ISHma9
- Family IS5
- Group ISH1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006396 | ND | Haloarcula marismortui | Haloarcula marismortui chromosome I |
DNA section
IS Length : 929 bp
Ends
IR Length : 13/15
IRL : TGCCGTGTTGAATAGCGGTCTAATCAGTTGATATCACGGAGTAGAAGGAC
IRR : TGCTCTGTTGAATAGATGCTGAGTCACGGCTATAGAGGCTCACAAAGCGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CACTACGCCAACGAAG | GTAAATCGGCTTTCTGAA | 0 |
DNA sequence
TGCCGTGTTGAATAGCGGTCTAATCAGTTGATATCACGGAGTAGAAGGACGAAGCCGAGGAAATCGACTCTACCTATGGAGATCGACATCCTCGACTTCG
TTGAGCAGTGTCGGCGTCTAGTCAAACAAGCGTTAGGGAAGCACGCGGGCGAGCCCGCCAGCGGCGCGTTCGCCCGCTGGGTCCACGTCGTCTTGCACTG
TTTCCGGGTCGAAGAAGAGCACAGCTACCGTGAAACGCCGAATCGGCTGGAATACATGGCTGAACTCCGTGAGATTTTTGATCTTGATCAGGACGAACTT
CCGGACTACACAACAATCTACAAGTCTTTCGACCGGCTGAAAATGTGGGTCTGGCGGGCGTTGCTGCGCGTTTCAGCGCAGCAACACCCGCAGTCTGGAC
ACGTAGCACTCGACAGCACGTTCTTCGACCGCCGTATCTCTTCATCGTACTACCGCCAACGCTCCGGAAACAGCGTTCAGACGCTGAAAGTGACGACATT
AACGGATGTGGAGTCACTTGCTGTACTTGACGTACACATCTCTGCACGGTGGCAACACGACACCAAGACTGGACCGCAGGTCGGCCGGCGGAACGCGGAC
GACCTGCTGTCTGTCGCCGCTGACAACGGTTTCCAAGACTGGAACACCGAGTACGAGATCGCTGCACTAGATATCGACTATCTGGTTCACTACCGTGGTT
CGTCACTGAACGCCACCGCGAATAACACCCTCATCCGGTCAAAAGTCTACTCTCAGCGCTGGATGGCCGAAACCTCGTATTCGACAATCAAGCGCTCGCT
CGGCGACGCCGTGCGAGCGCTTGGCTGGTATCGGCAGTTCCGTGAAATCGTTCTCATGTTCGCCATCTCAAACATAGAACCGCTTTGTGAGCCTCTATAG
CCGTGACTCAGCATCTATTCAACAGAGCA
TTGAGCAGTGTCGGCGTCTAGTCAAACAAGCGTTAGGGAAGCACGCGGGCGAGCCCGCCAGCGGCGCGTTCGCCCGCTGGGTCCACGTCGTCTTGCACTG
TTTCCGGGTCGAAGAAGAGCACAGCTACCGTGAAACGCCGAATCGGCTGGAATACATGGCTGAACTCCGTGAGATTTTTGATCTTGATCAGGACGAACTT
CCGGACTACACAACAATCTACAAGTCTTTCGACCGGCTGAAAATGTGGGTCTGGCGGGCGTTGCTGCGCGTTTCAGCGCAGCAACACCCGCAGTCTGGAC
ACGTAGCACTCGACAGCACGTTCTTCGACCGCCGTATCTCTTCATCGTACTACCGCCAACGCTCCGGAAACAGCGTTCAGACGCTGAAAGTGACGACATT
AACGGATGTGGAGTCACTTGCTGTACTTGACGTACACATCTCTGCACGGTGGCAACACGACACCAAGACTGGACCGCAGGTCGGCCGGCGGAACGCGGAC
GACCTGCTGTCTGTCGCCGCTGACAACGGTTTCCAAGACTGGAACACCGAGTACGAGATCGCTGCACTAGATATCGACTATCTGGTTCACTACCGTGGTT
CGTCACTGAACGCCACCGCGAATAACACCCTCATCCGGTCAAAAGTCTACTCTCAGCGCTGGATGGCCGAAACCTCGTATTCGACAATCAAGCGCTCGCT
CGGCGACGCCGTGCGAGCGCTTGGCTGGTATCGGCAGTTCCGTGAAATCGTTCTCATGTTCGCCATCTCAAACATAGAACCGCTTTGTGAGCCTCTATAG
CCGTGACTCAGCATCTATTCAACAGAGCA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
825 bp | 274 aa | 76 | 900 | + | No |
Chemistry : DDE
ORF sequence :
MEIDILDFVEQCRRLVKQALGKHAGEPASGAFARWVHVVLHCFRVEEEHSYRETPNRLEYMAELREIFDLDQDELPDYTTIYKSFDRLKMWVWRALLRVS
AQQHPQSGHVALDSTFFDRRISSSYYRQRSGNSVQTLKVTTLTDVESLAVLDVHISARWQHDTKTGPQVGRRNADDLLSVAADNGFQDWNTEYEIAALDI
DYLVHYRGSSLNATANNTLIRSKVYSQRWMAETSYSTIKRSLGDAVRALGWYRQFREIVLMFAISNIEPLCEPL
AQQHPQSGHVALDSTFFDRRISSSYYRQRSGNSVQTLKVTTLTDVESLAVLDVHISARWQHDTKTGPQVGRRNADDLLSVAADNGFQDWNTEYEIAALDI
DYLVHYRGSSLNATANNTLIRSKVYSQRWMAETSYSTIKRSLGDAVRALGWYRQFREIVLMFAISNIEPLCEPL
Blast result :
Comments
ISHma9 is 59% aa similar to ISH9.
References
1] Baliga,N.S., Bonneau,R., Facciotti,M.T., Pan,M., Glusman,G., Deutsch,E.W., Shannon,P., Chiu,Y., Weng,R.S., Gan,R.R., Hung,P., Date,S.V., Marcotte,E., Hood,L. and Ng,W.V. (2004) Genome Res. 14 (11), 2221-2234