGTTTGCCGGCTGGAAGCACGCAGTCT
TGCTCTATCTGCGCGAACACATGAGCGCGGAGTACGAGGAAATCATCGACTGGGCCGAAGAGATGGAACGTGTTCGAGCGGTATTGAATCTTCAACGCGG
GGAGTTTCCCGCGCCTTCGACGCTGTGTAAGGCGTTCAAACGGGCATCGATAACTGTCTGGCGACAGCTGCTCCGCCGGTCGGCGGAGCTGCTGGACCAG
AATGGTCACGCCGCAATTGATGCCACCTACTTCGACCGTCAGCAGGCATCGTCTCACTACTTGCGACGGATTGATCGTTCCGTCAAAACGATCCAGACGA
CGTTTCTCGTAGATACAGCTGAGGGAGCAATTCTTGACTTACACTGCAGCACGAAGTGGCCTGACGAAACCAAGATCGGCCCGAAGGTCGCCCTGCGGAA
CGCGGGCGACCTTCGAAGCTTGGCCGCTGACAAAGGCTATGATGACATGAGCTTCCGTGAGGAGCTTCGAAACGCCGGGATTTGTCCGCTGATCAAGCAC
CGTGTTTTCGCTCCTTACGATCACGCACACAACGCCCGAATAGACGACGAGCTCTATGGTCAGCGATCACAGACTGAGTCCGTCAACTCCTCAATCAAGC
GCTCGCACGGCTCCGCCGTCCGAGCGCGTGACTGGTTCCGCCAGTTCCGGGAGATAACGCTCATAGCCGGCGTTTATAACGTGGAGCAGGCAATTGAACG
CTGAAACGCCGAAATTCGCCGGATTCAATTGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
852 bp | 283 aa | 53 | 904 | + | No |
Chemistry : DDE
ORF sequence :
MKRESNVMHNTLFRFVKQVASLAQKLTDAALMELSDPAGNGFAGWKHAVLLYLREHMSAEYEEIIDWAEEMERVRAVLNLQRGEFPAPSTLCKAFKRASI
TVWRQLLRRSAELLDQNGHAAIDATYFDRQQASSHYLRRIDRSVKTIQTTFLVDTAEGAILDLHCSTKWPDETKIGPKVALRNAGDLRSLAADKGYDDMS
FREELRNAGICPLIKHRVFAPYDHAHNARIDDELYGQRSQTESVNSSIKRSHGSAVRARDWFRQFREITLIAGVYNVEQAIER
TVWRQLLRRSAELLDQNGHAAIDATYFDRQQASSHYLRRIDRSVKTIQTTFLVDTAEGAILDLHCSTKWPDETKIGPKVALRNAGDLRSLAADKGYDDMS
FREELRNAGICPLIKHRVFAPYDHAHNARIDDELYGQRSQTESVNSSIKRSHGSAVRARDWFRQFREITLIAGVYNVEQAIER
Blast result :
Comments
ISHma10 is 65% aa similar to ISH9.
References
1] Baliga,N.S., Bonneau,R., Facciotti,M.T., Pan,M., Glusman,G., Deutsch,E.W., Shannon,P., Chiu,Y., Weng,R.S., Gan,R.R., Hung,P., Date,S.V., Marcotte,E., Hood,L. and Ng,W.V. (2004) Genome Res. 14 (11), 2221-2234