ISHma9

  • Family IS5
  • Group ISH1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_006396 ND Haloarcula marismortui
Haloarcula marismortui chromosome I
DNA section
IS Length : 929 bp

Ends


IR Length : 13/15

IRL : TGCCGTGTTGAATAGCGGTCTAATCAGTTGATATCACGGAGTAGAAGGAC
IRR : TGCTCTGTTGAATAGATGCTGAGTCACGGCTATAGAGGCTCACAAAGCGG

Insertion site


Left flankDirect repeatRight flankDR Length
CACTACGCCAACGAAGGTAAATCGGCTTTCTGAA0

DNA sequence

TGCCGTGTTGAATAGCGGTCTAATCAGTTGATATCACGGAGTAGAAGGACGAAGCCGAGGAAATCGACTCTACCTATGGAGATCGACATCCTCGACTTCG
TTGAGCAGTGTCGGCGTCTAGTCAAACAAGCGTTAGGGAAGCACGCGGGCGAGCCCGCCAGCGGCGCGTTCGCCCGCTGGGTCCACGTCGTCTTGCACTG
TTTCCGGGTCGAAGAAGAGCACAGCTACCGTGAAACGCCGAATCGGCTGGAATACATGGCTGAACTCCGTGAGATTTTTGATCTTGATCAGGACGAACTT
CCGGACTACACAACAATCTACAAGTCTTTCGACCGGCTGAAAATGTGGGTCTGGCGGGCGTTGCTGCGCGTTTCAGCGCAGCAACACCCGCAGTCTGGAC
ACGTAGCACTCGACAGCACGTTCTTCGACCGCCGTATCTCTTCATCGTACTACCGCCAACGCTCCGGAAACAGCGTTCAGACGCTGAAAGTGACGACATT
AACGGATGTGGAGTCACTTGCTGTACTTGACGTACACATCTCTGCACGGTGGCAACACGACACCAAGACTGGACCGCAGGTCGGCCGGCGGAACGCGGAC
GACCTGCTGTCTGTCGCCGCTGACAACGGTTTCCAAGACTGGAACACCGAGTACGAGATCGCTGCACTAGATATCGACTATCTGGTTCACTACCGTGGTT
CGTCACTGAACGCCACCGCGAATAACACCCTCATCCGGTCAAAAGTCTACTCTCAGCGCTGGATGGCCGAAACCTCGTATTCGACAATCAAGCGCTCGCT
CGGCGACGCCGTGCGAGCGCTTGGCTGGTATCGGCAGTTCCGTGAAATCGTTCTCATGTTCGCCATCTCAAACATAGAACCGCTTTGTGAGCCTCTATAG
CCGTGACTCAGCATCTATTCAACAGAGCA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
825 bp274 aa76900+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MEIDILDFVEQCRRLVKQALGKHAGEPASGAFARWVHVVLHCFRVEEEHSYRETPNRLEYMAELREIFDLDQDELPDYTTIYKSFDRLKMWVWRALLRVS
AQQHPQSGHVALDSTFFDRRISSSYYRQRSGNSVQTLKVTTLTDVESLAVLDVHISARWQHDTKTGPQVGRRNADDLLSVAADNGFQDWNTEYEIAALDI
DYLVHYRGSSLNATANNTLIRSKVYSQRWMAETSYSTIKRSLGDAVRALGWYRQFREIVLMFAISNIEPLCEPL

 

Blast result :
Comments
ISHma9 is 59% aa similar to ISH9.
References
1] Baliga,N.S., Bonneau,R., Facciotti,M.T., Pan,M., Glusman,G., Deutsch,E.W., Shannon,P., Chiu,Y., Weng,R.S., Gan,R.R., Hung,P., Date,S.V., Marcotte,E., Hood,L. and Ng,W.V. (2004) Genome Res. 14 (11), 2221-2234